Wall clock time and date at job start Tue Mar 31 2020 17:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47197 * 120.00567 * 2 1 3 5 5 N 1.46501 * 109.47013 * 175.00151 * 4 2 1 6 6 C 1.36940 * 119.99946 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00147 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99927 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00122 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46793 * 60.00171 * 10 8 6 12 12 H 1.48501 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47141 * 300.00129 * 10 8 6 14 14 N 1.46498 * 109.46970 * 240.00461 * 2 1 3 15 15 C 1.46498 * 120.00275 * 299.99603 * 14 2 1 16 16 C 1.34780 * 120.00177 * 119.99700 * 14 2 1 17 17 O 1.21551 * 119.99969 * 4.86361 * 16 14 2 18 18 C 1.47845 * 120.00009 * 184.85892 * 16 14 2 19 19 C 1.39589 * 120.14924 * 306.12100 * 18 16 14 20 20 C 1.37937 * 119.85511 * 179.97438 * 19 18 16 21 21 C 1.38375 * 120.14636 * 359.74200 * 20 19 18 22 22 C 1.38336 * 120.29027 * 0.51449 * 21 20 19 23 23 C 1.37983 * 120.14797 * 359.49012 * 22 21 20 24 24 C 1.50693 * 120.07725 * 180.23101 * 23 22 21 25 25 C 1.52996 * 109.47527 * 267.90755 * 24 23 22 26 26 N 1.46893 * 109.47376 * 179.97438 * 25 24 23 27 27 C 1.46909 * 110.99870 * 169.99934 * 26 25 24 28 28 C 1.46899 * 111.00088 * 293.95206 * 26 25 24 29 29 H 1.08997 * 109.47129 * 299.99084 * 1 2 3 30 30 H 1.08997 * 109.47420 * 59.99817 * 1 2 3 31 31 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46869 * 294.99510 * 4 2 1 33 33 H 1.08997 * 109.47461 * 55.00292 * 4 2 1 34 34 H 0.96998 * 119.99965 * 359.97438 * 5 4 2 35 35 H 0.97004 * 120.00269 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.47431 * 264.84793 * 15 14 2 37 37 H 1.09004 * 109.46992 * 24.84740 * 15 14 2 38 38 H 1.09001 * 109.47424 * 144.84247 * 15 14 2 39 39 H 1.08005 * 120.06990 * 0.02562 * 19 18 16 40 40 H 1.08000 * 119.92239 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.85934 * 180.28025 * 21 20 19 42 42 H 1.08005 * 119.93179 * 179.76450 * 22 21 20 43 43 H 1.09005 * 109.47120 * 27.91267 * 24 23 22 44 44 H 1.09004 * 109.47198 * 147.90330 * 24 23 22 45 45 H 1.09000 * 109.46980 * 300.00716 * 25 24 23 46 46 H 1.09007 * 109.46737 * 59.99500 * 25 24 23 47 47 H 1.08998 * 109.46830 * 60.00222 * 27 26 25 48 48 H 1.09000 * 109.47030 * 180.02562 * 27 26 25 49 49 H 1.08996 * 109.46865 * 300.00157 * 27 26 25 50 50 H 1.09001 * 109.46874 * 60.00755 * 28 26 25 51 51 H 1.09005 * 109.47329 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47415 * 300.00203 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6470 -1.8426 3.0522 8 6 5.5673 -1.5381 2.1512 9 7 6.2217 -1.0455 1.1208 10 14 6.5003 -2.3718 3.5382 11 1 6.0437 -3.7791 3.6660 12 1 7.9550 -2.3479 3.2407 13 1 6.2439 -1.6507 4.8107 14 7 2.0183 -0.6905 -1.1962 15 6 1.6645 -2.0931 -1.4282 16 6 2.7931 -0.0355 -2.0834 17 8 3.1598 1.0994 -1.8486 18 6 3.1971 -0.6972 -3.3423 19 6 3.8262 -1.9429 -3.3089 20 6 4.2000 -2.5551 -4.4871 21 6 3.9479 -1.9396 -5.7005 22 6 3.3295 -0.7028 -5.7404 23 6 2.9505 -0.0794 -4.5692 24 6 2.2723 1.2655 -4.6147 25 6 3.3244 2.3712 -4.5078 26 7 2.6634 3.6822 -4.5529 27 6 3.6052 4.7585 -4.2171 28 6 2.0441 3.9147 -5.8644 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 3.9823 -0.4628 0.4315 35 1 7.1884 -1.1151 1.0819 36 1 2.4607 -2.7356 -1.0526 37 1 0.7351 -2.3242 -0.9075 38 1 1.5340 -2.2630 -2.4969 39 1 4.0191 -2.4266 -2.3627 40 1 4.6865 -3.5190 -4.4626 41 1 4.2385 -2.4252 -6.6203 42 1 3.1389 -0.2259 -6.6905 43 1 1.7316 1.3681 -5.5556 44 1 1.5727 1.3480 -3.7829 45 1 3.8651 2.2685 -3.5670 46 1 4.0240 2.2886 -5.3397 47 1 4.4281 4.7572 -4.9319 48 1 3.0898 5.7180 -4.2575 49 1 3.9964 4.5986 -3.2124 50 1 1.3003 3.1416 -6.0572 51 1 1.5614 4.8921 -5.8702 52 1 2.8104 3.8830 -6.6389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271051203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:05 Heat of formation + Delta-G solvation = 13.490970 kcal Electronic energy + Delta-G solvation = -30309.621625 eV Core-core repulsion = 26502.730571 eV Total energy + Delta-G solvation = -3806.891054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.35979 -38.47866 -37.39672 -36.19882 -33.97841 -33.03431 -32.22950 -30.65007 -29.81726 -28.76948 -27.58673 -26.61589 -25.58241 -24.72497 -23.65160 -22.50608 -21.86344 -21.04506 -20.23309 -18.79891 -17.20252 -17.01625 -16.32130 -15.86925 -15.83963 -15.24885 -15.05116 -14.78630 -14.65328 -14.45747 -14.05742 -13.62723 -13.51823 -13.19116 -13.08050 -12.92644 -12.82606 -12.49754 -12.37520 -12.32421 -12.21889 -11.95771 -11.85326 -11.77309 -11.74253 -11.47730 -11.46237 -11.39324 -10.85911 -10.80117 -10.73931 -10.57868 -10.38878 -10.03270 -9.64832 -9.35736 -8.82344 -8.78348 -8.65769 -8.30759 -8.15068 -6.84818 -5.68569 -2.97878 1.15551 1.42136 3.12441 3.37638 3.46380 3.50947 3.52133 3.79949 4.03477 4.62755 4.75927 4.85441 4.91118 5.09729 5.11663 5.14963 5.23803 5.29186 5.33451 5.43078 5.45381 5.47951 5.52188 5.60063 5.60239 5.62855 5.65308 5.66530 5.78632 5.79405 5.92014 5.96170 5.98174 6.04030 6.14487 6.16200 6.23084 6.24366 6.30001 6.42516 6.45022 6.53066 6.54386 6.61774 6.80260 6.96211 7.05832 7.08701 7.11476 7.73705 7.81302 8.48846 8.62733 9.60303 10.19961 10.55719 11.53213 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003710 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.561156 B = 7544.506163 C = 7984.010173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.101 0.899 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.241 4.241 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.928 5.928 10 Si 0.904 3.096 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.591 5.591 15 C 0.080 3.920 16 C 0.563 3.437 17 O -0.521 6.521 18 C -0.111 4.111 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.105 4.105 22 C -0.127 4.127 23 C -0.042 4.042 24 C -0.073 4.073 25 C 0.060 3.940 26 N -0.544 5.544 27 C 0.027 3.973 28 C 0.021 3.979 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.026 0.974 47 H 0.021 0.979 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 1.769 -16.810 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.577 5.577 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.213 1.213 14 N -0.324 5.324 15 C -0.063 4.063 16 C 0.350 3.650 17 O -0.397 6.397 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.145 4.145 23 C -0.044 4.044 24 C -0.110 4.110 25 C -0.068 4.068 26 N -0.267 5.267 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.234 2.311 -16.160 19.816 hybrid contribution 1.513 -0.596 -0.048 1.626 sum -9.721 1.716 -16.208 18.978 Atomic orbital electron populations 1.22068 0.95251 1.01970 1.02084 1.21387 0.93122 0.98561 0.84578 0.88097 1.20996 0.87147 0.96660 0.93608 1.42299 0.99678 1.70106 1.25119 1.19163 0.89429 1.29468 0.99143 0.91419 1.24729 0.96416 1.01705 0.97961 1.69684 1.07142 1.50729 1.30098 0.86314 0.79066 0.79209 0.81849 1.21399 1.21755 1.21343 1.47559 1.50495 1.12129 1.22200 1.21800 1.01286 0.82239 1.00956 1.18200 0.78059 0.85671 0.83035 1.90762 1.53671 1.18297 1.76965 1.19855 1.02715 0.95648 0.93188 1.21497 0.95448 0.93265 0.99375 1.21093 1.00786 1.00566 0.92166 1.21221 0.98020 0.95155 0.97905 1.20896 1.00539 0.95787 0.97299 1.19784 0.97299 0.95570 0.91713 1.20542 0.97804 0.90057 1.02637 1.22232 0.94841 0.86944 1.02764 1.61908 1.33446 1.02558 1.28821 1.22354 0.94240 0.94199 1.01342 1.22444 0.98879 1.01996 0.89454 0.91398 0.92599 0.92428 0.95569 0.96295 0.77837 0.93572 0.91834 0.91202 0.91819 0.84634 0.85643 0.86051 0.86035 0.91493 0.90123 0.87957 0.95539 0.96008 0.91683 0.90789 0.91394 0.91735 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.18 37.16 0.34 -1.70 16 2 C 0.13 2.21 2.79 -67.93 -0.19 2.02 16 3 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 4 C 0.14 2.96 5.56 -4.04 -0.02 2.94 16 5 N -0.73 -18.97 5.43 -59.91 -0.33 -19.30 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 10 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 N -0.59 -10.06 2.24 -175.06 -0.39 -10.45 16 15 C 0.08 1.14 8.29 59.85 0.50 1.63 16 16 C 0.56 10.45 5.83 -12.33 -0.07 10.38 16 17 O -0.52 -11.26 13.41 5.32 0.07 -11.19 16 18 C -0.11 -1.78 4.72 -104.97 -0.50 -2.28 16 19 C -0.08 -1.17 7.93 -39.19 -0.31 -1.48 16 20 C -0.13 -1.59 10.03 -39.64 -0.40 -1.98 16 21 C -0.10 -1.16 10.04 -39.49 -0.40 -1.55 16 22 C -0.13 -1.48 9.68 -39.64 -0.38 -1.86 16 23 C -0.04 -0.59 5.17 -104.22 -0.54 -1.13 16 24 C -0.07 -0.97 4.57 -27.89 -0.13 -1.10 16 25 C 0.06 0.86 4.75 -3.83 -0.02 0.84 16 26 N -0.54 -7.22 5.02 -251.26 -1.26 -8.49 16 27 C 0.03 0.33 9.57 60.07 0.57 0.90 16 28 C 0.02 0.21 9.32 60.06 0.56 0.77 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.68 6.66 -51.93 -0.35 0.33 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.39 10.98 7.06 -40.82 -0.29 10.69 16 35 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.06 1.00 7.29 -51.93 -0.38 0.62 16 37 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 38 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 39 H 0.14 2.23 6.79 -52.48 -0.36 1.87 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.07 0.74 6.48 -51.93 -0.34 0.41 16 44 H 0.08 1.23 6.98 -51.93 -0.36 0.87 16 45 H 0.10 1.82 6.04 -51.93 -0.31 1.51 16 46 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 47 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 49 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 50 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 51 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 52 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -33.51 407.87 -10.05 -43.57 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.77 Total: 11.11 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.23 Total: -1.05 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.25 Total: -66.32 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.51 -10.05 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271051203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.060 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds