Wall clock time and date at job start Tue Mar 31 2020 18:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46851 * 2 1 4 4 C 1.36448 * 124.84717 * 270.02109 * 3 2 1 5 5 C 1.50704 * 125.57347 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85425 * 179.68727 * 4 3 2 7 7 C 1.46686 * 106.33369 * 0.44132 * 6 4 3 8 8 C 1.47267 * 126.94499 * 179.83177 * 7 6 4 9 9 O 1.21628 * 120.00166 * 179.68536 * 8 7 6 10 10 N 1.34776 * 119.99538 * 359.67704 * 8 7 6 11 11 C 1.47022 * 125.65133 * 0.04500 * 10 8 7 12 12 C 1.54329 * 107.26982 * 178.90462 * 11 10 8 13 13 C 1.55163 * 102.94157 * 337.80839 * 12 11 10 14 14 H 1.09000 * 111.03545 * 277.41288 * 13 12 11 15 15 C 1.52993 * 111.00185 * 153.57898 * 13 12 11 16 16 N 1.46495 * 109.47565 * 72.80267 * 15 13 12 17 17 C 1.46500 * 120.00190 * 89.99767 * 16 15 13 18 18 C 1.36942 * 120.00043 * 270.00331 * 16 15 13 19 19 H 1.08004 * 120.00031 * 22.83720 * 18 16 15 20 20 C 1.38814 * 119.99927 * 202.84592 * 18 16 15 21 21 N 1.31618 * 120.00030 * 13.22843 * 20 18 16 22 22 Si 1.86799 * 119.99900 * 193.22932 * 20 18 16 23 23 H 1.48500 * 109.47342 * 59.99511 * 22 20 18 24 24 H 1.48503 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47155 * 299.99895 * 22 20 18 26 26 C 1.47424 * 125.64325 * 180.02562 * 10 8 7 27 27 C 1.34658 * 124.85591 * 89.99836 * 3 2 1 28 28 C 1.50705 * 125.79616 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47358 * 299.99876 * 1 2 3 31 31 H 1.09001 * 109.47181 * 60.00207 * 1 2 3 32 32 H 1.08990 * 109.47223 * 239.99764 * 2 1 3 33 33 H 1.09002 * 109.47375 * 119.99282 * 2 1 3 34 34 H 1.09000 * 109.46782 * 90.00286 * 5 4 3 35 35 H 1.08995 * 109.47105 * 209.99622 * 5 4 3 36 36 H 1.08995 * 109.46892 * 330.00149 * 5 4 3 37 37 H 1.08002 * 126.83739 * 180.26408 * 6 4 3 38 38 H 1.08996 * 109.88323 * 298.31838 * 11 10 8 39 39 H 1.08999 * 109.88025 * 59.48650 * 11 10 8 40 40 H 1.08996 * 110.71812 * 219.44564 * 12 11 10 41 41 H 1.09004 * 110.71918 * 96.16917 * 12 11 10 42 42 H 1.09007 * 109.47288 * 312.79657 * 15 13 12 43 43 H 1.09000 * 109.47141 * 192.80503 * 15 13 12 44 44 H 1.08995 * 109.47219 * 95.13035 * 17 16 15 45 45 H 1.08998 * 109.46828 * 335.12824 * 17 16 15 46 46 H 1.09006 * 109.47106 * 215.12933 * 17 16 15 47 47 H 0.97003 * 120.00250 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36817 * 85.32952 * 26 10 8 49 49 H 1.08997 * 110.37115 * 323.00460 * 26 10 8 50 50 H 1.09003 * 109.46831 * 269.99647 * 28 27 3 51 51 H 1.09001 * 109.47545 * 30.00195 * 28 27 3 52 52 H 1.08998 * 109.46787 * 150.00231 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2777 2.1165 -1.1198 5 6 2.1094 1.6403 -2.5397 6 6 2.7022 3.3376 -0.7493 7 6 2.7115 3.3436 0.7175 8 6 3.1053 4.4584 1.5956 9 8 3.0590 4.3264 2.8039 10 7 3.5171 5.6247 1.0603 11 6 3.6199 5.9192 -0.3764 12 6 4.1056 7.3778 -0.5115 13 6 3.7074 8.0043 0.8511 14 1 2.6611 8.3099 0.8503 15 6 4.6194 9.1819 1.2006 16 7 4.2913 10.3246 0.3446 17 6 3.2822 11.2958 0.7742 18 6 4.9279 10.4848 -0.8572 19 1 5.3749 9.6336 -1.3493 20 6 4.9988 11.7413 -1.4429 21 7 4.6940 12.8125 -0.7415 22 14 5.5268 11.9119 -3.2266 23 1 4.5836 11.1636 -4.0959 24 1 5.5203 13.3466 -3.6098 25 1 6.8959 11.3610 -3.3924 26 6 3.9387 6.8166 1.8186 27 6 2.2747 2.1069 1.1050 28 6 2.1078 1.6363 2.5269 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.0998 1.8677 -2.8819 35 1 2.8325 2.1452 -3.1803 36 1 2.2742 0.5638 -2.5838 37 1 2.9833 4.1510 -1.4018 38 1 4.3382 5.2447 -0.8426 39 1 2.6437 5.8083 -0.8483 40 1 3.5930 7.8805 -1.3316 41 1 5.1861 7.4132 -0.6511 42 1 5.6592 8.8958 1.0421 43 1 4.4736 9.4568 2.2453 44 1 3.7729 12.1376 1.2627 45 1 2.5947 10.8201 1.4736 46 1 2.7281 11.6523 -0.0942 47 1 4.7432 13.6906 -1.1509 48 1 4.9933 6.7436 2.0846 49 1 3.3279 6.9323 2.7140 50 1 1.0987 1.8658 2.8694 51 1 2.2719 0.5598 2.5751 52 1 2.8320 2.1431 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267586142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:09 Heat of formation + Delta-G solvation = 34.063278 kcal Electronic energy + Delta-G solvation = -29297.931507 eV Core-core repulsion = 25491.932535 eV Total energy + Delta-G solvation = -3805.998972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67456 -39.43620 -37.30020 -35.26742 -34.40388 -32.83738 -32.15147 -30.49900 -29.74629 -29.29774 -28.73788 -26.13438 -25.63962 -24.81022 -23.85324 -22.90070 -21.35705 -21.05680 -19.77902 -19.54767 -17.91879 -16.98616 -16.74272 -16.17579 -15.69650 -15.47388 -15.21094 -14.81494 -14.54996 -13.94659 -13.81144 -13.56025 -13.47781 -13.37372 -13.21035 -13.13075 -13.04028 -12.84506 -12.78914 -12.56247 -12.36482 -12.24771 -12.05279 -11.84696 -11.70334 -11.51879 -11.41467 -11.23915 -10.94740 -10.75989 -10.56958 -10.35431 -10.19453 -10.07352 -9.74951 -9.71686 -9.57123 -8.70333 -8.49312 -8.37163 -7.99286 -6.67324 -5.66411 -3.12687 1.74992 2.29322 2.55764 3.39414 3.41565 3.46848 3.47186 3.70743 4.22079 4.42753 4.52972 4.53485 4.65565 4.70062 4.88587 4.97516 5.08278 5.09365 5.12185 5.15020 5.28045 5.33796 5.36875 5.46221 5.51084 5.52132 5.54854 5.61122 5.64054 5.74000 5.80914 5.86634 5.91905 5.99437 6.10823 6.16914 6.29030 6.40068 6.48856 6.62101 6.69891 6.75961 6.78213 6.83889 7.01538 7.03090 7.12655 7.43564 7.78891 7.85836 7.89096 8.45783 8.54074 9.29646 9.93903 10.43585 11.38440 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.002530 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.261209 B =11064.202020 C =12191.793910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.005 3.995 5 C -0.082 4.082 6 C -0.171 4.171 7 C -0.226 4.226 8 C 0.603 3.397 9 O -0.561 6.561 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.115 4.115 13 C -0.116 4.116 14 H 0.075 0.925 15 C 0.162 3.838 16 N -0.600 5.600 17 C 0.162 3.838 18 C -0.250 4.250 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.908 5.908 22 Si 0.902 3.098 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.284 1.284 26 C 0.112 3.888 27 C 0.102 3.898 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.155 0.845 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.030 0.970 45 H -0.003 1.003 46 H 0.039 0.961 47 H 0.252 0.748 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.059 0.941 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -26.870 -0.333 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.195 4.195 7 C -0.236 4.236 8 C 0.395 3.605 9 O -0.442 6.442 10 N -0.342 5.342 11 C -0.024 4.024 12 C -0.153 4.153 13 C -0.138 4.138 14 H 0.094 0.906 15 C 0.034 3.966 16 N -0.323 5.323 17 C 0.018 3.982 18 C -0.379 4.379 19 H 0.087 0.913 20 C -0.199 4.199 21 N -0.554 5.554 22 Si 0.732 3.268 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.210 1.210 26 C -0.011 4.011 27 C -0.015 4.015 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.173 0.827 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.016 0.984 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.503 -27.121 0.241 28.141 hybrid contribution 0.200 0.198 -1.213 1.245 sum -7.303 -26.923 -0.972 27.913 Atomic orbital electron populations 1.22150 0.94188 1.02950 1.03418 1.21849 0.95703 0.80880 1.04335 1.43626 1.51048 1.11766 1.05128 1.20231 1.08752 0.92695 0.88566 1.20307 1.02867 1.00952 0.89790 1.22381 1.06722 0.96856 0.93500 1.20044 1.15600 0.94668 0.93245 1.16985 0.76287 0.80652 0.86604 1.90701 1.56707 1.82106 1.14661 1.48271 1.65246 1.12688 1.07948 1.22420 1.00529 0.97844 0.81616 1.22631 1.01755 0.91861 0.99046 1.23162 1.02002 0.95039 0.93627 0.90619 1.20627 0.95679 0.86922 0.93359 1.43857 1.43662 1.25214 1.19522 1.20782 0.89481 0.91238 0.96740 1.19151 1.30815 0.92561 0.95416 0.91278 1.25026 1.00821 0.95521 0.98511 1.70064 1.53381 0.97244 1.34687 0.86383 0.78506 0.76619 0.85314 1.21151 1.21775 1.21007 1.22305 0.99584 0.83641 0.95542 1.20206 1.01141 0.91080 0.89033 1.20538 1.04179 1.00358 0.89724 0.90717 0.91722 0.91751 0.89156 0.89169 0.91168 0.90042 0.92049 0.82739 0.91687 0.91560 0.89609 0.90804 0.93197 0.94351 0.95158 0.98432 0.94215 0.93815 0.91723 0.91011 0.90719 0.92244 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.09 0.56 6.30 -4.04 -0.03 0.53 16 3 N -0.44 -4.30 2.69 -107.96 -0.29 -4.59 16 4 C 0.00 0.05 6.85 -81.86 -0.56 -0.51 16 5 C -0.08 -0.55 10.06 36.01 0.36 -0.19 16 6 C -0.17 -2.11 9.28 -37.50 -0.35 -2.46 16 7 C -0.23 -3.28 6.23 -103.35 -0.64 -3.92 16 8 C 0.60 10.21 7.84 -12.59 -0.10 10.11 16 9 O -0.56 -10.70 15.07 5.25 0.08 -10.62 16 10 N -0.61 -9.79 3.33 -171.83 -0.57 -10.36 16 11 C 0.10 1.39 4.99 -3.06 -0.02 1.38 16 12 C -0.12 -1.86 5.29 -24.89 -0.13 -1.99 16 13 C -0.12 -2.02 3.26 -88.46 -0.29 -2.31 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 15 C 0.16 3.26 5.17 -4.05 -0.02 3.24 16 16 N -0.60 -14.77 2.91 -181.12 -0.53 -15.30 16 17 C 0.16 4.01 8.98 59.85 0.54 4.54 16 18 C -0.25 -6.63 9.16 -15.06 -0.14 -6.76 16 19 H 0.07 1.76 7.10 -52.48 -0.37 1.39 16 20 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 21 N -0.91 -26.50 10.71 55.49 0.59 -25.91 16 22 Si 0.90 21.60 29.57 -169.99 -5.03 16.58 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.11 1.82 6.38 -2.52 -0.02 1.81 16 27 C 0.10 1.25 6.89 -81.88 -0.56 0.69 16 28 C -0.09 -0.95 9.52 36.01 0.34 -0.60 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.39 6.90 -51.93 -0.36 0.04 16 33 H 0.09 0.44 6.88 -51.93 -0.36 0.08 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.32 6.94 -51.93 -0.36 -0.04 16 37 H 0.16 1.76 4.79 -52.49 -0.25 1.50 16 38 H 0.06 0.83 7.03 -51.93 -0.36 0.47 16 39 H 0.07 0.89 6.82 -51.93 -0.35 0.53 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.22 7.76 -51.93 -0.40 0.81 16 42 H 0.05 1.01 7.87 -51.93 -0.41 0.60 16 43 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 44 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 45 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 46 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 49 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 52 H 0.10 1.27 6.47 -51.93 -0.34 0.94 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -32.89 402.88 -9.86 -42.75 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.88 Total: -1.57 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.32 Total: 2.95 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.79 Total: -56.15 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.89 -9.86 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267586142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.813 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds