Wall clock time and date at job start Tue Mar 31 2020 17:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47519 * 2 1 4 4 C 1.53004 * 109.47399 * 239.99665 * 2 1 3 5 5 N 1.46501 * 109.47175 * 185.00122 * 4 2 1 6 6 C 1.36938 * 119.99696 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99810 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00146 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00035 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47028 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47142 * 120.00233 * 10 8 6 13 13 H 1.48500 * 109.47277 * 240.00282 * 10 8 6 14 14 N 1.46501 * 109.47345 * 119.99587 * 2 1 3 15 15 C 1.46502 * 119.99828 * 59.99808 * 14 2 1 16 16 C 1.34779 * 120.00518 * 240.00370 * 14 2 1 17 17 O 1.21552 * 119.99690 * 355.47701 * 16 14 2 18 18 C 1.47845 * 120.00198 * 175.47502 * 16 14 2 19 19 C 1.39568 * 120.14348 * 221.14142 * 18 16 14 20 20 C 1.37960 * 119.85159 * 179.74894 * 19 18 16 21 21 C 1.38353 * 120.14465 * 0.53194 * 20 19 18 22 22 C 1.50699 * 119.85412 * 179.76702 * 21 20 19 23 23 C 1.53004 * 109.47133 * 269.97965 * 22 21 20 24 24 N 1.46902 * 109.47261 * 180.02562 * 23 22 21 25 25 C 1.46897 * 110.99847 * 169.99941 * 24 23 22 26 26 C 1.46895 * 110.99750 * 293.95049 * 24 23 22 27 27 C 1.38356 * 120.29323 * 359.74599 * 21 20 19 28 28 C 1.37962 * 120.14418 * 359.97438 * 27 21 20 29 29 H 1.09004 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47332 * 60.00460 * 1 2 3 31 31 H 1.08995 * 109.47558 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.46965 * 305.00038 * 4 2 1 33 33 H 1.08999 * 109.47006 * 64.99571 * 4 2 1 34 34 H 0.96999 * 120.00284 * 0.02562 * 5 4 2 35 35 H 0.96998 * 119.99822 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47071 * 95.17405 * 15 14 2 37 37 H 1.09002 * 109.47142 * 215.17182 * 15 14 2 38 38 H 1.08997 * 109.47084 * 335.17897 * 15 14 2 39 39 H 1.08002 * 120.07567 * 0.02562 * 19 18 16 40 40 H 1.08000 * 119.92720 * 180.28037 * 20 19 18 41 41 H 1.09002 * 109.47602 * 29.97742 * 22 21 20 42 42 H 1.09002 * 109.47563 * 149.98066 * 22 21 20 43 43 H 1.08998 * 109.47050 * 299.99990 * 23 22 21 44 44 H 1.09001 * 109.47104 * 60.00106 * 23 22 21 45 45 H 1.09007 * 109.47244 * 59.99822 * 25 24 23 46 46 H 1.09003 * 109.47476 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.47494 * 299.99852 * 25 24 23 48 48 H 1.09000 * 109.47003 * 60.00287 * 26 24 23 49 49 H 1.09000 * 109.46679 * 179.97438 * 26 24 23 50 50 H 1.08999 * 109.47826 * 299.99875 * 26 24 23 51 51 H 1.07996 * 119.92905 * 179.97438 * 27 21 20 52 52 H 1.08004 * 120.07244 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4390 -2.2066 7 1 3.6466 -1.8449 -3.0510 8 6 5.5672 -1.5381 -2.1512 9 7 6.2218 -1.0438 -1.1218 10 14 6.4999 -2.3743 -3.5370 11 1 5.5395 -2.8417 -4.5686 12 1 7.4502 -1.4097 -4.1468 13 1 7.2517 -3.5358 -2.9974 14 7 2.0183 -0.6905 1.1962 15 6 1.6643 -2.0931 1.4281 16 6 2.7931 -0.0355 2.0834 17 8 3.1546 1.1016 1.8514 18 6 3.2032 -0.7000 3.3388 19 6 3.2058 0.0111 4.5398 20 6 3.5847 -0.6163 5.7086 21 6 3.9720 -1.9444 5.6901 22 6 4.3896 -2.6218 6.9699 23 6 5.8968 -2.4499 7.1696 24 7 6.3040 -3.1108 8.4168 25 6 7.7676 -3.1739 8.5255 26 6 5.7180 -2.4388 9.5842 27 6 3.9773 -2.6534 4.5021 28 6 3.5952 -2.0395 3.3272 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -1.7199 -1.2951 33 1 1.7516 -0.1585 -2.1370 34 1 3.9823 -0.4629 -0.4315 35 1 7.1885 -1.1135 -1.0830 36 1 2.4608 -2.7356 1.0528 37 1 1.5338 -2.2629 2.4969 38 1 0.7352 -2.3243 0.9072 39 1 2.9076 1.0491 4.5548 40 1 3.5827 -0.0684 6.6393 41 1 3.8584 -2.1726 7.8090 42 1 4.1493 -3.6835 6.9142 43 1 6.4281 -2.8992 6.3306 44 1 6.1372 -1.3882 7.2254 45 1 8.1767 -2.1636 8.5156 46 1 8.0418 -3.6674 9.4579 47 1 8.1706 -3.7372 7.6838 48 1 4.6308 -2.4678 9.5122 49 1 6.0352 -2.9486 10.4939 50 1 6.0528 -1.4019 9.6128 51 1 4.2811 -3.6897 4.4944 52 1 3.6001 -2.5940 2.4003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268085317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:02 Heat of formation + Delta-G solvation = 13.937430 kcal Electronic energy + Delta-G solvation = -29005.445604 eV Core-core repulsion = 25198.573910 eV Total energy + Delta-G solvation = -3806.871694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26134 -38.83437 -37.58875 -36.26836 -34.09498 -33.29324 -31.84514 -30.83409 -30.05570 -28.88541 -27.88248 -26.74134 -25.64295 -25.11679 -22.94924 -22.57402 -22.29272 -21.20728 -20.46398 -19.00274 -17.21454 -17.03230 -16.43483 -16.03761 -15.85753 -15.29893 -15.24582 -14.85445 -14.76489 -14.49622 -14.20864 -13.67711 -13.60122 -13.30925 -13.29117 -13.10829 -12.95394 -12.71610 -12.53187 -12.34608 -12.25308 -12.15695 -12.04053 -11.94675 -11.87646 -11.67986 -11.43389 -11.26739 -11.14763 -10.84227 -10.77716 -10.74265 -10.40579 -9.99004 -9.66840 -9.45886 -8.88756 -8.84411 -8.70592 -8.59538 -8.20334 -6.86122 -5.69462 -2.99189 1.05695 1.45374 3.08649 3.33754 3.45273 3.50547 3.53168 3.62937 3.89873 4.61443 4.65840 4.70554 4.82430 4.86067 4.93207 5.02904 5.05105 5.09029 5.23930 5.25913 5.32731 5.37136 5.38073 5.41941 5.48372 5.50820 5.57759 5.58469 5.60236 5.63408 5.74517 5.79414 5.81887 5.96169 5.96724 6.05479 6.10270 6.17413 6.21328 6.36610 6.40795 6.49067 6.52520 6.57121 6.69783 6.71341 6.76684 6.94917 7.04740 7.73573 7.76479 8.47573 8.57112 9.59137 10.18448 10.53911 11.52338 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.002969 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.570044 B = 9429.458541 C =11366.501741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.240 4.240 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.591 5.591 15 C 0.077 3.923 16 C 0.561 3.439 17 O -0.533 6.533 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.127 4.127 21 C -0.069 4.069 22 C -0.076 4.076 23 C 0.058 3.942 24 N -0.549 5.549 25 C 0.023 3.977 26 C 0.020 3.980 27 C -0.122 4.122 28 C -0.080 4.080 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.027 0.973 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.025 0.975 51 H 0.127 0.873 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -4.108 20.261 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.371 4.371 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.323 5.323 15 C -0.066 4.066 16 C 0.349 3.651 17 O -0.411 6.411 18 C -0.123 4.123 19 C -0.087 4.087 20 C -0.145 4.145 21 C -0.070 4.070 22 C -0.113 4.113 23 C -0.070 4.070 24 N -0.273 5.273 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.099 4.099 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.145 0.855 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.057 -4.071 19.954 21.901 hybrid contribution 1.198 0.413 -0.623 1.412 sum -6.859 -3.658 19.331 20.835 Atomic orbital electron populations 1.22067 0.95158 1.02066 1.02079 1.21411 0.93190 0.98570 0.84637 0.88179 1.21001 0.87179 0.96700 0.93546 1.42325 0.99681 1.70092 1.25185 1.19246 0.89420 1.29300 0.99174 0.91269 1.24754 0.96455 1.01716 0.98014 1.69711 1.07027 1.50695 1.30095 0.86156 0.79971 0.78750 0.81529 1.20638 1.21931 1.21951 1.47550 1.50384 1.12190 1.22207 1.21996 1.01255 0.82206 1.01161 1.18290 0.77950 0.85679 0.83181 1.90778 1.54327 1.18659 1.77296 1.19933 1.03870 0.94632 0.93815 1.21114 0.97008 0.99468 0.91099 1.20891 1.01322 0.94365 0.97939 1.19933 0.97996 0.94057 0.94995 1.20596 0.95140 1.01301 0.94311 1.22162 0.95667 0.97103 0.92086 1.61997 1.09558 1.53213 1.02493 1.22388 0.87136 1.00202 1.02764 1.22454 1.00645 0.96521 0.93253 1.20993 1.00906 1.00308 0.91770 1.21708 0.95530 0.93509 0.99130 0.92324 0.91327 0.92645 0.96210 0.95486 0.77861 0.93649 0.91608 0.91367 0.91173 0.85453 0.85977 0.90988 0.89972 0.90240 0.94414 0.95584 0.91386 0.91128 0.91034 0.91509 0.95615 0.85521 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.18 37.15 0.34 -1.67 16 2 C 0.13 2.20 2.79 -67.93 -0.19 2.01 16 3 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 4 C 0.14 2.96 5.56 -4.04 -0.02 2.94 16 5 N -0.73 -19.13 5.43 -59.91 -0.33 -19.45 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 10 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 N -0.59 -10.18 2.24 -175.05 -0.39 -10.58 16 15 C 0.08 1.07 8.05 59.85 0.48 1.55 16 16 C 0.56 10.79 7.03 -12.33 -0.09 10.70 16 17 O -0.53 -12.28 16.28 5.32 0.09 -12.20 16 18 C -0.12 -1.94 5.16 -104.97 -0.54 -2.48 16 19 C -0.07 -0.96 9.65 -39.19 -0.38 -1.34 16 20 C -0.13 -1.48 9.68 -39.64 -0.38 -1.86 16 21 C -0.07 -0.77 5.14 -104.54 -0.54 -1.31 16 22 C -0.08 -0.68 5.26 -27.88 -0.15 -0.82 16 23 C 0.06 0.54 4.94 -3.82 -0.02 0.53 16 24 N -0.55 -4.87 5.02 -251.26 -1.26 -6.14 16 25 C 0.02 0.18 9.57 60.06 0.57 0.76 16 26 C 0.02 0.14 9.32 60.06 0.56 0.70 16 27 C -0.12 -1.49 9.68 -39.64 -0.38 -1.87 16 28 C -0.08 -1.18 7.62 -39.18 -0.30 -1.48 16 29 H 0.06 0.68 6.66 -51.93 -0.35 0.34 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 11.12 7.06 -40.82 -0.29 10.83 16 35 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 37 H 0.07 0.81 5.99 -51.93 -0.31 0.50 16 38 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 39 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.07 0.57 6.49 -51.93 -0.34 0.23 16 42 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 43 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 44 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 45 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 47 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 48 H 0.07 0.47 6.47 -51.93 -0.34 0.14 16 49 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 50 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 51 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 52 H 0.14 2.12 5.52 -52.48 -0.29 1.83 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -34.63 412.92 -10.06 -44.69 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.82 Total: 9.08 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.28 Total: -1.15 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.25 Total: -64.46 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.63 -10.06 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268085317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.630 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds