Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47562 * 2 1 4 4 C 1.53007 * 109.47118 * 120.00382 * 2 1 3 5 5 N 1.46500 * 109.46693 * 294.99714 * 4 2 1 6 6 C 1.36937 * 120.00021 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00044 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00051 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99750 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47413 * 119.99482 * 10 8 6 13 13 H 1.48501 * 109.46620 * 239.99522 * 10 8 6 14 14 C 1.53006 * 109.47235 * 239.99882 * 2 1 3 15 15 N 1.46499 * 109.46751 * 64.99951 * 14 2 1 16 16 C 1.34781 * 119.99679 * 179.97438 * 15 14 2 17 17 O 1.21282 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99913 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47114 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47114 * 179.97438 * 19 18 16 21 21 C 1.38311 * 119.96542 * 270.02404 * 20 19 18 22 22 C 1.38266 * 120.15052 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07577 * 359.74818 * 22 21 20 24 24 C 1.38893 * 119.92137 * 0.48472 * 23 22 21 25 25 N 1.39675 * 120.06980 * 179.79253 * 24 23 22 26 26 C 1.46507 * 119.99622 * 179.72195 * 25 24 23 27 27 C 1.46498 * 120.00353 * 359.44307 * 25 24 23 28 28 C 1.38080 * 119.96474 * 90.00088 * 20 19 18 29 29 H 1.08992 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47045 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46879 * 60.00028 * 1 2 3 32 32 H 1.08993 * 109.47293 * 54.99397 * 4 2 1 33 33 H 1.09004 * 109.47067 * 175.00138 * 4 2 1 34 34 H 0.97006 * 120.00043 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00022 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46931 * 305.00507 * 14 2 1 37 37 H 1.08994 * 109.47247 * 185.00422 * 14 2 1 38 38 H 0.97000 * 120.00292 * 0.02562 * 15 14 2 39 39 H 1.09006 * 109.46849 * 59.99968 * 18 16 15 40 40 H 1.08998 * 109.47331 * 300.00747 * 18 16 15 41 41 H 1.09001 * 109.46867 * 60.00395 * 19 18 16 42 42 H 1.08999 * 109.47174 * 299.99923 * 19 18 16 43 43 H 1.08001 * 119.92073 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.95964 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.03594 * 180.27150 * 23 22 21 46 46 H 1.08997 * 109.47067 * 60.00272 * 26 25 24 47 47 H 1.08998 * 109.46861 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.46860 * 299.99623 * 26 25 24 49 49 H 1.09009 * 109.46732 * 90.00268 * 27 25 24 50 50 H 1.08998 * 109.47268 * 209.99630 * 27 25 24 51 51 H 1.08996 * 109.47244 * 330.00204 * 27 25 24 52 52 H 1.08008 * 120.03420 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0019 -0.4203 3.6855 7 1 2.5629 -1.3377 3.7864 8 6 1.6342 0.2963 4.8161 9 7 0.9502 1.4140 4.6931 10 14 2.1117 -0.3249 6.5119 11 1 2.8724 -1.5932 6.3784 12 1 2.9562 0.6901 7.1913 13 1 0.8854 -0.5657 7.3140 14 6 2.0400 -0.7213 -1.2493 15 7 1.6524 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5983 0.3655 -4.8932 19 6 2.1082 -0.3558 -6.1425 20 6 1.7094 0.4224 -7.3698 21 6 0.5026 0.1600 -7.9923 22 6 0.1327 0.8721 -9.1183 23 6 0.9656 1.8520 -9.6222 24 6 2.1804 2.1147 -9.0023 25 7 3.0270 3.1020 -9.5118 26 6 4.3053 3.3820 -8.8531 27 6 2.6395 3.8532 -10.7083 28 6 2.5491 1.3971 -7.8714 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2056 34 1 1.1489 0.8594 2.3517 35 1 0.6936 1.9150 5.4831 36 1 1.6053 -1.7198 -1.2952 37 1 3.1263 -0.7996 -1.2056 38 1 1.1488 0.8594 -2.3517 39 1 2.0329 1.3640 -4.8469 40 1 0.5120 0.4438 -4.9372 41 1 1.6731 -1.3542 -6.1885 42 1 3.1944 -0.4345 -6.0987 43 1 -0.1524 -0.6029 -7.5980 44 1 -0.8102 0.6644 -9.6022 45 1 0.6740 2.4109 -10.4992 46 1 4.9197 2.4817 -8.8548 47 1 4.8237 4.1770 -9.3890 48 1 4.1233 3.6959 -7.8253 49 1 2.0803 4.7416 -10.4143 50 1 3.5337 4.1515 -11.2555 51 1 2.0161 3.2258 -11.3453 52 1 3.4915 1.6015 -7.3848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270486839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -31.178723 kcal Electronic energy + Delta-G solvation = -27142.150832 eV Core-core repulsion = 23333.322754 eV Total energy + Delta-G solvation = -3808.828077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.96038 -40.40539 -38.28461 -37.37452 -35.95112 -34.62067 -34.05576 -31.98372 -31.27716 -30.53289 -29.01516 -27.77031 -27.13858 -25.66565 -25.27200 -24.00863 -22.49003 -21.62189 -21.17782 -20.80790 -19.20119 -18.28251 -17.70356 -17.23646 -16.99791 -16.52973 -16.44231 -16.36005 -15.91608 -15.85397 -15.48766 -15.26679 -14.96405 -14.84403 -14.52083 -14.26830 -13.99845 -13.88462 -13.64351 -13.55746 -13.45542 -13.42744 -13.00474 -12.95914 -12.82924 -12.76793 -12.67398 -12.32393 -12.17232 -12.12548 -11.98932 -11.89456 -11.70050 -11.65568 -11.62290 -10.95770 -10.90041 -10.62149 -10.05403 -9.60982 -8.99402 -8.16501 -7.95831 -5.23994 0.53600 0.75051 1.47935 1.48148 1.58536 1.68944 2.22719 2.29601 2.56886 3.00035 3.38108 3.69602 3.74648 3.97034 3.98836 4.05592 4.08675 4.16532 4.23709 4.26973 4.33687 4.41383 4.44657 4.52934 4.55856 4.62089 4.69031 4.69573 4.72705 4.78699 4.82461 4.83123 4.89462 4.93039 4.94881 5.05915 5.09278 5.13424 5.13700 5.23532 5.35482 5.43010 5.44339 5.50191 5.51875 5.69054 5.85797 6.02552 6.27084 6.39296 6.59790 6.60454 7.29518 7.33971 8.09075 8.33591 9.27784 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001518 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.768776 B =18445.803247 C =18846.015904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.138 3.862 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.588 6.588 18 C -0.122 4.122 19 C -0.059 4.059 20 C -0.040 4.040 21 C -0.185 4.185 22 C -0.075 4.075 23 C -0.211 4.211 24 C 0.202 3.798 25 N -0.647 5.647 26 C 0.092 3.908 27 C 0.089 3.911 28 C -0.204 4.204 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.415 0.585 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.071 0.929 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 5.218 -35.475 35.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.013 3.987 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.468 6.468 18 C -0.162 4.162 19 C -0.097 4.097 20 C -0.040 4.040 21 C -0.205 4.205 22 C -0.093 4.093 23 C -0.234 4.234 24 C 0.100 3.900 25 N -0.359 5.359 26 C -0.051 4.051 27 C -0.053 4.053 28 C -0.226 4.226 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.252 0.748 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.099 0.901 51 H 0.089 0.911 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.919 4.518 -35.514 35.812 hybrid contribution -0.053 0.358 1.378 1.425 sum 0.865 4.876 -34.136 34.493 Atomic orbital electron populations 1.21723 0.93858 1.01895 1.01784 1.21333 0.97174 1.00020 0.92773 0.90334 1.20735 0.96488 0.94149 0.85745 1.42509 1.66796 1.27796 1.01324 1.19679 1.27820 1.05337 0.85105 0.90871 1.25531 1.01656 0.97892 1.01469 1.69807 1.45079 1.17880 1.29039 0.85086 0.77111 0.77607 0.80030 1.19262 1.21941 1.21937 1.21103 0.99352 0.95048 0.83209 1.45975 1.57570 1.28139 1.05199 1.21265 0.78239 0.85262 0.85496 1.90692 1.42021 1.26723 1.87388 1.21613 1.04594 1.00137 0.89832 1.20230 1.01341 0.97995 0.90157 1.19618 0.94080 0.94846 0.95481 1.21018 0.97493 1.03453 0.98568 1.21136 0.99177 0.93905 0.95091 1.20906 0.95019 1.03709 1.03723 1.18007 0.90528 0.88829 0.92679 1.46569 1.19840 1.38755 1.30755 1.21694 0.84130 1.01368 0.97889 1.21789 1.01670 0.95607 0.86249 1.20620 1.02080 1.00962 0.98939 0.93042 0.93932 0.90438 0.96150 0.96334 0.79071 0.93961 0.92004 0.92394 0.74833 0.87088 0.86614 0.91022 0.91544 0.85564 0.84319 0.84873 0.93120 0.89041 0.92996 0.93110 0.90070 0.91063 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.94 71.98 0.64 -3.18 16 2 C -0.09 -2.81 2.46 -10.79 -0.03 -2.83 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.21 5.65 86.38 0.49 6.70 16 5 N -0.74 -37.49 5.33 -343.44 -1.83 -39.32 16 6 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 7 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 10 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 C 0.14 3.67 5.06 86.38 0.44 4.11 16 15 N -0.72 -15.15 5.28 -463.05 -2.45 -17.60 16 16 C 0.51 11.77 7.83 87.66 0.69 12.45 16 17 O -0.59 -18.86 15.98 -3.03 -0.05 -18.91 16 18 C -0.12 -1.90 5.68 29.85 0.17 -1.74 16 19 C -0.06 -1.07 4.63 29.85 0.14 -0.94 16 20 C -0.04 -0.69 5.13 -19.88 -0.10 -0.79 16 21 C -0.19 -2.98 9.70 22.29 0.22 -2.76 16 22 C -0.07 -1.07 10.04 22.25 0.22 -0.85 16 23 C -0.21 -3.14 9.20 22.40 0.21 -2.94 16 24 C 0.20 3.33 6.55 38.21 0.25 3.58 16 25 N -0.65 -8.40 3.41 -747.27 -2.55 -10.95 16 26 C 0.09 0.90 9.40 127.77 1.20 2.10 16 27 C 0.09 0.70 10.15 127.77 1.30 1.99 16 28 C -0.20 -3.55 8.96 22.40 0.20 -3.35 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 31 H 0.08 1.64 7.18 -2.38 -0.02 1.62 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.38 19.92 6.85 -92.70 -0.64 19.28 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.41 6.48 7.66 -92.71 -0.71 5.77 16 39 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 42 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 43 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.13 1.49 6.16 -2.91 -0.02 1.47 16 46 H 0.05 0.52 7.95 -2.39 -0.02 0.51 16 47 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 48 H 0.05 0.54 7.95 -2.39 -0.02 0.52 16 49 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 50 H 0.08 0.37 7.92 -2.39 -0.02 0.35 16 51 H 0.07 0.50 6.22 -2.39 -0.01 0.48 16 52 H 0.12 1.97 6.74 -2.91 -0.02 1.95 16 Total: -1.00 -72.88 420.02 2.33 -70.55 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.44 Total: 31.74 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 7.34 Total: -5.30 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.54 Total: -126.44 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.88 2.33 -70.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270486839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.367 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds