Wall clock time and date at job start Tue Mar 31 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46765 * 2 1 4 4 C 1.52999 * 109.47300 * 119.99918 * 2 1 3 5 5 N 1.46503 * 109.46778 * 295.00040 * 4 2 1 6 6 C 1.36940 * 119.99354 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99566 * 179.72256 * 6 5 4 9 9 N 1.31617 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46557 * 60.00045 * 10 8 6 12 12 H 1.48493 * 109.47189 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.46964 * 300.00502 * 10 8 6 14 14 C 1.53005 * 109.46667 * 239.99805 * 2 1 3 15 15 N 1.46500 * 109.47112 * 65.00263 * 14 2 1 16 16 C 1.34772 * 119.99843 * 179.97438 * 15 14 2 17 17 O 1.21281 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99852 * 179.97438 * 16 15 14 19 19 C 1.53005 * 109.47145 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47145 * 179.97438 * 19 18 16 21 21 C 1.38283 * 119.92532 * 269.72654 * 20 19 18 22 22 C 1.38113 * 120.07086 * 179.72429 * 21 20 19 23 23 C 1.38906 * 119.92510 * 0.55202 * 22 21 20 24 24 N 1.39669 * 120.07626 * 179.70356 * 23 22 21 25 25 C 1.46498 * 120.00528 * 174.30558 * 24 23 22 26 26 C 1.46505 * 119.99830 * 354.30480 * 24 23 22 27 27 C 1.38915 * 119.84938 * 359.72210 * 23 22 21 28 28 C 1.38099 * 119.92977 * 0.02562 * 27 23 22 29 29 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46541 * 299.99855 * 1 2 3 31 31 H 1.09000 * 109.47223 * 59.99937 * 1 2 3 32 32 H 1.08997 * 109.47101 * 174.99898 * 4 2 1 33 33 H 1.09003 * 109.46979 * 54.99391 * 4 2 1 34 34 H 0.96991 * 120.00155 * 359.97438 * 5 4 2 35 35 H 0.97002 * 120.00182 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46433 * 184.99952 * 14 2 1 37 37 H 1.08994 * 109.47186 * 305.00025 * 14 2 1 38 38 H 0.97001 * 119.99925 * 359.97438 * 15 14 2 39 39 H 1.08995 * 109.47709 * 300.00110 * 18 16 15 40 40 H 1.08999 * 109.46982 * 60.00007 * 18 16 15 41 41 H 1.09000 * 109.47076 * 299.99866 * 19 18 16 42 42 H 1.08994 * 109.46852 * 60.00317 * 19 18 16 43 43 H 1.07998 * 119.96269 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.03194 * 180.27471 * 22 21 20 45 45 H 1.08996 * 109.47363 * 89.99905 * 25 24 23 46 46 H 1.09002 * 109.47541 * 210.00280 * 25 24 23 47 47 H 1.09003 * 109.47137 * 329.99876 * 25 24 23 48 48 H 1.09002 * 109.46838 * 5.06011 * 26 24 23 49 49 H 1.09001 * 109.47355 * 125.05622 * 26 24 23 50 50 H 1.08999 * 109.47069 * 245.05816 * 26 24 23 51 51 H 1.08003 * 120.03362 * 180.02562 * 27 23 22 52 52 H 1.07995 * 119.96736 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0355 2.4423 6 6 2.0012 -0.4207 3.6855 7 1 2.5615 -1.3385 3.7864 8 6 1.6390 0.2992 4.8157 9 7 0.9600 1.4199 4.6925 10 14 2.1139 -0.3234 6.5117 11 1 3.5927 -0.4206 6.6070 12 1 1.6119 0.6192 7.5435 13 1 1.5145 -1.6638 6.7327 14 6 2.0400 -0.7213 -1.2493 15 7 1.6524 0.0353 -2.4424 16 6 1.9963 -0.4132 -3.6659 17 8 2.6271 -1.4429 -3.7792 18 6 1.5972 0.3648 -4.8933 19 6 2.1072 -0.3565 -6.1426 20 6 1.7075 0.4212 -7.3700 21 6 0.5034 0.1529 -7.9948 22 6 0.1315 0.8677 -9.1166 23 6 0.9736 1.8491 -9.6236 24 7 0.6035 2.5696 -10.7614 25 6 1.4312 3.6870 -11.2225 26 6 -0.6126 2.2079 -11.4940 27 6 2.1851 2.1121 -8.9967 28 6 2.5485 1.3973 -7.8724 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2055 33 1 1.6054 -1.7198 1.2952 34 1 1.1490 0.8595 2.3517 35 1 0.7065 1.9228 5.4823 36 1 3.1263 -0.7995 -1.2056 37 1 1.6053 -1.7198 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.5109 0.4423 -4.9370 40 1 2.0311 1.3636 -4.8473 41 1 3.1935 -0.4343 -6.0991 42 1 1.6728 -1.3551 -6.1882 43 1 -0.1487 -0.6136 -7.6029 44 1 -0.8111 0.6607 -9.6015 45 1 2.1812 3.3190 -11.9225 46 1 0.8014 4.4249 -11.7194 47 1 1.9268 4.1486 -10.3684 48 1 -1.1395 1.4194 -10.9565 49 1 -1.2580 3.0820 -11.5810 50 1 -0.3452 1.8531 -12.4893 51 1 2.8419 2.8748 -9.3881 52 1 3.4903 1.6009 -7.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270451880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:43 Heat of formation + Delta-G solvation = -6.817158 kcal Electronic energy + Delta-G solvation = -26918.028629 eV Core-core repulsion = 23110.256948 eV Total energy + Delta-G solvation = -3807.771681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.15272 -39.59587 -37.11685 -36.69091 -34.32318 -33.48658 -32.42513 -31.47842 -30.16684 -29.43108 -28.59681 -26.73568 -25.84288 -24.92219 -23.26448 -22.65231 -22.22683 -20.63876 -20.37890 -19.67906 -17.82121 -17.32841 -16.73115 -16.37055 -15.97714 -15.64867 -15.52459 -15.30162 -14.77957 -14.54456 -14.40783 -14.15413 -13.92605 -13.70612 -13.62866 -13.21332 -13.07297 -13.02364 -12.92684 -12.51550 -12.50636 -12.38859 -12.22480 -12.13726 -11.98486 -11.44920 -11.35393 -11.04424 -10.89416 -10.88147 -10.67725 -10.55037 -10.39853 -10.11471 -10.04725 -9.76507 -9.61448 -9.17578 -8.96758 -8.85720 -7.56628 -6.90817 -5.75637 -3.03944 1.18957 1.29676 2.68622 2.71906 3.23580 3.45748 3.49884 3.51069 3.61295 4.41509 4.50753 4.58648 4.61300 4.73031 4.81996 4.84963 4.89140 4.97208 5.03344 5.10170 5.12083 5.16226 5.24015 5.25025 5.26305 5.33054 5.40239 5.41846 5.51175 5.59304 5.69202 5.79616 5.84722 5.98999 6.00847 6.00969 6.03455 6.13886 6.18254 6.27638 6.41612 6.52838 6.54151 6.58841 6.67172 6.79565 6.84374 6.89135 7.13401 7.55028 7.71456 8.26916 8.43551 9.54754 10.12273 10.47199 11.47293 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.001407 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.865174 B =19891.090359 C =20199.233864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.508 3.492 17 O -0.545 6.545 18 C -0.135 4.135 19 C -0.056 4.056 20 C -0.138 4.138 21 C -0.067 4.067 22 C -0.198 4.198 23 C 0.208 3.792 24 N -0.642 5.642 25 C 0.095 3.905 26 C 0.090 3.910 27 C -0.195 4.195 28 C -0.067 4.067 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 4.030 -35.343 35.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.379 5.379 16 C 0.295 3.705 17 O -0.423 6.423 18 C -0.175 4.175 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.085 4.085 22 C -0.220 4.220 23 C 0.107 3.893 24 N -0.354 5.354 25 C -0.048 4.048 26 C -0.053 4.053 27 C -0.217 4.217 28 C -0.085 4.085 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.167 3.290 -35.436 35.655 hybrid contribution -0.227 0.516 0.967 1.119 sum -2.394 3.806 -34.469 34.761 Atomic orbital electron populations 1.21788 0.94702 1.01899 1.01456 1.21552 0.96686 1.00476 0.94247 0.90580 1.20579 0.96595 0.94210 0.85411 1.42329 1.66955 1.27660 1.00572 1.19206 1.28858 1.05312 0.83713 0.91207 1.24726 1.01073 0.97327 0.97832 1.69646 1.43782 1.16340 1.28593 0.86256 0.78030 0.77699 0.84146 1.21268 1.21700 1.21271 1.21400 1.00056 0.95264 0.83063 1.46121 1.57743 1.27923 1.06071 1.20732 0.79282 0.85761 0.84747 1.90701 1.40030 1.24724 1.86840 1.21683 1.03131 1.00276 0.92393 1.20198 1.01935 0.97936 0.89352 1.19674 0.95851 0.99700 0.98771 1.20821 0.95563 0.97955 0.94190 1.20696 1.00680 1.00454 1.00154 1.17848 0.93171 0.91540 0.86718 1.46286 1.26806 1.34468 1.27876 1.21588 0.94986 0.88466 0.99796 1.21688 0.86522 1.00968 0.96164 1.20652 0.96750 1.04655 0.99663 1.20828 0.98768 0.94205 0.94716 0.92858 0.91195 0.93899 0.96152 0.96020 0.78220 0.93505 0.91466 0.91456 0.76539 0.88946 0.88926 0.90531 0.90549 0.86087 0.86025 0.93525 0.91656 0.91316 0.90335 0.92707 0.93115 0.86207 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.71 2.46 -90.61 -0.22 -1.94 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 5 N -0.73 -18.41 5.33 -59.91 -0.32 -18.73 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 15 N -0.73 -8.44 5.28 -60.29 -0.32 -8.76 16 16 C 0.51 6.26 7.83 -10.99 -0.09 6.17 16 17 O -0.55 -8.89 15.98 5.56 0.09 -8.80 16 18 C -0.13 -1.17 5.68 -27.88 -0.16 -1.33 16 19 C -0.06 -0.52 4.63 -27.88 -0.13 -0.65 16 20 C -0.14 -1.21 5.14 -104.59 -0.54 -1.75 16 21 C -0.07 -0.56 9.69 -39.61 -0.38 -0.94 16 22 C -0.20 -1.60 9.31 -39.38 -0.37 -1.97 16 23 C 0.21 1.74 6.54 -83.79 -0.55 1.20 16 24 N -0.64 -4.36 3.41 -187.55 -0.64 -5.00 16 25 C 0.09 0.45 10.10 59.85 0.60 1.05 16 26 C 0.09 0.42 10.62 59.85 0.64 1.06 16 27 C -0.19 -1.60 9.16 -39.38 -0.36 -1.96 16 28 C -0.07 -0.56 9.69 -39.61 -0.38 -0.94 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.73 7.65 -40.82 -0.31 3.42 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 42 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.78 5.74 -52.49 -0.30 0.48 16 45 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.22 8.07 -51.93 -0.42 -0.20 16 47 H 0.07 0.31 6.45 -51.93 -0.34 -0.02 16 48 H 0.08 0.34 5.31 -51.93 -0.28 0.06 16 49 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.12 0.81 6.31 -52.48 -0.33 0.48 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 418.59 15.07 6.31 6.31 Total: -1.00 -33.95 418.59 -9.95 -43.91 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.88 Total: 7.30 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.89 Total: -6.24 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.55 Total: -59.97 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.95 -9.95 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270451880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.089 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds