Wall clock time and date at job start Tue Mar 31 2020 17:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50696 * 109.47344 * 64.99877 * 4 2 1 6 6 O 1.21278 * 119.99753 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.63284 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77853 * 233.58429 * 8 7 5 10 10 C 1.53044 * 109.31180 * 305.36586 * 9 8 7 11 11 C 1.53038 * 109.53880 * 61.36146 * 10 9 8 12 12 H 1.09000 * 109.49708 * 58.62077 * 11 10 9 13 13 C 1.52999 * 109.49779 * 178.68391 * 11 10 9 14 14 C 1.52994 * 109.47322 * 295.00323 * 13 11 10 15 15 N 1.46496 * 109.47542 * 179.97438 * 14 13 11 16 16 C 1.36938 * 120.00600 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99579 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00311 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99641 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99959 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47166 * 90.00196 * 20 18 16 22 22 H 1.48504 * 109.46641 * 210.00651 * 20 18 16 23 23 H 1.48499 * 109.46990 * 330.00005 * 20 18 16 24 24 C 1.46930 * 120.63001 * 179.71894 * 7 5 4 25 25 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 26 26 C 1.36343 * 125.63002 * 59.69472 * 25 2 1 27 27 C 1.34852 * 108.21209 * 179.82905 * 26 25 2 28 28 C 1.40892 * 107.41919 * 0.42551 * 27 26 25 29 29 C 1.34847 * 107.41457 * 359.73324 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 34 34 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 35 35 H 1.09003 * 109.58651 * 353.37086 * 8 7 5 36 36 H 1.09004 * 109.58903 * 113.64896 * 8 7 5 37 37 H 1.09005 * 109.49551 * 65.31552 * 9 8 7 38 38 H 1.09000 * 109.49959 * 185.41521 * 9 8 7 39 39 H 1.09004 * 109.46168 * 181.38528 * 10 9 8 40 40 H 1.09005 * 109.45448 * 301.34085 * 10 9 8 41 41 H 1.09006 * 109.46879 * 55.00041 * 13 11 10 42 42 H 1.08994 * 109.47298 * 175.00076 * 13 11 10 43 43 H 1.08995 * 109.47286 * 300.00003 * 14 13 11 44 44 H 1.09005 * 109.47570 * 59.99510 * 14 13 11 45 45 H 0.96998 * 119.99713 * 0.02562 * 15 14 13 46 46 H 0.97009 * 120.00099 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58628 * 246.20380 * 24 7 5 48 48 H 1.08997 * 109.58482 * 6.63339 * 24 7 5 49 49 H 1.07997 * 125.89520 * 359.95915 * 26 25 2 50 50 H 1.08001 * 126.29543 * 180.16279 * 27 26 25 51 51 H 1.08001 * 126.29231 * 179.73866 * 28 27 26 52 52 H 1.08005 * 125.88892 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0874 -2.3632 7 7 1.9851 -0.3913 -3.7001 8 6 2.7482 -1.6375 -3.8535 9 6 3.9922 -1.3528 -4.7010 10 6 3.5676 -0.7090 -6.0229 11 6 2.8605 0.6188 -5.7417 12 1 3.5317 1.2793 -5.1927 13 6 2.4656 1.2773 -7.0650 14 6 3.7274 1.6487 -7.8464 15 7 3.3493 2.2787 -9.1138 16 6 4.3181 2.6986 -9.9857 17 1 5.3612 2.5657 -9.7387 18 6 3.9598 3.2961 -11.1863 19 7 4.8911 3.6992 -12.0244 20 14 2.1559 3.5266 -11.6131 21 1 1.6915 4.8427 -11.1058 22 1 1.9858 3.4762 -13.0875 23 1 1.3565 2.4440 -10.9853 24 6 1.5984 0.3532 -4.9063 25 7 2.0183 -0.6906 1.1962 26 6 1.7559 -1.9868 1.5278 27 6 2.3800 -2.2587 2.6919 28 6 3.0441 -1.0846 3.0986 29 6 2.8055 -0.1418 2.1646 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 3.0505 -2.0040 -2.8725 36 1 2.1297 -2.3862 -4.3486 37 1 4.6525 -0.6740 -4.1612 38 1 4.5163 -2.2869 -4.9031 39 1 4.4490 -0.5279 -6.6382 40 1 2.8877 -1.3779 -6.5506 41 1 1.8660 0.5817 -7.6523 42 1 1.8847 2.1774 -6.8638 43 1 4.3269 2.3442 -7.2592 44 1 4.3083 0.7485 -8.0477 45 1 2.4126 2.3991 -9.3351 46 1 4.6408 4.1164 -12.8637 47 1 0.8891 -0.2359 -5.4876 48 1 1.1417 1.3006 -4.6201 49 1 1.1540 -2.6773 0.9557 50 1 2.3689 -3.2018 3.2181 51 1 3.6357 -0.9623 3.9939 52 1 3.1746 0.8731 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267897995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:31 Heat of formation + Delta-G solvation = 17.015349 kcal Electronic energy + Delta-G solvation = -28499.813943 eV Core-core repulsion = 24693.075718 eV Total energy + Delta-G solvation = -3806.738226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61749 -40.55413 -38.25930 -35.63624 -35.38089 -33.66111 -32.15408 -31.22216 -30.22926 -29.07315 -28.80397 -27.62527 -25.64714 -24.12105 -23.00146 -22.34867 -21.41133 -20.78014 -20.29146 -19.84961 -19.06810 -18.16817 -17.51222 -16.81888 -16.34526 -16.02414 -15.09064 -14.97444 -14.88426 -14.61504 -14.51461 -14.18587 -13.98998 -13.79031 -13.65678 -13.36632 -13.32015 -13.10699 -12.97197 -12.68717 -12.55893 -12.42171 -12.35749 -12.14229 -11.84083 -11.66941 -11.57235 -11.43732 -11.19542 -11.13768 -10.84562 -10.69397 -10.58079 -10.34592 -10.13146 -10.03548 -9.59979 -8.94709 -8.90419 -8.86029 -8.43148 -7.22991 -5.77416 -3.12784 1.98917 2.22073 2.37637 2.80225 2.84008 3.36767 3.39811 3.44596 4.00299 4.08948 4.29877 4.42931 4.58673 4.64366 4.64675 4.67805 4.73432 4.76811 4.91833 4.94582 4.99361 5.02022 5.07707 5.23571 5.26754 5.32768 5.40190 5.44157 5.46507 5.51051 5.51414 5.59443 5.59805 5.76313 5.79584 5.81387 5.92653 5.98724 6.02374 6.06182 6.10720 6.17884 6.21537 6.34445 6.72765 6.73194 6.77495 6.97068 7.03579 7.10111 7.78031 7.99041 8.41734 9.21116 9.93657 10.13608 11.41031 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.001883 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.484115 B =14869.868116 C =15179.934878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.107 0.893 4 C -0.151 4.151 5 C 0.520 3.480 6 O -0.538 6.538 7 N -0.607 5.607 8 C 0.104 3.896 9 C -0.135 4.135 10 C -0.119 4.119 11 C -0.094 4.094 12 H 0.076 0.924 13 C -0.124 4.124 14 C 0.158 3.842 15 N -0.758 5.758 16 C -0.244 4.244 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.115 3.885 25 N -0.443 5.443 26 C -0.016 4.016 27 C -0.203 4.203 28 C -0.204 4.204 29 C -0.014 4.014 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.028 0.972 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.133 0.867 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 -15.431 28.506 33.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.125 0.875 4 C -0.191 4.191 5 C 0.307 3.693 6 O -0.416 6.416 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.173 4.173 10 C -0.157 4.157 11 C -0.114 4.114 12 H 0.094 0.906 13 C -0.163 4.163 14 C 0.031 3.969 15 N -0.403 5.403 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.007 4.007 25 N -0.119 5.119 26 C -0.146 4.146 27 C -0.228 4.228 28 C -0.229 4.229 29 C -0.144 4.144 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.151 0.849 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.476 -14.662 28.155 32.612 hybrid contribution -1.074 0.076 -0.498 1.186 sum -8.550 -14.586 27.657 32.416 Atomic orbital electron populations 1.22283 0.92755 1.02791 1.04534 1.21105 0.96065 0.96691 0.81536 0.87527 1.22035 1.03806 1.00793 0.92471 1.20246 0.79333 0.85440 0.84232 1.90698 1.40344 1.24462 1.86093 1.48123 1.54839 1.25017 1.06006 1.21834 0.93247 0.85677 1.01092 1.21934 0.96788 1.01694 0.96927 1.21671 1.01443 0.96062 0.96508 1.21523 0.96435 0.97166 0.96294 0.90600 1.21754 0.99493 1.00335 0.94675 1.20643 0.93882 0.95628 0.86735 1.42728 1.05126 1.73589 1.18879 1.19067 0.89601 1.31717 0.97048 0.89287 1.24686 0.96960 1.00797 0.96843 1.69706 1.31189 1.46352 1.11015 0.86523 0.86397 0.78006 0.77457 1.21065 1.21715 1.20362 1.21864 0.96778 0.97595 0.84441 1.44353 1.39164 1.10313 1.18057 1.21715 1.06703 0.86319 0.99826 1.20891 1.04551 0.99339 0.98006 1.20894 1.06876 0.93923 1.01203 1.21879 1.01206 0.99815 0.91467 0.92373 0.91862 0.88654 0.88030 0.88198 0.89983 0.90980 0.91403 0.90486 0.90358 0.91659 0.91797 0.91727 0.95764 0.95401 0.80723 0.93073 0.91276 0.88804 0.82639 0.84973 0.84918 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.97 37.16 0.33 -0.93 16 2 C 0.15 1.11 2.67 -67.93 -0.18 0.93 16 3 H 0.11 0.88 7.88 -51.93 -0.41 0.47 16 4 C -0.15 -1.00 3.52 -27.88 -0.10 -1.09 16 5 C 0.52 4.96 7.41 -10.99 -0.08 4.88 16 6 O -0.54 -6.87 13.38 5.56 0.07 -6.79 16 7 N -0.61 -5.43 2.97 -172.48 -0.51 -5.94 16 8 C 0.10 0.67 6.34 -3.71 -0.02 0.65 16 9 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 10 C -0.12 -1.19 4.95 -26.69 -0.13 -1.32 16 11 C -0.09 -1.07 2.35 -90.26 -0.21 -1.29 16 12 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.12 -1.78 4.80 -26.73 -0.13 -1.91 16 14 C 0.16 2.98 6.02 -4.05 -0.02 2.96 16 15 N -0.76 -18.17 5.41 -59.91 -0.32 -18.49 16 16 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 17 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 20 Si 0.89 22.27 27.73 -169.99 -4.71 17.55 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 24 C 0.12 1.20 5.75 -3.46 -0.02 1.18 16 25 N -0.44 -3.53 2.62 -110.02 -0.29 -3.81 16 26 C -0.02 -0.12 10.45 -16.75 -0.18 -0.30 16 27 C -0.20 -1.70 10.86 -39.78 -0.43 -2.13 16 28 C -0.20 -1.76 10.86 -39.78 -0.43 -2.19 16 29 C -0.01 -0.12 11.39 -16.75 -0.19 -0.31 16 30 H 0.06 0.39 7.91 -51.93 -0.41 -0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.88 5.95 -51.93 -0.31 0.57 16 33 H 0.10 0.62 7.69 -51.92 -0.40 0.22 16 34 H 0.10 0.51 7.86 -51.93 -0.41 0.10 16 35 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.89 6.51 -51.93 -0.34 0.55 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 45 H 0.36 8.41 5.53 -40.82 -0.23 8.18 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 49 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 52 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -33.95 404.03 -10.14 -44.09 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -9.02 Total: 5.33 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.21 Total: -9.21 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.35 Total: -57.04 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.95 -10.14 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267897995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.101 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds