Wall clock time and date at job start Tue Mar 31 2020 17:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47197 * 120.00567 * 2 1 3 5 5 N 1.46501 * 109.47013 * 175.00151 * 4 2 1 6 6 C 1.36940 * 119.99946 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00147 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99927 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00122 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46793 * 60.00171 * 10 8 6 12 12 H 1.48501 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47141 * 300.00129 * 10 8 6 14 14 N 1.46498 * 109.46970 * 240.00461 * 2 1 3 15 15 C 1.46498 * 120.00275 * 299.99603 * 14 2 1 16 16 C 1.34780 * 120.00177 * 119.99700 * 14 2 1 17 17 O 1.21551 * 119.99969 * 4.86361 * 16 14 2 18 18 C 1.47845 * 120.00009 * 184.85892 * 16 14 2 19 19 C 1.39589 * 120.14924 * 306.12100 * 18 16 14 20 20 C 1.37937 * 119.85511 * 179.97438 * 19 18 16 21 21 C 1.38375 * 120.14636 * 359.74200 * 20 19 18 22 22 C 1.38336 * 120.29027 * 0.51449 * 21 20 19 23 23 C 1.37983 * 120.14797 * 359.49012 * 22 21 20 24 24 C 1.50693 * 120.07725 * 180.23101 * 23 22 21 25 25 C 1.52996 * 109.47527 * 267.90755 * 24 23 22 26 26 N 1.46893 * 109.47376 * 179.97438 * 25 24 23 27 27 C 1.46909 * 110.99870 * 169.99934 * 26 25 24 28 28 C 1.46899 * 111.00088 * 293.95206 * 26 25 24 29 29 H 1.08997 * 109.47129 * 299.99084 * 1 2 3 30 30 H 1.08997 * 109.47420 * 59.99817 * 1 2 3 31 31 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46869 * 294.99510 * 4 2 1 33 33 H 1.08997 * 109.47461 * 55.00292 * 4 2 1 34 34 H 0.96998 * 119.99965 * 359.97438 * 5 4 2 35 35 H 0.97004 * 120.00269 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.47431 * 264.84793 * 15 14 2 37 37 H 1.09004 * 109.46992 * 24.84740 * 15 14 2 38 38 H 1.09001 * 109.47424 * 144.84247 * 15 14 2 39 39 H 1.08005 * 120.06990 * 0.02562 * 19 18 16 40 40 H 1.08000 * 119.92239 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.85934 * 180.28025 * 21 20 19 42 42 H 1.08005 * 119.93179 * 179.76450 * 22 21 20 43 43 H 1.09005 * 109.47120 * 27.91267 * 24 23 22 44 44 H 1.09004 * 109.47198 * 147.90330 * 24 23 22 45 45 H 1.09000 * 109.46980 * 300.00716 * 25 24 23 46 46 H 1.09007 * 109.46737 * 59.99500 * 25 24 23 47 47 H 1.08998 * 109.46830 * 60.00222 * 27 26 25 48 48 H 1.09000 * 109.47030 * 180.02562 * 27 26 25 49 49 H 1.08996 * 109.46865 * 300.00157 * 27 26 25 50 50 H 1.09001 * 109.46874 * 60.00755 * 28 26 25 51 51 H 1.09005 * 109.47329 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47415 * 300.00203 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6470 -1.8426 3.0522 8 6 5.5673 -1.5381 2.1512 9 7 6.2217 -1.0455 1.1208 10 14 6.5003 -2.3718 3.5382 11 1 6.0437 -3.7791 3.6660 12 1 7.9550 -2.3479 3.2407 13 1 6.2439 -1.6507 4.8107 14 7 2.0183 -0.6905 -1.1962 15 6 1.6645 -2.0931 -1.4282 16 6 2.7931 -0.0355 -2.0834 17 8 3.1598 1.0994 -1.8486 18 6 3.1971 -0.6972 -3.3423 19 6 3.8262 -1.9429 -3.3089 20 6 4.2000 -2.5551 -4.4871 21 6 3.9479 -1.9396 -5.7005 22 6 3.3295 -0.7028 -5.7404 23 6 2.9505 -0.0794 -4.5692 24 6 2.2723 1.2655 -4.6147 25 6 3.3244 2.3712 -4.5078 26 7 2.6634 3.6822 -4.5529 27 6 3.6052 4.7585 -4.2171 28 6 2.0441 3.9147 -5.8644 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 3.9823 -0.4628 0.4315 35 1 7.1884 -1.1151 1.0819 36 1 2.4607 -2.7356 -1.0526 37 1 0.7351 -2.3242 -0.9075 38 1 1.5340 -2.2630 -2.4969 39 1 4.0191 -2.4266 -2.3627 40 1 4.6865 -3.5190 -4.4626 41 1 4.2385 -2.4252 -6.6203 42 1 3.1389 -0.2259 -6.6905 43 1 1.7316 1.3681 -5.5556 44 1 1.5727 1.3480 -3.7829 45 1 3.8651 2.2685 -3.5670 46 1 4.0240 2.2886 -5.3397 47 1 4.4281 4.7572 -4.9319 48 1 3.0898 5.7180 -4.2575 49 1 3.9964 4.5986 -3.2124 50 1 1.3003 3.1416 -6.0572 51 1 1.5614 4.8921 -5.8702 52 1 2.8104 3.8830 -6.6389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271051203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:04 Heat of formation + Delta-G solvation = -8.247013 kcal Electronic energy + Delta-G solvation = -30310.564255 eV Core-core repulsion = 26502.730571 eV Total energy + Delta-G solvation = -3807.833684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60568 -39.67819 -38.40279 -37.72521 -35.84948 -34.09042 -33.76804 -32.27778 -31.20572 -29.81467 -28.46578 -27.86482 -27.37830 -25.79127 -24.89451 -24.30955 -22.96307 -22.23019 -21.41268 -20.16687 -19.10535 -18.45223 -17.59933 -17.02335 -17.00910 -16.67057 -16.25230 -16.17269 -15.76408 -15.66599 -15.35773 -15.29601 -14.98250 -14.75400 -14.18644 -14.07269 -13.88417 -13.81547 -13.76377 -13.64956 -13.31259 -13.24330 -13.02395 -12.99748 -12.81061 -12.75511 -12.71706 -12.53255 -12.48108 -12.43268 -12.18587 -11.89292 -11.79856 -11.73856 -11.63283 -10.98270 -10.71539 -9.83277 -9.70701 -9.53316 -9.28987 -9.00293 -7.93245 -5.23706 0.09017 0.40414 1.43706 1.47840 1.53936 1.79240 2.08514 2.54795 2.74819 3.05346 3.38862 3.53971 3.82780 3.88959 3.92469 4.07766 4.09825 4.19746 4.22434 4.28058 4.29712 4.32419 4.45439 4.46692 4.49280 4.54250 4.59848 4.65224 4.68669 4.70485 4.78852 4.82641 4.87959 4.89298 4.95628 4.95848 4.99648 5.02226 5.12647 5.17085 5.18925 5.30993 5.44571 5.46472 5.53708 5.57145 5.70872 6.00035 6.04421 6.17302 6.25525 6.46096 7.24280 7.32266 8.09220 8.32920 9.29400 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003710 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.561156 B = 7544.506163 C = 7984.010173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.130 3.870 3 H 0.067 0.933 4 C 0.143 3.857 5 N -0.742 5.742 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.273 1.273 12 H -0.298 1.298 13 H -0.279 1.279 14 N -0.592 5.592 15 C 0.084 3.916 16 C 0.553 3.447 17 O -0.566 6.566 18 C -0.135 4.135 19 C -0.096 4.096 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.052 4.052 24 C -0.062 4.062 25 C 0.068 3.932 26 N -0.564 5.564 27 C 0.028 3.972 28 C 0.022 3.978 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.084 0.916 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 0.470 -18.942 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.085 0.915 4 C 0.016 3.984 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.096 0.904 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.206 1.206 14 N -0.324 5.324 15 C -0.059 4.059 16 C 0.343 3.657 17 O -0.445 6.445 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.137 4.137 23 C -0.053 4.053 24 C -0.100 4.100 25 C -0.060 4.060 26 N -0.288 5.288 27 C -0.120 4.120 28 C -0.126 4.126 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.164 0.836 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.102 0.898 49 H 0.066 0.934 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.894 0.979 -18.269 22.383 hybrid contribution 1.969 -0.175 0.591 2.063 sum -10.925 0.804 -17.679 20.797 Atomic orbital electron populations 1.21971 0.91233 1.03625 1.03153 1.21276 0.96014 0.96319 0.83702 0.91501 1.21197 0.84218 0.97725 0.95267 1.42520 1.01968 1.69826 1.24118 1.19623 0.90005 1.28532 0.99591 0.90424 1.25600 0.97477 1.03097 1.00570 1.69889 1.06835 1.52809 1.32422 0.85193 0.77011 0.78659 0.78762 1.19915 1.22394 1.20551 1.47688 1.49978 1.13119 1.21572 1.21887 1.01365 0.80115 1.02500 1.18785 0.77472 0.85344 0.84129 1.90734 1.55363 1.20342 1.78107 1.19778 1.04754 0.96440 0.92805 1.21361 0.97048 0.93447 0.99592 1.21363 1.00167 1.01278 0.91715 1.21660 0.96026 0.94593 0.98637 1.21285 0.99098 0.95806 0.97526 1.19951 0.97776 0.95766 0.91799 1.20443 0.97036 0.89558 1.02932 1.22017 0.95141 0.88224 1.00604 1.61894 1.33663 1.02140 1.31087 1.22335 0.94712 0.94845 1.00100 1.22507 0.99100 1.03080 0.87911 0.90000 0.91892 0.90369 0.95332 0.94670 0.79691 0.94298 0.94066 0.88761 0.89955 0.87310 0.83601 0.82076 0.82685 0.88526 0.92744 0.92439 0.94769 0.95198 0.89752 0.93373 0.90496 0.90440 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.18 71.98 0.66 -2.90 16 2 C 0.13 4.71 2.79 44.99 0.13 4.84 16 3 H 0.07 2.88 6.91 -2.39 -0.02 2.86 16 4 C 0.14 5.97 5.56 86.38 0.48 6.45 16 5 N -0.74 -40.26 5.43 -343.46 -1.87 -42.12 16 6 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 7 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 8 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 9 N -0.97 -62.73 13.06 21.65 0.28 -62.45 16 10 Si 0.98 47.68 29.55 68.60 2.03 49.70 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 N -0.59 -21.09 2.24 -826.03 -1.85 -22.94 16 15 C 0.08 2.39 8.29 127.77 1.06 3.45 16 16 C 0.55 22.07 5.83 86.79 0.51 22.58 16 17 O -0.57 -26.89 13.41 -3.88 -0.05 -26.94 16 18 C -0.13 -4.50 4.72 -20.09 -0.09 -4.59 16 19 C -0.10 -2.99 7.93 22.52 0.18 -2.81 16 20 C -0.13 -2.97 10.03 22.23 0.22 -2.74 16 21 C -0.09 -1.69 10.04 22.33 0.22 -1.47 16 22 C -0.12 -2.41 9.68 22.23 0.22 -2.19 16 23 C -0.05 -1.41 5.17 -19.61 -0.10 -1.51 16 24 C -0.06 -1.65 4.57 29.84 0.14 -1.51 16 25 C 0.07 2.01 4.75 86.30 0.41 2.42 16 26 N -0.56 -15.05 5.02 -948.84 -4.76 -19.81 16 27 C 0.03 0.70 9.57 127.69 1.22 1.92 16 28 C 0.02 0.40 9.32 127.69 1.19 1.59 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.65 6.66 -2.38 -0.02 1.63 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 34 H 0.37 22.40 7.06 -92.71 -0.65 21.74 16 35 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.04 1.36 7.29 -2.39 -0.02 1.34 16 37 H 0.09 2.17 6.44 -2.38 -0.02 2.15 16 38 H 0.08 2.03 6.43 -2.39 -0.02 2.02 16 39 H 0.11 3.90 6.79 -2.91 -0.02 3.88 16 40 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.10 1.92 6.48 -2.38 -0.02 1.91 16 44 H 0.05 1.73 6.98 -2.39 -0.02 1.71 16 45 H 0.06 2.24 6.04 -2.39 -0.01 2.23 16 46 H 0.03 0.93 8.12 -2.38 -0.02 0.91 16 47 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 48 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 49 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 50 H 0.08 1.28 6.47 -2.39 -0.02 1.26 16 51 H 0.08 1.24 8.12 -2.38 -0.02 1.22 16 52 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -78.12 407.87 1.76 -76.36 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: 0.25 Total: 42.17 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 7.74 Total: 6.04 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -8.20 Total: -147.32 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Total: -78.12 1.76 -76.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271051203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.108 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds