Wall clock time and date at job start Tue Mar 31 2020 18:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47204 * 2 1 4 4 C 1.46896 * 111.00217 * 158.65725 * 3 2 1 5 5 C 1.46903 * 110.99500 * 282.61086 * 3 2 1 6 6 H 1.09000 * 109.46786 * 312.21709 * 5 3 2 7 7 C 1.50699 * 109.47550 * 72.22372 * 5 3 2 8 8 O 1.21281 * 119.99761 * 33.77350 * 7 5 3 9 9 N 1.34771 * 120.00022 * 213.77806 * 7 5 3 10 10 C 1.46504 * 119.99884 * 5.76832 * 9 7 5 11 11 C 1.46496 * 119.99942 * 185.76716 * 9 7 5 12 12 C 1.53003 * 109.46634 * 90.00166 * 11 9 7 13 13 N 1.46505 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.46504 * 120.00027 * 89.99770 * 13 12 11 15 15 C 1.36932 * 120.00014 * 270.00107 * 13 12 11 16 16 H 1.08004 * 120.00309 * 138.37028 * 15 13 12 17 17 C 1.38814 * 120.00126 * 318.36677 * 15 13 12 18 18 N 1.31618 * 119.99777 * 168.24869 * 17 15 13 19 19 Si 1.86797 * 119.99847 * 348.24645 * 17 15 13 20 20 H 1.48501 * 109.47143 * 92.60905 * 19 17 15 21 21 H 1.48500 * 109.47421 * 212.60911 * 19 17 15 22 22 H 1.48499 * 109.47253 * 332.61245 * 19 17 15 23 23 C 1.50700 * 109.46570 * 192.22300 * 5 3 2 24 24 C 1.38241 * 120.00233 * 132.30717 * 23 5 3 25 25 C 1.38232 * 120.00452 * 179.80580 * 24 23 5 26 26 C 1.38240 * 119.99461 * 0.39884 * 25 24 23 27 27 C 1.38234 * 120.00167 * 359.85340 * 26 25 24 28 28 C 1.38229 * 120.00151 * 359.96095 * 27 26 25 29 29 H 1.08999 * 109.47234 * 69.46970 * 1 2 3 30 30 H 1.09002 * 109.47059 * 189.46934 * 1 2 3 31 31 H 1.08996 * 109.47699 * 309.46581 * 1 2 3 32 32 H 1.09004 * 109.47532 * 239.99394 * 2 1 3 33 33 H 1.09007 * 109.46886 * 119.99368 * 2 1 3 34 34 H 1.08996 * 109.47239 * 180.02562 * 4 3 2 35 35 H 1.09004 * 109.46897 * 299.99791 * 4 3 2 36 36 H 1.08996 * 109.47669 * 59.99449 * 4 3 2 37 37 H 1.09000 * 109.46701 * 90.74857 * 10 9 7 38 38 H 1.09003 * 109.46872 * 210.74008 * 10 9 7 39 39 H 1.08996 * 109.47445 * 330.74399 * 10 9 7 40 40 H 1.08995 * 109.47435 * 209.99715 * 11 9 7 41 41 H 1.08995 * 109.47707 * 330.00333 * 11 9 7 42 42 H 1.09001 * 109.47234 * 299.99820 * 12 11 9 43 43 H 1.09000 * 109.47552 * 60.00042 * 12 11 9 44 44 H 1.08999 * 109.46783 * 95.03447 * 14 13 12 45 45 H 1.08993 * 109.47205 * 215.03341 * 14 13 12 46 46 H 1.09003 * 109.46898 * 335.03798 * 14 13 12 47 47 H 0.97004 * 119.99423 * 180.02562 * 18 17 15 48 48 H 1.08001 * 119.99377 * 359.97438 * 24 23 5 49 49 H 1.07999 * 120.00070 * 180.22804 * 25 24 23 50 50 H 1.08002 * 119.99794 * 179.83263 * 26 25 24 51 51 H 1.07999 * 119.99647 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.00195 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3994 1.4556 0.4991 5 6 1.9128 1.9810 -1.3384 6 1 2.3208 1.2910 -2.0770 7 6 0.4644 2.2545 -1.6525 8 8 -0.2976 2.5778 -0.7661 9 7 0.0161 2.1398 -2.9182 10 6 0.9031 1.6282 -3.9660 11 6 -1.3582 2.5267 -3.2463 12 6 -1.3917 4.0049 -3.6399 13 7 -2.7660 4.3917 -3.9687 14 6 -3.6535 4.9032 -2.9213 15 6 -3.2210 4.2751 -5.2549 16 1 -4.2152 3.8980 -5.4440 17 6 -2.4044 4.6417 -6.3160 18 7 -2.7406 4.3194 -7.5470 19 14 -0.8286 5.5925 -5.9965 20 1 0.3025 4.6414 -5.8507 21 1 -0.5625 6.5070 -7.1359 22 1 -0.9728 6.3850 -4.7490 23 6 2.6876 3.2730 -1.3761 24 6 3.5583 3.5267 -2.4194 25 6 4.2661 4.7135 -2.4561 26 6 4.1092 5.6432 -1.4452 27 6 3.2424 5.3874 -0.3992 28 6 2.5319 4.2022 -0.3645 29 1 -0.3634 0.3604 -0.9624 30 1 -0.3633 -1.0137 0.1691 31 1 -0.3634 0.6532 0.7933 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.7369 2.4919 0.4889 35 1 3.4370 1.0716 1.5186 36 1 4.0479 0.8556 -0.1392 37 1 0.7963 0.5457 -4.0358 38 1 0.6370 2.0819 -4.9207 39 1 1.9358 1.8764 -3.7210 40 1 -1.7174 1.9210 -4.0783 41 1 -1.9978 2.3673 -2.3782 42 1 -1.0325 4.6106 -2.8080 43 1 -0.7522 4.1643 -4.5081 44 1 -3.6239 5.9928 -2.9202 45 1 -4.6726 4.5676 -3.1127 46 1 -3.3240 4.5298 -1.9516 47 1 -2.1698 4.5753 -8.2884 48 1 3.6836 2.7986 -3.2073 49 1 4.9436 4.9132 -3.2731 50 1 4.6642 6.5694 -1.4724 51 1 3.1203 6.1136 0.3908 52 1 1.8543 4.0025 0.4525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268254668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:59 Heat of formation + Delta-G solvation = 46.962924 kcal Electronic energy + Delta-G solvation = -31041.875515 eV Core-core repulsion = 27236.435914 eV Total energy + Delta-G solvation = -3805.439601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.74441 -38.86757 -37.24112 -36.09025 -34.87642 -32.57683 -31.65089 -31.09199 -30.27183 -29.40680 -27.68555 -26.55449 -25.88171 -24.58568 -23.40739 -22.78474 -21.94225 -21.17083 -20.62840 -18.84724 -17.24737 -17.15772 -16.69510 -16.31788 -15.96249 -15.50203 -15.11108 -14.93052 -14.68258 -14.31079 -14.18946 -13.76945 -13.50214 -13.39235 -13.25138 -13.05889 -12.94015 -12.76354 -12.69597 -12.57448 -12.53198 -12.21722 -12.04458 -11.69124 -11.62580 -11.57045 -11.48266 -11.13353 -11.10762 -10.97817 -10.73310 -10.58550 -10.48754 -9.80390 -9.66708 -9.47241 -8.99211 -8.72617 -8.60628 -8.47033 -8.36142 -6.73544 -5.98965 -3.50495 1.15805 1.32302 2.83894 3.09955 3.24533 3.42917 3.50758 3.61112 3.89840 4.48323 4.48670 4.66481 4.75729 4.83874 4.92136 4.98482 5.07218 5.10252 5.16000 5.23447 5.26771 5.35708 5.39000 5.42778 5.46128 5.50324 5.53166 5.73669 5.75055 5.79022 5.81347 5.86071 5.95823 6.00790 6.10345 6.28240 6.32125 6.37877 6.40973 6.42853 6.44351 6.47206 6.58705 6.73130 6.79687 6.80114 6.86358 6.90992 6.97582 7.68743 8.08234 8.38874 8.47730 8.97487 9.68355 10.12224 11.15922 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.004632 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.225221 B = 6043.049385 C = 7214.616005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.518 5.518 4 C 0.021 3.979 5 C 0.107 3.893 6 H 0.067 0.933 7 C 0.525 3.475 8 O -0.514 6.514 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.098 3.902 12 C 0.129 3.871 13 N -0.613 5.613 14 C 0.126 3.874 15 C -0.268 4.268 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 0.894 3.106 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.272 1.272 23 C -0.083 4.083 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.082 4.082 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.049 0.951 44 H 0.009 0.991 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.263 0.737 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.897 -6.326 13.928 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.242 5.242 4 C -0.127 4.127 5 C -0.004 4.004 6 H 0.085 0.915 7 C 0.311 3.689 8 O -0.388 6.388 9 N -0.348 5.348 10 C -0.072 4.072 11 C -0.026 4.026 12 C 0.003 3.997 13 N -0.337 5.337 14 C -0.019 4.019 15 C -0.397 4.397 16 H 0.098 0.902 17 C -0.166 4.166 18 N -0.550 5.550 19 Si 0.726 3.274 20 H -0.215 1.215 21 H -0.232 1.232 22 H -0.197 1.197 23 C -0.084 4.084 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.143 4.143 28 C -0.101 4.101 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.161 -5.863 14.554 22.526 hybrid contribution 1.528 0.010 -0.831 1.740 sum 17.690 -5.853 13.723 23.141 Atomic orbital electron populations 1.21946 0.94018 1.00953 1.03677 1.22182 0.97116 0.87606 1.00644 1.61762 1.21807 1.18699 1.21962 1.22524 0.87609 1.02787 0.99742 1.20637 0.93704 0.94454 0.91638 0.91549 1.19965 0.88791 0.77800 0.82333 1.90675 1.56702 1.46177 1.45249 1.47993 1.14440 1.64510 1.07823 1.21907 0.93827 0.98984 0.92481 1.22377 0.80065 0.98837 1.01305 1.21466 0.87895 0.92500 0.97868 1.43983 1.09411 1.73836 1.06501 1.21089 0.94298 0.96008 0.90508 1.18862 1.02290 1.38229 0.80289 0.90223 1.25547 0.98665 0.97331 0.95046 1.69783 1.38942 1.47768 0.98498 0.86697 0.83424 0.80361 0.76886 1.21503 1.23209 1.19665 1.19361 0.97597 0.95267 0.96190 1.21032 0.96515 0.97872 0.97568 1.21075 1.00081 0.93979 0.98863 1.21201 0.98561 0.99128 0.94445 1.21200 0.97053 0.97154 0.98842 1.21148 0.97955 0.92558 0.98402 0.92482 0.93077 0.90805 0.94840 0.90642 0.90393 0.91101 0.95778 0.92614 0.90241 0.91745 0.90006 0.90338 0.94118 0.93348 0.97252 0.94186 0.94723 0.92712 0.86152 0.85907 0.86082 0.85885 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.54 37.15 0.32 -1.58 16 2 C 0.05 0.57 5.72 -3.83 -0.02 0.55 16 3 N -0.52 -6.29 4.03 -237.69 -0.96 -7.25 16 4 C 0.02 0.21 8.92 60.06 0.54 0.74 16 5 C 0.11 1.41 1.46 -70.02 -0.10 1.31 16 6 H 0.07 0.78 5.59 -51.93 -0.29 0.49 16 7 C 0.53 8.66 4.14 -10.99 -0.05 8.61 16 8 O -0.51 -9.92 14.22 5.56 0.08 -9.84 16 9 N -0.61 -10.32 2.87 -181.58 -0.52 -10.84 16 10 C 0.07 0.98 10.01 59.85 0.60 1.58 16 11 C 0.10 1.94 5.78 -4.04 -0.02 1.92 16 12 C 0.13 2.96 4.63 -4.04 -0.02 2.94 16 13 N -0.61 -15.26 2.47 -181.11 -0.45 -15.71 16 14 C 0.13 2.73 10.70 59.85 0.64 3.37 16 15 C -0.27 -7.59 9.99 -15.06 -0.15 -7.74 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 17 C 0.03 0.99 5.43 -17.43 -0.09 0.90 16 18 N -0.91 -27.59 13.97 55.49 0.78 -26.82 16 19 Si 0.89 22.96 24.68 -169.99 -4.19 18.77 16 20 H -0.29 -6.95 6.74 56.52 0.38 -6.57 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.27 -7.08 6.99 56.52 0.40 -6.68 16 23 C -0.08 -1.08 3.49 -104.62 -0.36 -1.45 16 24 C -0.11 -1.31 9.20 -39.58 -0.36 -1.67 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 28 C -0.08 -1.08 7.52 -39.58 -0.30 -1.38 16 29 H 0.06 0.86 5.49 -51.93 -0.28 0.57 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 32 H 0.03 0.34 7.75 -51.93 -0.40 -0.06 16 33 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.08 0.80 5.33 -51.93 -0.28 0.52 16 35 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.06 0.74 4.51 -51.93 -0.23 0.51 16 40 H 0.08 1.67 8.07 -51.93 -0.42 1.25 16 41 H 0.08 1.60 7.35 -51.93 -0.38 1.22 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.18 2.93 -51.93 -0.15 1.03 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 46 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.12 1.20 6.89 -52.49 -0.36 0.83 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 50 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 52 H 0.14 1.91 7.95 -52.48 -0.42 1.49 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -32.88 399.68 -8.50 -41.38 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.67 Total: 1.40 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.58 Total: 2.88 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -1.15 Total: -60.61 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.19 Total: 18.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.88 -8.50 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.338 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds