Wall clock time and date at job start Tue Mar 31 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47204 * 2 1 4 4 C 1.46896 * 111.00217 * 158.65725 * 3 2 1 5 5 C 1.46903 * 110.99500 * 282.61086 * 3 2 1 6 6 H 1.09000 * 109.46786 * 312.21709 * 5 3 2 7 7 C 1.50699 * 109.47550 * 72.22372 * 5 3 2 8 8 O 1.21281 * 119.99761 * 33.77350 * 7 5 3 9 9 N 1.34771 * 120.00022 * 213.77806 * 7 5 3 10 10 C 1.46504 * 119.99884 * 5.76832 * 9 7 5 11 11 C 1.46496 * 119.99942 * 185.76716 * 9 7 5 12 12 C 1.53003 * 109.46634 * 90.00166 * 11 9 7 13 13 N 1.46505 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.46504 * 120.00027 * 89.99770 * 13 12 11 15 15 C 1.36932 * 120.00014 * 270.00107 * 13 12 11 16 16 H 1.08004 * 120.00309 * 138.37028 * 15 13 12 17 17 C 1.38814 * 120.00126 * 318.36677 * 15 13 12 18 18 N 1.31618 * 119.99777 * 168.24869 * 17 15 13 19 19 Si 1.86797 * 119.99847 * 348.24645 * 17 15 13 20 20 H 1.48501 * 109.47143 * 92.60905 * 19 17 15 21 21 H 1.48500 * 109.47421 * 212.60911 * 19 17 15 22 22 H 1.48499 * 109.47253 * 332.61245 * 19 17 15 23 23 C 1.50700 * 109.46570 * 192.22300 * 5 3 2 24 24 C 1.38241 * 120.00233 * 132.30717 * 23 5 3 25 25 C 1.38232 * 120.00452 * 179.80580 * 24 23 5 26 26 C 1.38240 * 119.99461 * 0.39884 * 25 24 23 27 27 C 1.38234 * 120.00167 * 359.85340 * 26 25 24 28 28 C 1.38229 * 120.00151 * 359.96095 * 27 26 25 29 29 H 1.08999 * 109.47234 * 69.46970 * 1 2 3 30 30 H 1.09002 * 109.47059 * 189.46934 * 1 2 3 31 31 H 1.08996 * 109.47699 * 309.46581 * 1 2 3 32 32 H 1.09004 * 109.47532 * 239.99394 * 2 1 3 33 33 H 1.09007 * 109.46886 * 119.99368 * 2 1 3 34 34 H 1.08996 * 109.47239 * 180.02562 * 4 3 2 35 35 H 1.09004 * 109.46897 * 299.99791 * 4 3 2 36 36 H 1.08996 * 109.47669 * 59.99449 * 4 3 2 37 37 H 1.09000 * 109.46701 * 90.74857 * 10 9 7 38 38 H 1.09003 * 109.46872 * 210.74008 * 10 9 7 39 39 H 1.08996 * 109.47445 * 330.74399 * 10 9 7 40 40 H 1.08995 * 109.47435 * 209.99715 * 11 9 7 41 41 H 1.08995 * 109.47707 * 330.00333 * 11 9 7 42 42 H 1.09001 * 109.47234 * 299.99820 * 12 11 9 43 43 H 1.09000 * 109.47552 * 60.00042 * 12 11 9 44 44 H 1.08999 * 109.46783 * 95.03447 * 14 13 12 45 45 H 1.08993 * 109.47205 * 215.03341 * 14 13 12 46 46 H 1.09003 * 109.46898 * 335.03798 * 14 13 12 47 47 H 0.97004 * 119.99423 * 180.02562 * 18 17 15 48 48 H 1.08001 * 119.99377 * 359.97438 * 24 23 5 49 49 H 1.07999 * 120.00070 * 180.22804 * 25 24 23 50 50 H 1.08002 * 119.99794 * 179.83263 * 26 25 24 51 51 H 1.07999 * 119.99647 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.00195 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3994 1.4556 0.4991 5 6 1.9128 1.9810 -1.3384 6 1 2.3208 1.2910 -2.0770 7 6 0.4644 2.2545 -1.6525 8 8 -0.2976 2.5778 -0.7661 9 7 0.0161 2.1398 -2.9182 10 6 0.9031 1.6282 -3.9660 11 6 -1.3582 2.5267 -3.2463 12 6 -1.3917 4.0049 -3.6399 13 7 -2.7660 4.3917 -3.9687 14 6 -3.6535 4.9032 -2.9213 15 6 -3.2210 4.2751 -5.2549 16 1 -4.2152 3.8980 -5.4440 17 6 -2.4044 4.6417 -6.3160 18 7 -2.7406 4.3194 -7.5470 19 14 -0.8286 5.5925 -5.9965 20 1 0.3025 4.6414 -5.8507 21 1 -0.5625 6.5070 -7.1359 22 1 -0.9728 6.3850 -4.7490 23 6 2.6876 3.2730 -1.3761 24 6 3.5583 3.5267 -2.4194 25 6 4.2661 4.7135 -2.4561 26 6 4.1092 5.6432 -1.4452 27 6 3.2424 5.3874 -0.3992 28 6 2.5319 4.2022 -0.3645 29 1 -0.3634 0.3604 -0.9624 30 1 -0.3633 -1.0137 0.1691 31 1 -0.3634 0.6532 0.7933 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.7369 2.4919 0.4889 35 1 3.4370 1.0716 1.5186 36 1 4.0479 0.8556 -0.1392 37 1 0.7963 0.5457 -4.0358 38 1 0.6370 2.0819 -4.9207 39 1 1.9358 1.8764 -3.7210 40 1 -1.7174 1.9210 -4.0783 41 1 -1.9978 2.3673 -2.3782 42 1 -1.0325 4.6106 -2.8080 43 1 -0.7522 4.1643 -4.5081 44 1 -3.6239 5.9928 -2.9202 45 1 -4.6726 4.5676 -3.1127 46 1 -3.3240 4.5298 -1.9516 47 1 -2.1698 4.5753 -8.2884 48 1 3.6836 2.7986 -3.2073 49 1 4.9436 4.9132 -3.2731 50 1 4.6642 6.5694 -1.4724 51 1 3.1203 6.1136 0.3908 52 1 1.8543 4.0025 0.4525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268254668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:58 Heat of formation + Delta-G solvation = 26.728353 kcal Electronic energy + Delta-G solvation = -31042.752952 eV Core-core repulsion = 27236.435914 eV Total energy + Delta-G solvation = -3806.317038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83204 -39.92959 -38.40876 -37.67363 -36.36280 -33.87363 -33.45251 -31.97551 -31.29274 -30.79329 -28.73450 -28.21065 -27.48158 -25.61274 -24.88960 -23.65618 -22.91896 -22.81024 -21.93882 -20.02449 -18.88004 -18.40217 -18.06646 -17.57925 -17.22795 -16.89717 -16.41377 -16.07551 -15.80669 -15.46069 -15.44262 -15.08786 -14.94561 -14.73329 -14.43034 -14.37561 -14.26350 -14.09284 -13.96940 -13.68617 -13.57213 -13.49506 -13.36078 -13.24335 -12.96953 -12.85620 -12.58845 -12.54180 -12.41923 -12.38154 -12.03582 -11.94781 -11.87853 -11.68083 -11.45931 -10.90313 -10.73691 -9.85940 -9.79468 -9.63949 -9.32633 -8.76132 -8.22582 -5.73407 0.28171 0.46075 1.20377 1.34664 1.45985 1.61875 1.87110 2.34346 2.73366 2.93151 3.07847 3.37414 3.50679 3.67415 3.80367 3.99778 4.02460 4.09910 4.14199 4.17965 4.25994 4.27518 4.30077 4.45803 4.47236 4.56122 4.58840 4.59267 4.64518 4.65629 4.67321 4.75452 4.78903 4.86811 4.88021 4.99150 4.99976 5.02015 5.03093 5.05662 5.12646 5.36306 5.45741 5.49654 5.55720 5.58803 5.89525 5.92189 6.03543 6.07477 6.12589 6.43115 6.89688 7.20667 7.52027 7.98379 8.95683 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.004632 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.225221 B = 6043.049385 C = 7214.616005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.536 5.536 4 C 0.026 3.974 5 C 0.117 3.883 6 H 0.085 0.915 7 C 0.524 3.476 8 O -0.549 6.549 9 N -0.618 5.618 10 C 0.067 3.933 11 C 0.115 3.885 12 C 0.135 3.865 13 N -0.626 5.626 14 C 0.126 3.874 15 C -0.264 4.264 16 H 0.047 0.953 17 C -0.011 4.011 18 N -0.948 5.948 19 Si 0.951 3.049 20 H -0.263 1.263 21 H -0.305 1.305 22 H -0.277 1.277 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.132 4.132 28 C -0.098 4.098 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.266 0.734 48 H 0.140 0.860 49 H 0.147 0.853 50 H 0.145 0.855 51 H 0.137 0.863 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.102 -6.677 14.515 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.261 5.261 4 C -0.121 4.121 5 C 0.006 3.994 6 H 0.103 0.897 7 C 0.312 3.688 8 O -0.426 6.426 9 N -0.352 5.352 10 C -0.076 4.076 11 C -0.010 4.010 12 C 0.008 3.992 13 N -0.351 5.351 14 C -0.018 4.018 15 C -0.393 4.393 16 H 0.064 0.936 17 C -0.208 4.208 18 N -0.592 5.592 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.233 1.233 22 H -0.203 1.203 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.117 4.117 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.157 0.843 49 H 0.165 0.835 50 H 0.163 0.837 51 H 0.154 0.846 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.400 -6.238 15.165 25.402 hybrid contribution 0.463 0.116 -0.936 1.051 sum 19.863 -6.122 14.229 25.189 Atomic orbital electron populations 1.21860 0.95793 1.01177 1.01173 1.22212 0.95489 0.87413 1.02287 1.61689 1.23494 1.19365 1.21590 1.22514 0.86357 1.02720 1.00553 1.20530 0.90882 0.95258 0.92764 0.89714 1.20627 0.90114 0.76545 0.81520 1.90654 1.58000 1.47667 1.46267 1.48034 1.13545 1.64672 1.08993 1.22118 0.94406 1.00297 0.90734 1.21857 0.82184 0.96640 1.00316 1.21410 0.86421 0.94264 0.97056 1.44113 1.10474 1.74586 1.05971 1.21154 0.94079 0.96176 0.90418 1.18717 1.01133 1.37443 0.82049 0.93556 1.26081 1.01863 0.98167 0.94667 1.69894 1.40614 1.49231 0.99413 0.85769 0.80827 0.79200 0.76089 1.18951 1.23330 1.20289 1.19419 0.98379 0.95160 0.96827 1.21302 0.96166 0.98716 0.97501 1.21443 0.99990 0.93542 0.99425 1.21538 0.98096 1.00056 0.93855 1.21424 0.97000 0.96898 0.99715 1.21087 0.98520 0.93704 0.98388 0.95011 0.91319 0.93306 0.93480 0.88578 0.91114 0.89909 0.94417 0.90201 0.91775 0.89205 0.90977 0.91393 0.94437 0.94420 0.96857 0.93764 0.92967 0.92497 0.84263 0.83549 0.83709 0.84559 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.54 71.98 0.61 -2.94 16 2 C 0.05 1.05 5.72 86.30 0.49 1.55 16 3 N -0.54 -12.14 4.03 -905.93 -3.65 -15.79 16 4 C 0.03 0.44 8.92 127.69 1.14 1.58 16 5 C 0.12 2.86 1.46 43.42 0.06 2.92 16 6 H 0.09 1.71 5.59 -2.39 -0.01 1.70 16 7 C 0.52 16.88 4.14 87.66 0.36 17.25 16 8 O -0.55 -21.48 14.22 -3.03 -0.04 -21.53 16 9 N -0.62 -20.19 2.87 -846.77 -2.43 -22.63 16 10 C 0.07 1.67 10.01 127.77 1.28 2.95 16 11 C 0.12 4.57 5.78 86.38 0.50 5.07 16 12 C 0.13 6.10 4.63 86.38 0.40 6.50 16 13 N -0.63 -31.31 2.47 -726.91 -1.80 -33.11 16 14 C 0.13 5.44 10.70 127.77 1.37 6.80 16 15 C -0.26 -15.23 9.99 84.03 0.84 -14.39 16 16 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 17 C -0.01 -0.63 5.43 84.86 0.46 -0.17 16 18 N -0.95 -58.37 13.97 21.65 0.30 -58.07 16 19 Si 0.95 47.12 24.68 68.60 1.69 48.81 16 20 H -0.26 -11.89 6.74 99.48 0.67 -11.22 16 21 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 22 H -0.28 -13.91 6.99 99.48 0.70 -13.21 16 23 C -0.10 -2.33 3.49 -19.86 -0.07 -2.40 16 24 C -0.12 -2.41 9.20 22.27 0.20 -2.21 16 25 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 27 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 28 C -0.10 -2.50 7.52 22.27 0.17 -2.33 16 29 H 0.03 0.94 5.49 -2.39 -0.01 0.93 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.44 7.77 -2.39 -0.02 1.43 16 32 H 0.05 0.82 7.75 -2.39 -0.02 0.80 16 33 H 0.10 1.50 7.86 -2.38 -0.02 1.48 16 34 H 0.07 1.33 5.33 -2.39 -0.01 1.32 16 35 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 36 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.09 1.76 4.51 -2.39 -0.01 1.75 16 40 H 0.07 2.98 8.07 -2.39 -0.02 2.96 16 41 H 0.07 2.82 7.35 -2.39 -0.02 2.81 16 42 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 43 H 0.04 1.80 2.93 -2.39 -0.01 1.79 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 46 H 0.05 2.04 8.03 -2.39 -0.02 2.02 16 47 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.14 2.20 6.89 -2.91 -0.02 2.18 16 49 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 50 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 51 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 52 H 0.11 3.31 7.95 -2.91 -0.02 3.29 16 Total: -1.00 -72.25 399.68 3.41 -68.84 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.84 Total: 19.99 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 8.49 Total: 13.47 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -7.58 Total: -129.59 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.69 Total: 48.81 kcal Total: -72.25 3.41 -68.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.572 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds