Wall clock time and date at job start Tue Mar 31 2020 17:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50696 * 109.47344 * 64.99877 * 4 2 1 6 6 O 1.21278 * 119.99753 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.63284 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77853 * 233.58429 * 8 7 5 10 10 C 1.53044 * 109.31180 * 305.36586 * 9 8 7 11 11 C 1.53038 * 109.53880 * 61.36146 * 10 9 8 12 12 H 1.09000 * 109.49708 * 58.62077 * 11 10 9 13 13 C 1.52999 * 109.49779 * 178.68391 * 11 10 9 14 14 C 1.52994 * 109.47322 * 295.00323 * 13 11 10 15 15 N 1.46496 * 109.47542 * 179.97438 * 14 13 11 16 16 C 1.36938 * 120.00600 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99579 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00311 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99641 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99959 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47166 * 90.00196 * 20 18 16 22 22 H 1.48504 * 109.46641 * 210.00651 * 20 18 16 23 23 H 1.48499 * 109.46990 * 330.00005 * 20 18 16 24 24 C 1.46930 * 120.63001 * 179.71894 * 7 5 4 25 25 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 26 26 C 1.36343 * 125.63002 * 59.69472 * 25 2 1 27 27 C 1.34852 * 108.21209 * 179.82905 * 26 25 2 28 28 C 1.40892 * 107.41919 * 0.42551 * 27 26 25 29 29 C 1.34847 * 107.41457 * 359.73324 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 34 34 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 35 35 H 1.09003 * 109.58651 * 353.37086 * 8 7 5 36 36 H 1.09004 * 109.58903 * 113.64896 * 8 7 5 37 37 H 1.09005 * 109.49551 * 65.31552 * 9 8 7 38 38 H 1.09000 * 109.49959 * 185.41521 * 9 8 7 39 39 H 1.09004 * 109.46168 * 181.38528 * 10 9 8 40 40 H 1.09005 * 109.45448 * 301.34085 * 10 9 8 41 41 H 1.09006 * 109.46879 * 55.00041 * 13 11 10 42 42 H 1.08994 * 109.47298 * 175.00076 * 13 11 10 43 43 H 1.08995 * 109.47286 * 300.00003 * 14 13 11 44 44 H 1.09005 * 109.47570 * 59.99510 * 14 13 11 45 45 H 0.96998 * 119.99713 * 0.02562 * 15 14 13 46 46 H 0.97009 * 120.00099 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58628 * 246.20380 * 24 7 5 48 48 H 1.08997 * 109.58482 * 6.63339 * 24 7 5 49 49 H 1.07997 * 125.89520 * 359.95915 * 26 25 2 50 50 H 1.08001 * 126.29543 * 180.16279 * 27 26 25 51 51 H 1.08001 * 126.29231 * 179.73866 * 28 27 26 52 52 H 1.08005 * 125.88892 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0874 -2.3632 7 7 1.9851 -0.3913 -3.7001 8 6 2.7482 -1.6375 -3.8535 9 6 3.9922 -1.3528 -4.7010 10 6 3.5676 -0.7090 -6.0229 11 6 2.8605 0.6188 -5.7417 12 1 3.5317 1.2793 -5.1927 13 6 2.4656 1.2773 -7.0650 14 6 3.7274 1.6487 -7.8464 15 7 3.3493 2.2787 -9.1138 16 6 4.3181 2.6986 -9.9857 17 1 5.3612 2.5657 -9.7387 18 6 3.9598 3.2961 -11.1863 19 7 4.8911 3.6992 -12.0244 20 14 2.1559 3.5266 -11.6131 21 1 1.6915 4.8427 -11.1058 22 1 1.9858 3.4762 -13.0875 23 1 1.3565 2.4440 -10.9853 24 6 1.5984 0.3532 -4.9063 25 7 2.0183 -0.6906 1.1962 26 6 1.7559 -1.9868 1.5278 27 6 2.3800 -2.2587 2.6919 28 6 3.0441 -1.0846 3.0986 29 6 2.8055 -0.1418 2.1646 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 3.0505 -2.0040 -2.8725 36 1 2.1297 -2.3862 -4.3486 37 1 4.6525 -0.6740 -4.1612 38 1 4.5163 -2.2869 -4.9031 39 1 4.4490 -0.5279 -6.6382 40 1 2.8877 -1.3779 -6.5506 41 1 1.8660 0.5817 -7.6523 42 1 1.8847 2.1774 -6.8638 43 1 4.3269 2.3442 -7.2592 44 1 4.3083 0.7485 -8.0477 45 1 2.4126 2.3991 -9.3351 46 1 4.6408 4.1164 -12.8637 47 1 0.8891 -0.2359 -5.4876 48 1 1.1417 1.3006 -4.6201 49 1 1.1540 -2.6773 0.9557 50 1 2.3689 -3.2018 3.2181 51 1 3.6357 -0.9623 3.9939 52 1 3.1746 0.8731 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267897995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:30 Heat of formation + Delta-G solvation = -2.122973 kcal Electronic energy + Delta-G solvation = -28500.643843 eV Core-core repulsion = 24693.075718 eV Total energy + Delta-G solvation = -3807.568126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20680 -41.26936 -39.12323 -37.11783 -36.00697 -35.05501 -33.40759 -32.64311 -30.95570 -29.82855 -29.54800 -28.67209 -26.37689 -25.60962 -23.82092 -23.31534 -22.83694 -21.45116 -21.21842 -20.47170 -19.79824 -19.53714 -18.76005 -17.47959 -17.08172 -16.76117 -16.58781 -16.06840 -15.95500 -15.59514 -15.29111 -15.20146 -14.91104 -14.88797 -14.57795 -14.42749 -14.30544 -13.97902 -13.90787 -13.60800 -13.58214 -13.12368 -13.09985 -12.98877 -12.92582 -12.77977 -12.52752 -12.43032 -12.27488 -12.13047 -12.09776 -11.98839 -11.84436 -11.66965 -11.57161 -11.28058 -10.97296 -10.82761 -9.65764 -9.49965 -9.31392 -9.01580 -8.05373 -5.39351 1.36140 1.40284 1.40413 1.47669 1.52443 1.73985 2.20124 2.22137 2.46542 3.25876 3.42555 3.48840 3.53772 3.72311 3.81032 3.86708 3.97381 4.07537 4.10175 4.19305 4.32296 4.39401 4.42745 4.43392 4.45709 4.49857 4.53943 4.62097 4.68209 4.73496 4.76450 4.82669 4.84553 4.86176 4.89071 4.94160 5.00073 5.13423 5.18695 5.21150 5.29759 5.42129 5.45180 5.47959 5.49046 5.52351 5.72731 6.14444 6.18726 6.35381 6.39512 6.53992 7.05417 7.08220 7.81788 8.01229 9.16076 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.001883 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.484115 B =14869.868116 C =15179.934878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.131 4.131 10 C -0.119 4.119 11 C -0.085 4.085 12 H 0.061 0.939 13 C -0.112 4.112 14 C 0.155 3.845 15 N -0.761 5.761 16 C -0.240 4.240 17 H 0.054 0.946 18 C -0.066 4.066 19 N -0.983 5.983 20 Si 0.959 3.041 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.249 1.249 24 C 0.121 3.879 25 N -0.443 5.443 26 C -0.016 4.016 27 C -0.222 4.222 28 C -0.220 4.220 29 C -0.030 4.030 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.013 0.987 44 H 0.031 0.969 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.180 0.820 50 H 0.143 0.857 51 H 0.139 0.861 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -17.867 29.773 35.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.112 0.888 4 C -0.179 4.179 5 C 0.306 3.694 6 O -0.457 6.457 7 N -0.339 5.339 8 C -0.019 4.019 9 C -0.169 4.169 10 C -0.157 4.157 11 C -0.105 4.105 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.029 3.971 15 N -0.407 5.407 16 C -0.371 4.371 17 H 0.072 0.928 18 C -0.257 4.257 19 N -0.634 5.634 20 Si 0.785 3.215 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.173 1.173 24 C -0.002 4.002 25 N -0.119 5.119 26 C -0.146 4.146 27 C -0.247 4.247 28 C -0.245 4.245 29 C -0.160 4.160 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.049 0.951 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.197 0.803 50 H 0.161 0.839 51 H 0.157 0.843 52 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.315 -17.145 29.472 35.345 hybrid contribution -0.382 0.831 -0.834 1.238 sum -9.696 -16.313 28.638 34.356 Atomic orbital electron populations 1.22192 0.92859 1.03308 1.03358 1.21025 0.95899 0.96279 0.81933 0.88848 1.21979 1.04478 1.01186 0.90249 1.20732 0.78619 0.85071 0.85026 1.90692 1.42124 1.26251 1.86639 1.48200 1.54780 1.25585 1.05312 1.22058 0.92571 0.84691 1.02545 1.21907 0.97391 1.02151 0.95428 1.21654 1.00608 0.95463 0.97949 1.21387 0.96931 0.97559 0.94609 0.92055 1.21627 0.97060 1.00757 0.95616 1.20819 0.96248 0.94909 0.85116 1.42760 1.04480 1.73718 1.19731 1.19052 0.89206 1.30960 0.97835 0.92801 1.25573 1.02233 1.01081 0.96838 1.69894 1.33910 1.47917 1.11656 0.85354 0.80355 0.78802 0.76950 1.20535 1.21991 1.17326 1.21658 0.96074 0.97368 0.85104 1.44386 1.39049 1.10496 1.17979 1.22121 1.06330 0.86334 0.99776 1.21168 1.05019 0.99798 0.98685 1.21154 1.07285 0.94373 1.01690 1.22166 1.01589 1.00476 0.91721 0.90962 0.92486 0.90320 0.86941 0.85655 0.87416 0.89281 0.92232 0.88493 0.92277 0.90762 0.90771 0.91991 0.96852 0.95106 0.80063 0.93269 0.90000 0.90789 0.80271 0.83944 0.84269 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.97 71.98 0.65 -1.57 16 2 C 0.15 2.03 2.67 44.99 0.12 2.15 16 3 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 4 C -0.14 -1.44 3.52 29.85 0.10 -1.34 16 5 C 0.52 8.89 7.41 87.66 0.65 9.54 16 6 O -0.58 -14.46 13.38 -3.02 -0.04 -14.50 16 7 N -0.61 -9.36 2.97 -818.00 -2.43 -11.79 16 8 C 0.10 0.93 6.34 86.36 0.55 1.47 16 9 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 10 C -0.12 -2.14 4.95 30.62 0.15 -1.99 16 11 C -0.08 -1.83 2.35 -10.56 -0.02 -1.86 16 12 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 13 C -0.11 -3.08 4.80 30.59 0.15 -2.93 16 14 C 0.15 5.83 6.02 86.38 0.52 6.35 16 15 N -0.76 -36.16 5.41 -343.46 -1.86 -38.01 16 16 C -0.24 -13.99 10.47 84.03 0.88 -13.11 16 17 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 20 Si 0.96 45.76 27.73 68.60 1.90 47.66 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 24 C 0.12 2.32 5.75 86.52 0.50 2.82 16 25 N -0.44 -6.23 2.62 -502.00 -1.31 -7.55 16 26 C -0.02 -0.21 10.45 83.21 0.87 0.66 16 27 C -0.22 -3.34 10.86 22.14 0.24 -3.10 16 28 C -0.22 -3.56 10.86 22.14 0.24 -3.32 16 29 C -0.03 -0.47 11.39 83.21 0.95 0.48 16 30 H 0.07 0.78 7.91 -2.39 -0.02 0.76 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.41 5.95 -2.39 -0.01 1.40 16 33 H 0.11 0.99 7.69 -2.38 -0.02 0.97 16 34 H 0.13 0.70 7.86 -2.39 -0.02 0.68 16 35 H 0.11 0.47 5.93 -2.39 -0.01 0.45 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.29 6.51 -2.39 -0.02 1.27 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 44 H 0.03 1.16 6.54 -2.38 -0.02 1.14 16 45 H 0.37 16.42 5.53 -92.71 -0.51 15.91 16 46 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 49 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 51 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 52 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -75.50 404.03 4.08 -71.43 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.32 Total: 26.81 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 7.19 Total: -10.60 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.29 Total: -120.80 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.04 Total: -14.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -75.50 4.08 -71.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267897995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.305 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds