Wall clock time and date at job start Tue Mar 31 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47076 * 2 1 4 4 C 1.36936 * 120.00041 * 275.30648 * 3 2 1 5 5 H 1.07996 * 120.00256 * 37.57953 * 4 3 2 6 6 C 1.38807 * 120.00075 * 217.58003 * 4 3 2 7 7 N 1.31622 * 120.00080 * 21.42741 * 6 4 3 8 8 Si 1.86803 * 120.00203 * 201.42524 * 6 4 3 9 9 H 1.48504 * 109.47158 * 90.00005 * 8 6 4 10 10 H 1.48494 * 109.47515 * 210.00107 * 8 6 4 11 11 H 1.48500 * 109.47059 * 330.00387 * 8 6 4 12 12 C 1.46499 * 120.00213 * 95.31064 * 3 2 1 13 13 C 1.52999 * 109.47010 * 270.00192 * 12 3 2 14 14 N 1.46505 * 109.47274 * 179.97438 * 13 12 3 15 15 C 1.34771 * 119.99855 * 179.97438 * 14 13 12 16 16 O 1.21631 * 120.00504 * 0.02562 * 15 14 13 17 17 C 1.47269 * 119.99919 * 179.97438 * 15 14 13 18 18 C 1.46693 * 126.94178 * 0.11589 * 17 15 14 19 19 C 1.34485 * 106.33197 * 180.29935 * 18 17 15 20 20 C 1.50699 * 125.57008 * 179.76028 * 19 18 17 21 21 N 1.36441 * 108.85422 * 359.76005 * 19 18 17 22 22 C 1.46506 * 124.84974 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47383 * 270.00132 * 22 21 19 24 24 C 1.52997 * 117.50027 * 243.62119 * 23 22 21 25 25 C 1.52993 * 117.50024 * 174.99847 * 23 22 21 26 26 C 1.34654 * 110.30160 * 359.97438 * 21 19 18 27 27 C 1.50708 * 125.80220 * 180.02562 * 26 21 19 28 28 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47580 * 300.00273 * 1 2 3 30 30 H 1.09004 * 109.47235 * 60.00004 * 1 2 3 31 31 H 1.08996 * 109.47418 * 239.99570 * 2 1 3 32 32 H 1.09004 * 109.47235 * 119.99995 * 2 1 3 33 33 H 0.97000 * 119.99889 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47520 * 149.99831 * 12 3 2 35 35 H 1.09005 * 109.47300 * 29.99810 * 12 3 2 36 36 H 1.08997 * 109.47273 * 59.99488 * 13 12 3 37 37 H 1.09003 * 109.46700 * 299.99410 * 13 12 3 38 38 H 0.97000 * 119.99871 * 359.97438 * 14 13 12 39 39 H 1.07998 * 126.83079 * 0.09795 * 18 17 15 40 40 H 1.08996 * 109.46818 * 270.00103 * 20 19 18 41 41 H 1.09004 * 109.47195 * 29.99981 * 20 19 18 42 42 H 1.09000 * 109.46749 * 149.99633 * 20 19 18 43 43 H 1.09000 * 109.46788 * 30.00534 * 22 21 19 44 44 H 1.09000 * 109.47151 * 149.99983 * 22 21 19 45 45 H 1.09002 * 115.54398 * 29.32952 * 23 22 21 46 46 H 1.09000 * 117.49548 * 359.97438 * 24 23 22 47 47 H 1.09005 * 117.49883 * 145.01817 * 24 23 22 48 48 H 1.09004 * 117.49647 * 214.97900 * 25 23 22 49 49 H 1.09003 * 117.50176 * 359.97438 * 25 23 22 50 50 H 1.09001 * 109.46863 * 90.00205 * 27 26 21 51 51 H 1.09000 * 109.47266 * 330.00144 * 27 26 21 52 52 H 1.09002 * 109.47015 * 210.00277 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2795 -2.6585 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5695 -3.1909 11 1 2.2167 3.8357 -3.7671 12 6 2.3731 2.0327 1.2632 13 6 1.1425 2.7382 1.8365 14 7 1.4972 3.3893 3.1001 15 6 0.5647 4.0766 3.7890 16 8 -0.5713 4.1561 3.3619 17 6 0.9211 4.7306 5.0594 18 6 2.2355 4.7342 5.7108 19 6 2.0939 5.4442 6.8442 20 6 3.1827 5.7162 7.8500 21 7 0.8034 5.8779 6.9345 22 6 0.2660 6.6838 8.0337 23 6 -0.2762 5.7597 9.1259 24 6 -1.7763 5.8188 9.4208 25 6 -0.7770 6.4100 10.4170 26 6 0.0943 5.4595 5.8691 27 6 -1.3644 5.7407 5.6153 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0488 3.4031 -0.7829 34 1 3.1616 2.7641 1.0860 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0068 2.0138 37 1 0.7902 3.4876 1.1277 38 1 2.4031 3.3256 3.4409 39 1 3.1366 4.2583 5.3532 40 1 3.1922 4.9238 8.5983 41 1 4.1467 5.7480 7.3423 42 1 2.9966 6.6736 8.3368 43 1 1.0578 7.3089 8.4466 44 1 -0.5391 7.3166 7.6604 45 1 0.2155 4.7904 9.2083 46 1 -2.3768 6.5164 8.8369 47 1 -2.2720 4.8882 9.6972 48 1 -0.6151 5.8683 11.3490 49 1 -0.7197 7.4962 10.4886 50 1 -1.4626 6.6666 5.0484 51 1 -1.8862 5.8404 6.5670 52 1 -1.7994 4.9187 5.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267255472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:21 Heat of formation + Delta-G solvation = 24.840132 kcal Electronic energy + Delta-G solvation = -28831.584078 eV Core-core repulsion = 25025.185161 eV Total energy + Delta-G solvation = -3806.398918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.49947 -40.18625 -38.32034 -38.03198 -35.55943 -33.83277 -33.58991 -33.40954 -31.32240 -30.03709 -29.44686 -27.69263 -26.21409 -25.60114 -23.73992 -23.29057 -22.59147 -22.13383 -21.98679 -20.86925 -19.77001 -18.61755 -17.88369 -17.18997 -16.91753 -16.69532 -16.58817 -16.15307 -15.70254 -15.54333 -15.43299 -15.22128 -14.81048 -14.46989 -14.27164 -14.15687 -14.10504 -13.97965 -13.72135 -13.47578 -13.41677 -13.23135 -13.19652 -13.03934 -13.00253 -12.64837 -12.47855 -12.37093 -12.32822 -12.29209 -12.25074 -12.01550 -11.66965 -11.48986 -11.39140 -11.01069 -10.82806 -10.54409 -10.01978 -9.51109 -8.92255 -8.60041 -7.85288 -5.48531 0.75381 1.42975 1.43247 1.47627 1.54172 1.77591 2.41194 2.55609 2.60619 2.81369 3.22636 3.59475 3.76207 3.80781 3.81081 3.89256 4.00308 4.09676 4.13861 4.28633 4.31969 4.35186 4.47436 4.47763 4.51029 4.58832 4.66078 4.73767 4.76477 4.78065 4.82831 4.83340 4.84766 4.93329 4.99356 5.01884 5.08232 5.14036 5.20261 5.22742 5.22882 5.28695 5.33822 5.52382 5.57159 5.67283 5.75631 5.83755 6.14406 6.37755 6.45556 6.76245 7.14697 7.41060 7.82795 8.35590 9.10666 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002483 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.313567 B =11276.073171 C =11814.284731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.053 0.947 6 C -0.031 4.031 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.291 1.291 10 H -0.287 1.287 11 H -0.270 1.270 12 C 0.147 3.853 13 C 0.125 3.875 14 N -0.713 5.713 15 C 0.579 3.421 16 O -0.597 6.597 17 C -0.266 4.266 18 C -0.187 4.187 19 C 0.019 3.981 20 C -0.079 4.079 21 N -0.428 5.428 22 C 0.126 3.874 23 C -0.183 4.183 24 C -0.184 4.184 25 C -0.152 4.152 26 C 0.102 3.898 27 C -0.088 4.088 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.407 0.593 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.113 0.887 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 8.679 26.322 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.400 4.400 5 H 0.071 0.929 6 C -0.229 4.229 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.218 1.218 10 H -0.213 1.213 11 H -0.195 1.195 12 C 0.019 3.981 13 C -0.002 4.002 14 N -0.363 5.363 15 C 0.369 3.631 16 O -0.481 6.481 17 C -0.276 4.276 18 C -0.210 4.210 19 C -0.089 4.089 20 C -0.136 4.136 21 N -0.104 5.104 22 C 0.005 3.995 23 C -0.202 4.202 24 C -0.221 4.221 25 C -0.189 4.189 26 C -0.016 4.016 27 C -0.145 4.145 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.242 0.758 39 H 0.169 0.831 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.131 0.869 50 H 0.095 0.905 51 H 0.108 0.892 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.583 8.954 26.245 28.501 hybrid contribution 0.403 0.369 -1.101 1.229 sum -6.180 9.323 25.144 27.520 Atomic orbital electron populations 1.22217 0.98005 1.00868 1.00341 1.21011 0.93180 0.85395 0.99279 1.43854 1.76397 1.09679 1.01943 1.19171 1.04316 1.21803 0.94665 0.92949 1.25795 0.94027 1.02894 1.00173 1.70090 1.03567 1.37844 1.43910 0.85513 0.76852 0.79976 0.79610 1.21835 1.21341 1.19460 1.20896 0.94334 0.96643 0.86186 1.21859 0.99801 0.95120 0.83379 1.45749 1.13812 1.53399 1.23329 1.17903 0.84065 0.77408 0.83678 1.90658 1.21862 1.64164 1.71371 1.20151 0.96749 1.12218 0.98483 1.21987 0.96450 1.06035 0.96566 1.20687 0.86013 1.02733 0.99430 1.20427 0.94234 1.02981 0.95943 1.43715 1.08182 1.41152 1.17398 1.21743 1.01054 0.92138 0.84515 1.22526 0.98382 1.01097 0.98224 1.23185 0.91424 1.03600 1.03930 1.23052 1.01528 1.01562 0.92751 1.20372 0.95057 0.97852 0.88271 1.20497 0.87781 1.03282 1.02921 0.91131 0.94243 0.94611 0.94276 0.93118 0.93716 0.90939 0.93902 0.93588 0.95522 0.75797 0.83112 0.89957 0.89368 0.89976 0.86474 0.88003 0.88646 0.87741 0.88925 0.87799 0.86863 0.90452 0.89165 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.87 10.21 71.98 0.73 -5.14 16 2 C 0.14 5.88 6.44 86.38 0.56 6.44 16 3 N -0.60 -30.47 2.43 -702.03 -1.71 -32.18 16 4 C -0.27 -15.12 9.45 84.03 0.79 -14.33 16 5 H 0.05 2.98 7.92 -2.91 -0.02 2.95 16 6 C -0.03 -1.74 4.95 84.86 0.42 -1.32 16 7 N -0.91 -52.82 11.47 21.65 0.25 -52.57 16 8 Si 0.95 45.85 29.60 68.60 2.03 47.88 16 9 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.15 6.99 5.45 86.38 0.47 7.46 16 13 C 0.12 5.66 6.00 86.38 0.52 6.18 16 14 N -0.71 -28.15 5.55 -466.51 -2.59 -30.74 16 15 C 0.58 23.38 7.81 86.62 0.68 24.06 16 16 O -0.60 -27.69 14.80 -4.13 -0.06 -27.75 16 17 C -0.27 -8.76 6.29 -19.04 -0.12 -8.88 16 18 C -0.19 -4.99 10.45 23.62 0.25 -4.74 16 19 C 0.02 0.40 6.85 40.98 0.28 0.68 16 20 C -0.08 -0.94 10.06 71.24 0.72 -0.23 16 21 N -0.43 -8.65 2.69 -495.49 -1.33 -9.98 16 22 C 0.13 1.47 5.65 86.38 0.49 1.95 16 23 C -0.18 -2.01 6.01 -10.80 -0.06 -2.08 16 24 C -0.18 -1.80 9.98 30.59 0.31 -1.49 16 25 C -0.15 -1.02 10.25 30.59 0.31 -0.71 16 26 C 0.10 2.79 6.89 41.78 0.29 3.08 16 27 C -0.09 -2.13 9.27 71.24 0.66 -1.47 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.53 6.64 -2.38 -0.02 1.51 16 30 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.05 2.00 7.83 -2.38 -0.02 1.98 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.07 3.89 5.52 -2.39 -0.01 3.88 16 35 H 0.04 1.88 7.86 -2.38 -0.02 1.86 16 36 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 37 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 14.09 7.60 -92.71 -0.70 13.39 16 39 H 0.15 3.63 7.70 -2.91 -0.02 3.61 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.08 0.67 6.94 -2.39 -0.02 0.65 16 43 H 0.12 0.86 6.90 -2.39 -0.02 0.84 16 44 H 0.10 1.00 7.22 -2.39 -0.02 0.98 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.10 0.87 8.03 -2.39 -0.02 0.85 16 47 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.11 0.43 8.14 -2.39 -0.02 0.42 16 50 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.09 1.56 7.38 -2.39 -0.02 1.54 16 52 H 0.07 2.25 6.44 -2.39 -0.02 2.24 16 Total: -1.00 -72.85 418.32 4.08 -68.77 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.20 Total: 27.09 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 7.29 Total: 9.48 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -5.38 Total: -125.47 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.85 4.08 -68.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267255472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.612 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds