Wall clock time and date at job start Tue Mar 31 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46765 * 2 1 4 4 C 1.52999 * 109.47300 * 119.99918 * 2 1 3 5 5 N 1.46503 * 109.46778 * 295.00040 * 4 2 1 6 6 C 1.36940 * 119.99354 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99566 * 179.72256 * 6 5 4 9 9 N 1.31617 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46557 * 60.00045 * 10 8 6 12 12 H 1.48493 * 109.47189 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.46964 * 300.00502 * 10 8 6 14 14 C 1.53005 * 109.46667 * 239.99805 * 2 1 3 15 15 N 1.46500 * 109.47112 * 65.00263 * 14 2 1 16 16 C 1.34772 * 119.99843 * 179.97438 * 15 14 2 17 17 O 1.21281 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99852 * 179.97438 * 16 15 14 19 19 C 1.53005 * 109.47145 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47145 * 179.97438 * 19 18 16 21 21 C 1.38283 * 119.92532 * 269.72654 * 20 19 18 22 22 C 1.38113 * 120.07086 * 179.72429 * 21 20 19 23 23 C 1.38906 * 119.92510 * 0.55202 * 22 21 20 24 24 N 1.39669 * 120.07626 * 179.70356 * 23 22 21 25 25 C 1.46498 * 120.00528 * 174.30558 * 24 23 22 26 26 C 1.46505 * 119.99830 * 354.30480 * 24 23 22 27 27 C 1.38915 * 119.84938 * 359.72210 * 23 22 21 28 28 C 1.38099 * 119.92977 * 0.02562 * 27 23 22 29 29 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46541 * 299.99855 * 1 2 3 31 31 H 1.09000 * 109.47223 * 59.99937 * 1 2 3 32 32 H 1.08997 * 109.47101 * 174.99898 * 4 2 1 33 33 H 1.09003 * 109.46979 * 54.99391 * 4 2 1 34 34 H 0.96991 * 120.00155 * 359.97438 * 5 4 2 35 35 H 0.97002 * 120.00182 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46433 * 184.99952 * 14 2 1 37 37 H 1.08994 * 109.47186 * 305.00025 * 14 2 1 38 38 H 0.97001 * 119.99925 * 359.97438 * 15 14 2 39 39 H 1.08995 * 109.47709 * 300.00110 * 18 16 15 40 40 H 1.08999 * 109.46982 * 60.00007 * 18 16 15 41 41 H 1.09000 * 109.47076 * 299.99866 * 19 18 16 42 42 H 1.08994 * 109.46852 * 60.00317 * 19 18 16 43 43 H 1.07998 * 119.96269 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.03194 * 180.27471 * 22 21 20 45 45 H 1.08996 * 109.47363 * 89.99905 * 25 24 23 46 46 H 1.09002 * 109.47541 * 210.00280 * 25 24 23 47 47 H 1.09003 * 109.47137 * 329.99876 * 25 24 23 48 48 H 1.09002 * 109.46838 * 5.06011 * 26 24 23 49 49 H 1.09001 * 109.47355 * 125.05622 * 26 24 23 50 50 H 1.08999 * 109.47069 * 245.05816 * 26 24 23 51 51 H 1.08003 * 120.03362 * 180.02562 * 27 23 22 52 52 H 1.07995 * 119.96736 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0355 2.4423 6 6 2.0012 -0.4207 3.6855 7 1 2.5615 -1.3385 3.7864 8 6 1.6390 0.2992 4.8157 9 7 0.9600 1.4199 4.6925 10 14 2.1139 -0.3234 6.5117 11 1 3.5927 -0.4206 6.6070 12 1 1.6119 0.6192 7.5435 13 1 1.5145 -1.6638 6.7327 14 6 2.0400 -0.7213 -1.2493 15 7 1.6524 0.0353 -2.4424 16 6 1.9963 -0.4132 -3.6659 17 8 2.6271 -1.4429 -3.7792 18 6 1.5972 0.3648 -4.8933 19 6 2.1072 -0.3565 -6.1426 20 6 1.7075 0.4212 -7.3700 21 6 0.5034 0.1529 -7.9948 22 6 0.1315 0.8677 -9.1166 23 6 0.9736 1.8491 -9.6236 24 7 0.6035 2.5696 -10.7614 25 6 1.4312 3.6870 -11.2225 26 6 -0.6126 2.2079 -11.4940 27 6 2.1851 2.1121 -8.9967 28 6 2.5485 1.3973 -7.8724 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2055 33 1 1.6054 -1.7198 1.2952 34 1 1.1490 0.8595 2.3517 35 1 0.7065 1.9228 5.4823 36 1 3.1263 -0.7995 -1.2056 37 1 1.6053 -1.7198 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.5109 0.4423 -4.9370 40 1 2.0311 1.3636 -4.8473 41 1 3.1935 -0.4343 -6.0991 42 1 1.6728 -1.3551 -6.1882 43 1 -0.1487 -0.6136 -7.6029 44 1 -0.8111 0.6607 -9.6015 45 1 2.1812 3.3190 -11.9225 46 1 0.8014 4.4249 -11.7194 47 1 1.9268 4.1486 -10.3684 48 1 -1.1395 1.4194 -10.9565 49 1 -1.2580 3.0820 -11.5810 50 1 -0.3452 1.8531 -12.4893 51 1 2.8419 2.8748 -9.3881 52 1 3.4903 1.6009 -7.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270451880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:42 Heat of formation + Delta-G solvation = -27.250353 kcal Electronic energy + Delta-G solvation = -26918.914678 eV Core-core repulsion = 23110.256948 eV Total energy + Delta-G solvation = -3808.657730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92827 -40.41250 -38.28357 -37.46589 -35.93339 -34.26873 -33.94881 -32.03316 -31.91367 -30.18762 -28.98172 -27.82752 -27.25897 -26.00119 -24.44957 -23.52198 -23.21971 -21.60470 -21.20838 -20.85446 -19.18944 -18.36126 -17.84104 -17.22403 -16.99859 -16.53288 -16.42815 -15.98544 -15.87188 -15.83989 -15.45745 -15.20829 -14.94915 -14.84626 -14.45164 -14.39412 -14.23156 -13.86570 -13.69374 -13.55252 -13.40182 -13.35653 -12.95767 -12.90860 -12.79124 -12.76598 -12.72377 -12.21266 -12.17676 -12.09093 -12.01916 -11.97277 -11.70072 -11.64043 -11.48419 -10.93141 -10.88947 -10.50685 -10.03725 -9.77282 -8.98840 -8.09274 -7.94802 -5.23137 0.59443 0.68626 1.48157 1.50933 1.57080 1.71789 2.26038 2.29867 2.57814 2.99241 3.38743 3.74670 3.79749 3.91447 3.97879 4.06485 4.09506 4.18616 4.23327 4.27635 4.34174 4.44350 4.52187 4.53249 4.56496 4.62844 4.66560 4.72907 4.73203 4.77801 4.83960 4.88825 4.90482 4.93348 4.95493 5.06431 5.08325 5.13957 5.24363 5.27803 5.36253 5.43598 5.44883 5.50185 5.52972 5.58487 5.90569 6.01547 6.27646 6.39033 6.60463 6.62401 7.32194 7.34662 8.09824 8.34523 9.28331 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.001407 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.865174 B =19891.090359 C =20199.233864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.250 4.250 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.717 5.717 16 C 0.508 3.492 17 O -0.589 6.589 18 C -0.124 4.124 19 C -0.050 4.050 20 C -0.148 4.148 21 C -0.073 4.073 22 C -0.207 4.207 23 C 0.198 3.802 24 N -0.649 5.649 25 C 0.090 3.910 26 C 0.085 3.915 27 C -0.205 4.205 28 C -0.073 4.073 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.131 0.869 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 4.559 -36.714 37.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.370 5.370 16 C 0.296 3.704 17 O -0.469 6.469 18 C -0.163 4.163 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.091 4.091 22 C -0.229 4.229 23 C 0.096 3.904 24 N -0.361 5.361 25 C -0.052 4.052 26 C -0.058 4.058 27 C -0.228 4.228 28 C -0.092 4.092 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.148 0.852 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.656 3.827 -36.850 37.143 hybrid contribution -0.067 0.340 1.280 1.326 sum -2.724 4.167 -35.570 35.916 Atomic orbital electron populations 1.21723 0.93855 1.01875 1.01781 1.21333 0.97178 1.00020 0.92777 0.90339 1.20731 0.96461 0.94141 0.85765 1.42490 1.66835 1.27789 1.01299 1.19606 1.28199 1.05269 0.85150 0.90927 1.25527 1.01659 0.97774 1.01466 1.69795 1.45201 1.17555 1.29207 0.85228 0.77896 0.77182 0.79551 1.20495 1.21945 1.20490 1.21094 0.99320 0.95033 0.83265 1.45990 1.57584 1.28156 1.05225 1.21355 0.78204 0.85274 0.85546 1.90689 1.42039 1.26806 1.87412 1.21678 1.04442 1.00244 0.89971 1.20085 1.01041 0.97618 0.90063 1.19634 0.96358 1.00129 0.98860 1.20991 0.95619 0.98191 0.94326 1.20904 1.01332 1.00454 1.00235 1.18073 0.93293 0.91743 0.87280 1.46549 1.27459 1.34575 1.27491 1.21709 0.95259 0.88309 0.99970 1.21820 0.86090 1.01613 0.96266 1.20832 0.97123 1.05066 0.99761 1.20983 0.99090 0.94196 0.94940 0.93065 0.93932 0.90430 0.96378 0.96186 0.79071 0.93953 0.92449 0.92064 0.74848 0.86848 0.87017 0.91797 0.91662 0.85119 0.84704 0.93248 0.90166 0.91275 0.90136 0.91588 0.92436 0.85168 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.94 71.98 0.64 -3.18 16 2 C -0.09 -2.83 2.46 -10.79 -0.03 -2.85 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.16 6.25 5.65 86.38 0.49 6.74 16 5 N -0.74 -37.60 5.33 -343.45 -1.83 -39.43 16 6 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 10 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.14 3.70 5.06 86.38 0.44 4.14 16 15 N -0.72 -15.27 5.28 -463.06 -2.45 -17.71 16 16 C 0.51 11.79 7.83 87.66 0.69 12.47 16 17 O -0.59 -19.02 15.98 -3.03 -0.05 -19.07 16 18 C -0.12 -1.90 5.68 29.85 0.17 -1.73 16 19 C -0.05 -0.89 4.63 29.85 0.14 -0.75 16 20 C -0.15 -2.44 5.14 -19.84 -0.10 -2.54 16 21 C -0.07 -1.13 9.69 22.25 0.22 -0.91 16 22 C -0.21 -3.09 9.31 22.40 0.21 -2.88 16 23 C 0.20 3.07 6.54 38.21 0.25 3.32 16 24 N -0.65 -7.80 3.41 -747.27 -2.55 -10.35 16 25 C 0.09 0.72 10.10 127.77 1.29 2.01 16 26 C 0.08 0.65 10.62 127.77 1.36 2.01 16 27 C -0.21 -3.16 9.16 22.40 0.21 -2.95 16 28 C -0.07 -1.17 9.69 22.25 0.22 -0.95 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.45 7.18 -2.39 -0.02 1.44 16 31 H 0.08 1.64 7.18 -2.39 -0.02 1.62 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.38 19.96 6.85 -92.71 -0.64 19.33 16 35 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 6.52 7.65 -92.71 -0.71 5.81 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 42 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 43 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.14 1.53 5.74 -2.91 -0.02 1.52 16 45 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 0.38 8.07 -2.39 -0.02 0.37 16 47 H 0.07 0.53 6.45 -2.39 -0.02 0.52 16 48 H 0.08 0.57 5.31 -2.39 -0.01 0.55 16 49 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.13 1.61 6.31 -2.91 -0.02 1.59 16 52 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -72.84 418.59 2.49 -70.36 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.43 Total: 31.51 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 7.48 Total: -5.07 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.54 Total: -126.07 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.84 2.49 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270451880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.105 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds