Wall clock time and date at job start Tue Mar 31 2020 17:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47562 * 2 1 4 4 C 1.53007 * 109.47118 * 120.00382 * 2 1 3 5 5 N 1.46500 * 109.46693 * 294.99714 * 4 2 1 6 6 C 1.36937 * 120.00021 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00044 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00051 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99750 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47413 * 119.99482 * 10 8 6 13 13 H 1.48501 * 109.46620 * 239.99522 * 10 8 6 14 14 C 1.53006 * 109.47235 * 239.99882 * 2 1 3 15 15 N 1.46499 * 109.46751 * 64.99951 * 14 2 1 16 16 C 1.34781 * 119.99679 * 179.97438 * 15 14 2 17 17 O 1.21282 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99913 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47114 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47114 * 179.97438 * 19 18 16 21 21 C 1.38311 * 119.96542 * 270.02404 * 20 19 18 22 22 C 1.38266 * 120.15052 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07577 * 359.74818 * 22 21 20 24 24 C 1.38893 * 119.92137 * 0.48472 * 23 22 21 25 25 N 1.39675 * 120.06980 * 179.79253 * 24 23 22 26 26 C 1.46507 * 119.99622 * 179.72195 * 25 24 23 27 27 C 1.46498 * 120.00353 * 359.44307 * 25 24 23 28 28 C 1.38080 * 119.96474 * 90.00088 * 20 19 18 29 29 H 1.08992 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47045 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46879 * 60.00028 * 1 2 3 32 32 H 1.08993 * 109.47293 * 54.99397 * 4 2 1 33 33 H 1.09004 * 109.47067 * 175.00138 * 4 2 1 34 34 H 0.97006 * 120.00043 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00022 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46931 * 305.00507 * 14 2 1 37 37 H 1.08994 * 109.47247 * 185.00422 * 14 2 1 38 38 H 0.97000 * 120.00292 * 0.02562 * 15 14 2 39 39 H 1.09006 * 109.46849 * 59.99968 * 18 16 15 40 40 H 1.08998 * 109.47331 * 300.00747 * 18 16 15 41 41 H 1.09001 * 109.46867 * 60.00395 * 19 18 16 42 42 H 1.08999 * 109.47174 * 299.99923 * 19 18 16 43 43 H 1.08001 * 119.92073 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.95964 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.03594 * 180.27150 * 23 22 21 46 46 H 1.08997 * 109.47067 * 60.00272 * 26 25 24 47 47 H 1.08998 * 109.46861 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.46860 * 299.99623 * 26 25 24 49 49 H 1.09009 * 109.46732 * 90.00268 * 27 25 24 50 50 H 1.08998 * 109.47268 * 209.99630 * 27 25 24 51 51 H 1.08996 * 109.47244 * 330.00204 * 27 25 24 52 52 H 1.08008 * 120.03420 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0019 -0.4203 3.6855 7 1 2.5629 -1.3377 3.7864 8 6 1.6342 0.2963 4.8161 9 7 0.9502 1.4140 4.6931 10 14 2.1117 -0.3249 6.5119 11 1 2.8724 -1.5932 6.3784 12 1 2.9562 0.6901 7.1913 13 1 0.8854 -0.5657 7.3140 14 6 2.0400 -0.7213 -1.2493 15 7 1.6524 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5983 0.3655 -4.8932 19 6 2.1082 -0.3558 -6.1425 20 6 1.7094 0.4224 -7.3698 21 6 0.5026 0.1600 -7.9923 22 6 0.1327 0.8721 -9.1183 23 6 0.9656 1.8520 -9.6222 24 6 2.1804 2.1147 -9.0023 25 7 3.0270 3.1020 -9.5118 26 6 4.3053 3.3820 -8.8531 27 6 2.6395 3.8532 -10.7083 28 6 2.5491 1.3971 -7.8714 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2056 34 1 1.1489 0.8594 2.3517 35 1 0.6936 1.9150 5.4831 36 1 1.6053 -1.7198 -1.2952 37 1 3.1263 -0.7996 -1.2056 38 1 1.1488 0.8594 -2.3517 39 1 2.0329 1.3640 -4.8469 40 1 0.5120 0.4438 -4.9372 41 1 1.6731 -1.3542 -6.1885 42 1 3.1944 -0.4345 -6.0987 43 1 -0.1524 -0.6029 -7.5980 44 1 -0.8102 0.6644 -9.6022 45 1 0.6740 2.4109 -10.4992 46 1 4.9197 2.4817 -8.8548 47 1 4.8237 4.1770 -9.3890 48 1 4.1233 3.6959 -7.8253 49 1 2.0803 4.7416 -10.4143 50 1 3.5337 4.1515 -11.2555 51 1 2.0161 3.2258 -11.3453 52 1 3.4915 1.6015 -7.3848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270486839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:51 Heat of formation + Delta-G solvation = -10.796552 kcal Electronic energy + Delta-G solvation = -27141.266994 eV Core-core repulsion = 23333.322754 eV Total energy + Delta-G solvation = -3807.944240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.15917 -39.59165 -37.03968 -36.67399 -34.35035 -33.89901 -32.46845 -30.77223 -30.20427 -29.75344 -28.51855 -26.59377 -25.55077 -25.15350 -24.15790 -22.37702 -21.86269 -20.61234 -20.32262 -19.69366 -17.67612 -17.26594 -16.66659 -16.33980 -15.98525 -15.79583 -15.66172 -15.45900 -14.79834 -14.59665 -14.39672 -14.12466 -13.88629 -13.67134 -13.39515 -13.23389 -13.08383 -13.03850 -12.92297 -12.59307 -12.52653 -12.26179 -12.22343 -12.11209 -11.99941 -11.70110 -11.20961 -11.05982 -11.00927 -10.91300 -10.69751 -10.55621 -10.40247 -10.11940 -10.03708 -9.82388 -9.65239 -8.98987 -8.96859 -8.87684 -7.62019 -6.91644 -5.76862 -3.05074 1.16291 1.36676 2.65613 2.73993 3.20917 3.43850 3.49861 3.51932 3.63520 4.42025 4.55340 4.59460 4.60573 4.73374 4.82170 4.84849 4.89380 4.95061 5.01917 5.12553 5.15333 5.21111 5.23566 5.24390 5.27701 5.34797 5.39305 5.40439 5.43976 5.58443 5.72204 5.74805 5.83544 5.93137 5.98290 6.01906 6.04068 6.12758 6.26490 6.29144 6.40622 6.48446 6.52414 6.61185 6.66291 6.78492 6.87496 6.88065 7.16027 7.52422 7.71583 8.24015 8.42335 9.53723 10.11189 10.46009 11.46234 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001518 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.768776 B =18445.803247 C =18846.015904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.726 5.726 16 C 0.509 3.491 17 O -0.545 6.545 18 C -0.134 4.134 19 C -0.065 4.065 20 C -0.034 4.034 21 C -0.173 4.173 22 C -0.071 4.071 23 C -0.203 4.203 24 C 0.213 3.787 25 N -0.641 5.641 26 C 0.096 3.904 27 C 0.094 3.906 28 C -0.190 4.190 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 4.639 -34.012 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.378 5.378 16 C 0.295 3.705 17 O -0.422 6.422 18 C -0.174 4.174 19 C -0.103 4.103 20 C -0.035 4.035 21 C -0.193 4.193 22 C -0.090 4.090 23 C -0.225 4.225 24 C 0.112 3.888 25 N -0.353 5.353 26 C -0.048 4.048 27 C -0.049 4.049 28 C -0.212 4.212 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.220 3.927 -34.017 34.265 hybrid contribution -0.180 0.545 1.018 1.169 sum 1.040 4.472 -32.999 33.317 Atomic orbital electron populations 1.21787 0.94680 1.01919 1.01473 1.21553 0.96704 1.00467 0.94234 0.90583 1.20581 0.96599 0.94218 0.85405 1.42347 1.66928 1.27666 1.00598 1.19298 1.28531 1.05442 0.83672 0.91085 1.24732 1.01037 0.97426 0.97852 1.69665 1.43651 1.16653 1.28353 0.86110 0.77592 0.77839 0.84629 1.20533 1.21891 1.21887 1.21406 1.00060 0.95280 0.83035 1.46112 1.57735 1.27907 1.06046 1.20678 0.79301 0.85754 0.84721 1.90705 1.40044 1.24670 1.86823 1.21633 1.03293 1.00230 0.92206 1.20335 1.02227 0.98258 0.89466 1.19641 0.93672 0.94683 0.95479 1.20847 0.97412 1.02943 0.98100 1.20864 0.98451 0.94338 0.95364 1.20653 0.95144 1.03486 1.03229 1.17793 0.89945 0.88424 0.92629 1.46318 1.19687 1.39088 1.30215 1.21604 0.84523 1.00875 0.97757 1.21645 1.00733 0.95707 0.86835 1.20530 1.01847 1.00465 0.98362 0.92841 0.91182 0.93892 0.95997 0.96147 0.78221 0.93600 0.91417 0.91453 0.76515 0.88865 0.88723 0.90048 0.90262 0.86348 0.86250 0.86321 0.92772 0.90967 0.92667 0.93462 0.91643 0.91393 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.61 -0.22 -1.93 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.73 -8.36 5.28 -60.29 -0.32 -8.68 16 16 C 0.51 6.21 7.83 -10.98 -0.09 6.13 16 17 O -0.54 -8.80 15.98 5.56 0.09 -8.71 16 18 C -0.13 -1.16 5.68 -27.88 -0.16 -1.32 16 19 C -0.07 -0.61 4.63 -27.88 -0.13 -0.74 16 20 C -0.03 -0.31 5.13 -104.65 -0.54 -0.85 16 21 C -0.17 -1.50 9.70 -39.54 -0.38 -1.88 16 22 C -0.07 -0.57 10.04 -39.61 -0.40 -0.97 16 23 C -0.20 -1.66 9.20 -39.38 -0.36 -2.02 16 24 C 0.21 1.87 6.55 -83.79 -0.55 1.32 16 25 N -0.64 -4.58 3.41 -187.55 -0.64 -5.22 16 26 C 0.10 0.52 9.40 59.85 0.56 1.08 16 27 C 0.09 0.45 10.15 59.85 0.61 1.06 16 28 C -0.19 -1.71 8.96 -39.38 -0.35 -2.07 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.70 7.66 -40.82 -0.31 3.38 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.77 6.16 -52.49 -0.32 0.45 16 46 H 0.05 0.30 7.95 -51.93 -0.41 -0.12 16 47 H 0.07 0.26 7.79 -51.93 -0.40 -0.14 16 48 H 0.05 0.31 7.95 -51.93 -0.41 -0.11 16 49 H 0.05 0.21 8.14 -51.92 -0.42 -0.21 16 50 H 0.06 0.22 7.92 -51.93 -0.41 -0.19 16 51 H 0.07 0.30 6.22 -51.93 -0.32 -0.03 16 52 H 0.12 0.99 6.74 -52.48 -0.35 0.64 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -33.90 420.02 -10.13 -44.04 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -9.01 Total: 7.29 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.97 Total: -6.40 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.55 Total: -60.02 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.90 -10.13 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270486839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.243 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds