Wall clock time and date at job start Tue Mar 31 2020 17:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47519 * 2 1 4 4 C 1.53004 * 109.47399 * 239.99665 * 2 1 3 5 5 N 1.46501 * 109.47175 * 185.00122 * 4 2 1 6 6 C 1.36938 * 119.99696 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99810 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00146 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00035 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47028 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47142 * 120.00233 * 10 8 6 13 13 H 1.48500 * 109.47277 * 240.00282 * 10 8 6 14 14 N 1.46501 * 109.47345 * 119.99587 * 2 1 3 15 15 C 1.46502 * 119.99828 * 59.99808 * 14 2 1 16 16 C 1.34779 * 120.00518 * 240.00370 * 14 2 1 17 17 O 1.21552 * 119.99690 * 355.47701 * 16 14 2 18 18 C 1.47845 * 120.00198 * 175.47502 * 16 14 2 19 19 C 1.39568 * 120.14348 * 221.14142 * 18 16 14 20 20 C 1.37960 * 119.85159 * 179.74894 * 19 18 16 21 21 C 1.38353 * 120.14465 * 0.53194 * 20 19 18 22 22 C 1.50699 * 119.85412 * 179.76702 * 21 20 19 23 23 C 1.53004 * 109.47133 * 269.97965 * 22 21 20 24 24 N 1.46902 * 109.47261 * 180.02562 * 23 22 21 25 25 C 1.46897 * 110.99847 * 169.99941 * 24 23 22 26 26 C 1.46895 * 110.99750 * 293.95049 * 24 23 22 27 27 C 1.38356 * 120.29323 * 359.74599 * 21 20 19 28 28 C 1.37962 * 120.14418 * 359.97438 * 27 21 20 29 29 H 1.09004 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47332 * 60.00460 * 1 2 3 31 31 H 1.08995 * 109.47558 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.46965 * 305.00038 * 4 2 1 33 33 H 1.08999 * 109.47006 * 64.99571 * 4 2 1 34 34 H 0.96999 * 120.00284 * 0.02562 * 5 4 2 35 35 H 0.96998 * 119.99822 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47071 * 95.17405 * 15 14 2 37 37 H 1.09002 * 109.47142 * 215.17182 * 15 14 2 38 38 H 1.08997 * 109.47084 * 335.17897 * 15 14 2 39 39 H 1.08002 * 120.07567 * 0.02562 * 19 18 16 40 40 H 1.08000 * 119.92720 * 180.28037 * 20 19 18 41 41 H 1.09002 * 109.47602 * 29.97742 * 22 21 20 42 42 H 1.09002 * 109.47563 * 149.98066 * 22 21 20 43 43 H 1.08998 * 109.47050 * 299.99990 * 23 22 21 44 44 H 1.09001 * 109.47104 * 60.00106 * 23 22 21 45 45 H 1.09007 * 109.47244 * 59.99822 * 25 24 23 46 46 H 1.09003 * 109.47476 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.47494 * 299.99852 * 25 24 23 48 48 H 1.09000 * 109.47003 * 60.00287 * 26 24 23 49 49 H 1.09000 * 109.46679 * 179.97438 * 26 24 23 50 50 H 1.08999 * 109.47826 * 299.99875 * 26 24 23 51 51 H 1.07996 * 119.92905 * 179.97438 * 27 21 20 52 52 H 1.08004 * 120.07244 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4390 -2.2066 7 1 3.6466 -1.8449 -3.0510 8 6 5.5672 -1.5381 -2.1512 9 7 6.2218 -1.0438 -1.1218 10 14 6.4999 -2.3743 -3.5370 11 1 5.5395 -2.8417 -4.5686 12 1 7.4502 -1.4097 -4.1468 13 1 7.2517 -3.5358 -2.9974 14 7 2.0183 -0.6905 1.1962 15 6 1.6643 -2.0931 1.4281 16 6 2.7931 -0.0355 2.0834 17 8 3.1546 1.1016 1.8514 18 6 3.2032 -0.7000 3.3388 19 6 3.2058 0.0111 4.5398 20 6 3.5847 -0.6163 5.7086 21 6 3.9720 -1.9444 5.6901 22 6 4.3896 -2.6218 6.9699 23 6 5.8968 -2.4499 7.1696 24 7 6.3040 -3.1108 8.4168 25 6 7.7676 -3.1739 8.5255 26 6 5.7180 -2.4388 9.5842 27 6 3.9773 -2.6534 4.5021 28 6 3.5952 -2.0395 3.3272 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -1.7199 -1.2951 33 1 1.7516 -0.1585 -2.1370 34 1 3.9823 -0.4629 -0.4315 35 1 7.1885 -1.1135 -1.0830 36 1 2.4608 -2.7356 1.0528 37 1 1.5338 -2.2629 2.4969 38 1 0.7352 -2.3243 0.9072 39 1 2.9076 1.0491 4.5548 40 1 3.5827 -0.0684 6.6393 41 1 3.8584 -2.1726 7.8090 42 1 4.1493 -3.6835 6.9142 43 1 6.4281 -2.8992 6.3306 44 1 6.1372 -1.3882 7.2254 45 1 8.1767 -2.1636 8.5156 46 1 8.0418 -3.6674 9.4579 47 1 8.1706 -3.7372 7.6838 48 1 4.6308 -2.4678 9.5122 49 1 6.0352 -2.9486 10.4939 50 1 6.0528 -1.4019 9.6128 51 1 4.2811 -3.6897 4.4944 52 1 3.6001 -2.5940 2.4003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268085317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:01 Heat of formation + Delta-G solvation = -8.454530 kcal Electronic energy + Delta-G solvation = -29006.416592 eV Core-core repulsion = 25198.573910 eV Total energy + Delta-G solvation = -3807.842682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54300 -39.92489 -38.36995 -37.81338 -35.91075 -34.46591 -33.32263 -32.10919 -31.63176 -29.82910 -28.45217 -27.97876 -27.39900 -26.04929 -24.56062 -23.72377 -23.52377 -22.17030 -21.49645 -20.41383 -19.12559 -18.49838 -17.67689 -17.02644 -16.84394 -16.67559 -16.35712 -16.03506 -15.82363 -15.52658 -15.47607 -15.29992 -15.12740 -14.63704 -14.44496 -14.07716 -14.07144 -13.84169 -13.80056 -13.70935 -13.33600 -13.24680 -13.01389 -12.99602 -12.84150 -12.80746 -12.67842 -12.53414 -12.43654 -12.16701 -12.10532 -12.07418 -11.81047 -11.73614 -11.60815 -11.02994 -10.86120 -9.92961 -9.73691 -9.56711 -9.32698 -9.01285 -7.93908 -5.24665 -0.04803 0.41794 1.44073 1.46068 1.56036 1.74045 2.02374 2.54322 2.71874 3.04246 3.38554 3.49684 3.80855 3.86748 3.96075 4.01855 4.07333 4.11202 4.23256 4.26105 4.29951 4.32440 4.42871 4.45694 4.50872 4.51332 4.61852 4.65137 4.72129 4.75013 4.77829 4.81012 4.84405 4.89731 4.95742 4.98850 5.01240 5.04765 5.10829 5.12956 5.20342 5.28425 5.35794 5.41247 5.47146 5.61060 5.65059 5.94694 6.04171 6.10214 6.24977 6.39005 7.13926 7.31359 8.07809 8.31244 9.29111 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.002969 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.570044 B = 9429.458541 C =11366.501741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.066 0.934 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.078 4.078 9 N -0.969 5.969 10 Si 0.976 3.024 11 H -0.262 1.262 12 H -0.298 1.298 13 H -0.292 1.292 14 N -0.589 5.589 15 C 0.077 3.923 16 C 0.550 3.450 17 O -0.588 6.588 18 C -0.145 4.145 19 C -0.078 4.078 20 C -0.119 4.119 21 C -0.057 4.057 22 C -0.067 4.067 23 C 0.059 3.941 24 N -0.558 5.558 25 C 0.022 3.978 26 C 0.018 3.982 27 C -0.120 4.120 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.023 0.977 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.024 0.976 51 H 0.148 0.852 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 -6.008 21.555 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.084 0.916 4 C 0.015 3.985 5 N -0.386 5.386 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.620 5.620 10 Si 0.805 3.195 11 H -0.187 1.187 12 H -0.225 1.225 13 H -0.219 1.219 14 N -0.320 5.320 15 C -0.065 4.065 16 C 0.340 3.660 17 O -0.470 6.470 18 C -0.148 4.148 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.058 4.058 22 C -0.105 4.105 23 C -0.069 4.069 24 N -0.281 5.281 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.109 4.109 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.170 0.830 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.043 0.957 51 H 0.165 0.835 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.536 -6.015 21.226 24.035 hybrid contribution 1.602 0.992 -0.968 2.118 sum -7.934 -5.024 20.258 22.328 Atomic orbital electron populations 1.21978 0.90929 1.03823 1.03263 1.21349 0.96252 0.96359 0.83721 0.91571 1.21219 0.84164 0.97905 0.95198 1.42556 1.02035 1.69807 1.24162 1.19694 0.89935 1.28184 0.99570 0.90240 1.25632 0.97571 1.03190 1.00638 1.69907 1.06789 1.52862 1.32461 0.85037 0.78450 0.77269 0.78753 1.18665 1.22530 1.21869 1.47690 1.49509 1.13342 1.21458 1.22141 1.01559 0.79814 1.02939 1.18917 0.77424 0.85282 0.84383 1.90726 1.56551 1.21065 1.78657 1.19845 1.06328 0.95498 0.93148 1.21221 0.97582 0.99463 0.91415 1.21193 0.99757 0.94665 0.98033 1.20216 0.96168 0.93789 0.95604 1.20577 0.94793 1.01675 0.93431 1.22090 0.95864 0.96618 0.92292 1.62021 1.10072 1.53371 1.02682 1.22427 0.86760 1.00151 1.03315 1.22524 1.01106 0.96451 0.92948 1.21233 0.99995 1.01301 0.91218 1.21633 0.96597 0.92942 0.99709 0.90173 0.89838 0.91831 0.94348 0.95101 0.79805 0.94312 0.93475 0.89288 0.88577 0.85803 0.83024 0.89148 0.89127 0.91412 0.95128 0.95859 0.90116 0.91490 0.90162 0.90538 0.95720 0.83474 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.18 71.98 0.66 -2.76 16 2 C 0.13 4.51 2.79 44.99 0.13 4.64 16 3 H 0.07 2.81 6.91 -2.39 -0.02 2.80 16 4 C 0.14 5.83 5.56 86.38 0.48 6.31 16 5 N -0.74 -40.03 5.43 -343.44 -1.87 -41.89 16 6 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 8 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 9 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 10 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 N -0.59 -20.81 2.24 -826.01 -1.85 -22.66 16 15 C 0.08 2.10 8.05 127.77 1.03 3.13 16 16 C 0.55 22.35 7.03 86.79 0.61 22.96 16 17 O -0.59 -29.17 16.28 -3.88 -0.06 -29.23 16 18 C -0.15 -4.87 5.16 -20.09 -0.10 -4.98 16 19 C -0.08 -2.22 9.65 22.52 0.22 -2.01 16 20 C -0.12 -2.56 9.68 22.23 0.22 -2.34 16 21 C -0.06 -1.15 5.14 -19.81 -0.10 -1.25 16 22 C -0.07 -1.00 5.26 29.85 0.16 -0.85 16 23 C 0.06 1.01 4.94 86.30 0.43 1.44 16 24 N -0.56 -8.74 5.02 -948.84 -4.76 -13.50 16 25 C 0.02 0.31 9.57 127.69 1.22 1.53 16 26 C 0.02 0.21 9.32 127.69 1.19 1.40 16 27 C -0.12 -2.78 9.68 22.23 0.22 -2.56 16 28 C -0.09 -2.68 7.62 22.53 0.17 -2.51 16 29 H 0.08 1.60 6.66 -2.39 -0.02 1.59 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.45 7.84 -2.39 -0.02 1.44 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.37 22.32 7.06 -92.71 -0.65 21.66 16 35 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.05 1.47 6.85 -2.39 -0.02 1.46 16 37 H 0.09 2.05 5.99 -2.39 -0.01 2.04 16 38 H 0.10 2.07 6.44 -2.39 -0.02 2.06 16 39 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.09 1.07 6.49 -2.39 -0.02 1.05 16 42 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 43 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 44 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 45 H 0.02 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 47 H 0.07 0.98 8.12 -2.39 -0.02 0.97 16 48 H 0.08 0.81 6.47 -2.39 -0.02 0.79 16 49 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 50 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 52 H 0.13 4.02 5.52 -2.91 -0.02 4.00 16 Total: -1.00 -78.33 412.92 1.83 -76.49 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.24 Total: 38.84 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 7.82 Total: 4.83 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -8.20 Total: -140.52 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -78.33 1.83 -76.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268085317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.040 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds