Wall clock time and date at job start Tue Mar 31 2020 18:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46851 * 2 1 4 4 C 1.36448 * 124.84717 * 270.02109 * 3 2 1 5 5 C 1.50704 * 125.57347 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85425 * 179.68727 * 4 3 2 7 7 C 1.46686 * 106.33369 * 0.44132 * 6 4 3 8 8 C 1.47267 * 126.94499 * 179.83177 * 7 6 4 9 9 O 1.21628 * 120.00166 * 179.68536 * 8 7 6 10 10 N 1.34776 * 119.99538 * 359.67704 * 8 7 6 11 11 C 1.47022 * 125.65133 * 0.04500 * 10 8 7 12 12 C 1.54329 * 107.26982 * 178.90462 * 11 10 8 13 13 C 1.55163 * 102.94157 * 337.80839 * 12 11 10 14 14 H 1.09000 * 111.03545 * 277.41288 * 13 12 11 15 15 C 1.52993 * 111.00185 * 153.57898 * 13 12 11 16 16 N 1.46495 * 109.47565 * 72.80267 * 15 13 12 17 17 C 1.46500 * 120.00190 * 89.99767 * 16 15 13 18 18 C 1.36942 * 120.00043 * 270.00331 * 16 15 13 19 19 H 1.08004 * 120.00031 * 22.83720 * 18 16 15 20 20 C 1.38814 * 119.99927 * 202.84592 * 18 16 15 21 21 N 1.31618 * 120.00030 * 13.22843 * 20 18 16 22 22 Si 1.86799 * 119.99900 * 193.22932 * 20 18 16 23 23 H 1.48500 * 109.47342 * 59.99511 * 22 20 18 24 24 H 1.48503 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47155 * 299.99895 * 22 20 18 26 26 C 1.47424 * 125.64325 * 180.02562 * 10 8 7 27 27 C 1.34658 * 124.85591 * 89.99836 * 3 2 1 28 28 C 1.50705 * 125.79616 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47358 * 299.99876 * 1 2 3 31 31 H 1.09001 * 109.47181 * 60.00207 * 1 2 3 32 32 H 1.08990 * 109.47223 * 239.99764 * 2 1 3 33 33 H 1.09002 * 109.47375 * 119.99282 * 2 1 3 34 34 H 1.09000 * 109.46782 * 90.00286 * 5 4 3 35 35 H 1.08995 * 109.47105 * 209.99622 * 5 4 3 36 36 H 1.08995 * 109.46892 * 330.00149 * 5 4 3 37 37 H 1.08002 * 126.83739 * 180.26408 * 6 4 3 38 38 H 1.08996 * 109.88323 * 298.31838 * 11 10 8 39 39 H 1.08999 * 109.88025 * 59.48650 * 11 10 8 40 40 H 1.08996 * 110.71812 * 219.44564 * 12 11 10 41 41 H 1.09004 * 110.71918 * 96.16917 * 12 11 10 42 42 H 1.09007 * 109.47288 * 312.79657 * 15 13 12 43 43 H 1.09000 * 109.47141 * 192.80503 * 15 13 12 44 44 H 1.08995 * 109.47219 * 95.13035 * 17 16 15 45 45 H 1.08998 * 109.46828 * 335.12824 * 17 16 15 46 46 H 1.09006 * 109.47106 * 215.12933 * 17 16 15 47 47 H 0.97003 * 120.00250 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36817 * 85.32952 * 26 10 8 49 49 H 1.08997 * 110.37115 * 323.00460 * 26 10 8 50 50 H 1.09003 * 109.46831 * 269.99647 * 28 27 3 51 51 H 1.09001 * 109.47545 * 30.00195 * 28 27 3 52 52 H 1.08998 * 109.46787 * 150.00231 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2777 2.1165 -1.1198 5 6 2.1094 1.6403 -2.5397 6 6 2.7022 3.3376 -0.7493 7 6 2.7115 3.3436 0.7175 8 6 3.1053 4.4584 1.5956 9 8 3.0590 4.3264 2.8039 10 7 3.5171 5.6247 1.0603 11 6 3.6199 5.9192 -0.3764 12 6 4.1056 7.3778 -0.5115 13 6 3.7074 8.0043 0.8511 14 1 2.6611 8.3099 0.8503 15 6 4.6194 9.1819 1.2006 16 7 4.2913 10.3246 0.3446 17 6 3.2822 11.2958 0.7742 18 6 4.9279 10.4848 -0.8572 19 1 5.3749 9.6336 -1.3493 20 6 4.9988 11.7413 -1.4429 21 7 4.6940 12.8125 -0.7415 22 14 5.5268 11.9119 -3.2266 23 1 4.5836 11.1636 -4.0959 24 1 5.5203 13.3466 -3.6098 25 1 6.8959 11.3610 -3.3924 26 6 3.9387 6.8166 1.8186 27 6 2.2747 2.1069 1.1050 28 6 2.1078 1.6363 2.5269 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.0998 1.8677 -2.8819 35 1 2.8325 2.1452 -3.1803 36 1 2.2742 0.5638 -2.5838 37 1 2.9833 4.1510 -1.4018 38 1 4.3382 5.2447 -0.8426 39 1 2.6437 5.8083 -0.8483 40 1 3.5930 7.8805 -1.3316 41 1 5.1861 7.4132 -0.6511 42 1 5.6592 8.8958 1.0421 43 1 4.4736 9.4568 2.2453 44 1 3.7729 12.1376 1.2627 45 1 2.5947 10.8201 1.4736 46 1 2.7281 11.6523 -0.0942 47 1 4.7432 13.6906 -1.1509 48 1 4.9933 6.7436 2.0846 49 1 3.3279 6.9323 2.7140 50 1 1.0987 1.8658 2.8694 51 1 2.2719 0.5598 2.5751 52 1 2.8320 2.1431 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267586142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:08 Heat of formation + Delta-G solvation = 16.537961 kcal Electronic energy + Delta-G solvation = -29298.691461 eV Core-core repulsion = 25491.932535 eV Total energy + Delta-G solvation = -3806.758927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.50719 -40.69969 -38.72227 -37.04483 -35.06525 -33.84212 -33.57957 -32.17242 -30.68768 -30.08781 -29.87074 -27.93934 -27.27263 -25.93161 -24.58045 -23.98927 -23.08572 -22.02804 -21.05895 -20.76808 -18.93149 -18.65012 -17.97440 -17.29886 -16.83814 -16.71865 -16.32775 -16.17655 -15.64662 -15.22775 -15.12732 -14.86699 -14.61318 -14.43303 -14.40758 -14.11423 -14.07326 -13.79814 -13.71699 -13.63248 -13.47460 -13.15138 -13.12209 -12.96451 -12.84669 -12.69319 -12.58948 -12.52121 -12.26208 -12.23804 -12.12920 -12.08457 -11.96732 -11.70605 -11.54131 -11.31113 -10.85782 -10.55016 -9.70144 -9.48906 -8.89006 -8.70241 -7.74759 -5.23139 0.74038 1.44991 1.51009 1.53202 1.59149 1.80806 2.22842 2.54690 2.57252 3.38020 3.49673 3.75227 3.78247 3.79555 3.86886 3.95096 4.06729 4.10873 4.16244 4.31694 4.35811 4.39858 4.44512 4.50065 4.60532 4.67104 4.67779 4.68846 4.76971 4.82062 4.84740 4.87640 4.87952 4.92443 4.94826 5.06402 5.07184 5.13502 5.14593 5.23540 5.28461 5.33043 5.37082 5.46952 5.53315 5.71319 5.76493 5.85299 6.16962 6.39419 6.40159 6.64969 7.22068 7.28314 7.94167 8.39809 9.28983 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.002530 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.261209 B =11064.202020 C =12191.793910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.014 3.986 5 C -0.080 4.080 6 C -0.194 4.194 7 C -0.264 4.264 8 C 0.595 3.405 9 O -0.594 6.594 10 N -0.614 5.614 11 C 0.110 3.890 12 C -0.110 4.110 13 C -0.104 4.104 14 H 0.064 0.936 15 C 0.162 3.838 16 N -0.615 5.615 17 C 0.176 3.824 18 C -0.247 4.247 19 H 0.080 0.920 20 C -0.061 4.061 21 N -0.944 5.944 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.275 1.275 26 C 0.119 3.881 27 C 0.098 3.902 28 C -0.086 4.086 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.003 0.997 45 H 0.026 0.974 46 H 0.015 0.985 47 H 0.245 0.755 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -30.386 -2.057 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.108 5.108 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.217 4.217 7 C -0.274 4.274 8 C 0.389 3.611 9 O -0.478 6.478 10 N -0.346 5.346 11 C -0.012 4.012 12 C -0.148 4.148 13 C -0.126 4.126 14 H 0.083 0.917 15 C 0.036 3.964 16 N -0.338 5.338 17 C 0.031 3.969 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.255 4.255 21 N -0.592 5.592 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.201 1.201 26 C -0.004 4.004 27 C -0.021 4.021 28 C -0.143 4.143 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.022 0.978 45 H 0.044 0.956 46 H 0.034 0.966 47 H 0.054 0.946 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.842 -30.696 -1.500 31.717 hybrid contribution 0.270 1.165 -0.620 1.347 sum -7.572 -29.531 -2.120 30.559 Atomic orbital electron populations 1.22126 0.93532 1.04230 1.02377 1.22231 0.96194 0.78809 1.06225 1.43919 1.49717 1.12939 1.04226 1.20757 1.06556 0.92037 0.90124 1.20427 1.03669 1.02307 0.87334 1.22480 1.08447 0.98283 0.92512 1.20070 1.18225 0.94930 0.94200 1.17463 0.75780 0.81247 0.86637 1.90668 1.58255 1.82757 1.16085 1.48332 1.65196 1.12425 1.08624 1.22397 1.01476 0.96592 0.80750 1.22550 1.01524 0.92991 0.97719 1.22846 1.00481 0.94322 0.94924 0.91738 1.20741 0.96261 0.86326 0.93092 1.44096 1.43668 1.26153 1.19877 1.20519 0.89549 0.90869 0.95943 1.19538 1.29483 0.92695 0.95990 0.90186 1.25811 1.01949 0.95450 1.02315 1.70245 1.55484 0.97352 1.36104 0.85366 0.78519 0.75901 0.80843 1.20230 1.22783 1.20064 1.22150 0.99750 0.83540 0.94999 1.20422 1.00425 0.90882 0.90333 1.20492 1.03464 1.01976 0.88415 0.88279 0.93181 0.92363 0.86842 0.87797 0.90188 0.89369 0.89952 0.82350 0.89948 0.90620 0.90589 0.90941 0.93120 0.93637 0.97838 0.95575 0.96636 0.94611 0.91237 0.91745 0.90468 0.89129 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.24 71.98 0.74 -0.46 16 2 C 0.09 0.70 6.30 86.38 0.54 1.25 16 3 N -0.43 -7.40 2.69 -495.48 -1.33 -8.73 16 4 C 0.01 0.24 6.85 40.98 0.28 0.53 16 5 C -0.08 -0.80 10.06 71.24 0.72 -0.08 16 6 C -0.19 -4.53 9.28 23.62 0.22 -4.31 16 7 C -0.26 -7.57 6.23 -19.04 -0.12 -7.69 16 8 C 0.60 20.38 7.84 86.62 0.68 21.06 16 9 O -0.59 -23.34 15.07 -4.12 -0.06 -23.40 16 10 N -0.61 -19.60 3.33 -815.80 -2.71 -22.32 16 11 C 0.11 2.98 4.99 86.73 0.43 3.41 16 12 C -0.11 -3.44 5.29 31.79 0.17 -3.28 16 13 C -0.10 -3.57 3.26 -9.40 -0.03 -3.60 16 14 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.16 6.48 5.17 86.38 0.45 6.92 16 16 N -0.62 -30.37 2.91 -726.94 -2.11 -32.49 16 17 C 0.18 8.86 8.98 127.77 1.15 10.01 16 18 C -0.25 -13.06 9.16 84.03 0.77 -12.29 16 19 H 0.08 3.99 7.10 -2.91 -0.02 3.97 16 20 C -0.06 -3.39 5.10 84.86 0.43 -2.96 16 21 N -0.94 -56.37 10.71 21.65 0.23 -56.14 16 22 Si 0.97 44.58 29.57 68.60 2.03 46.61 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.12 3.85 6.38 86.86 0.55 4.41 16 27 C 0.10 2.29 6.89 41.78 0.29 2.58 16 28 C -0.09 -1.73 9.52 71.24 0.68 -1.05 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.46 6.90 -2.39 -0.02 0.44 16 33 H 0.10 0.61 6.88 -2.39 -0.02 0.59 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.49 6.94 -2.39 -0.02 0.47 16 37 H 0.16 3.36 4.79 -2.91 -0.01 3.35 16 38 H 0.08 1.98 7.03 -2.39 -0.02 1.96 16 39 H 0.08 1.93 6.82 -2.39 -0.02 1.92 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.07 2.30 7.76 -2.39 -0.02 2.28 16 42 H 0.05 2.01 7.87 -2.38 -0.02 1.99 16 43 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 44 H 0.00 0.18 7.34 -2.39 -0.02 0.17 16 45 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 46 H 0.01 0.82 7.34 -2.38 -0.02 0.80 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.55 16 48 H 0.07 2.18 8.04 -2.39 -0.02 2.17 16 49 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 50 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.09 1.17 6.92 -2.39 -0.02 1.15 16 52 H 0.07 1.93 6.47 -2.39 -0.02 1.92 16 Total: -1.00 -72.72 402.88 4.88 -67.84 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.90 Total: 14.17 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 7.94 Total: 14.46 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.93 Total: -119.67 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.72 4.88 -67.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267586142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.374 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds