Wall clock time and date at job start Tue Mar 31 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.47022 * 2 1 4 4 C 1.36440 * 124.85116 * 264.97979 * 3 2 1 5 5 C 1.34486 * 108.86009 * 180.02562 * 4 3 2 6 6 C 1.46689 * 106.32851 * 359.97438 * 5 4 3 7 7 C 1.47256 * 126.94275 * 180.02562 * 6 5 4 8 8 O 1.21627 * 120.00282 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99913 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99811 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.47068 * 34.99431 * 10 9 7 12 12 C 1.52999 * 109.46691 * 155.00013 * 10 9 7 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 299.99539 * 13 12 10 15 15 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 16 16 C 1.52996 * 109.47131 * 179.97438 * 14 13 12 17 17 N 1.46495 * 109.47172 * 175.00143 * 16 14 13 18 18 C 1.36936 * 120.00085 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00248 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00469 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47033 * 59.99620 * 22 20 18 24 24 H 1.48494 * 109.47726 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46984 * 300.00101 * 22 20 18 26 26 C 1.53002 * 109.46817 * 60.00361 * 14 13 12 27 27 C 1.52996 * 109.46972 * 299.99733 * 26 14 13 28 28 C 1.34655 * 124.84664 * 85.31052 * 3 2 1 29 29 C 1.50697 * 125.80663 * 0.02562 * 28 3 2 30 30 H 1.08995 * 109.47251 * 300.00048 * 1 2 3 31 31 H 1.09002 * 109.47107 * 59.99998 * 1 2 3 32 32 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46867 * 240.00321 * 2 1 3 34 34 H 1.08994 * 109.46846 * 119.99860 * 2 1 3 35 35 H 1.08011 * 125.57197 * 359.97438 * 4 3 2 36 36 H 1.07995 * 126.83516 * 180.02562 * 5 4 3 37 37 H 0.97000 * 119.99910 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47839 * 59.99891 * 12 10 9 39 39 H 1.09000 * 109.47160 * 299.99453 * 12 10 9 40 40 H 1.09001 * 109.46801 * 59.99811 * 13 12 10 41 41 H 1.09001 * 109.46998 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.47315 * 295.00431 * 16 14 13 43 43 H 1.09007 * 109.46739 * 55.00050 * 16 14 13 44 44 H 0.97003 * 120.00137 * 359.97438 * 17 16 14 45 45 H 0.96997 * 120.00185 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.47407 * 60.00219 * 26 14 13 47 47 H 1.09000 * 109.46986 * 179.97438 * 26 14 13 48 48 H 1.09001 * 109.46993 * 180.02562 * 27 26 14 49 49 H 1.09000 * 109.47380 * 299.99696 * 27 26 14 50 50 H 1.08994 * 109.47613 * 270.19393 * 29 28 3 51 51 H 1.08998 * 109.46773 * 30.19709 * 29 28 3 52 52 H 1.09002 * 109.46771 * 150.18839 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7715 3.3133 -0.7463 6 6 2.6531 3.3643 0.7150 7 6 2.9746 4.5044 1.5897 8 8 2.8286 4.4077 2.7933 9 7 3.4307 5.6552 1.0565 10 6 3.7511 6.7894 1.9268 11 1 4.1614 6.4212 2.8671 12 6 4.7810 7.6863 1.2372 13 6 5.1151 8.8711 2.1459 14 6 3.8435 9.6751 2.4238 15 1 3.4333 10.0429 1.4833 16 6 4.1774 10.8595 3.3329 17 7 2.9867 11.6960 3.5024 18 6 3.0457 12.8215 4.2801 19 1 3.9699 13.0924 4.7689 20 6 1.9174 13.6139 4.4411 21 7 0.7909 13.2836 3.8459 22 14 1.9976 15.1489 5.5026 23 1 3.0141 16.0801 4.9503 24 1 0.6702 15.8145 5.5116 25 1 2.3726 14.7727 6.8894 26 6 2.8135 8.7781 3.1134 27 6 2.4794 7.5934 2.2048 28 6 2.1896 2.1368 1.1014 29 6 1.9141 1.7047 2.5185 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3343 1.7127 -2.1291 36 1 3.1119 4.1056 -1.3963 37 1 3.5476 5.7322 0.0966 38 1 4.3707 8.0544 0.2969 39 1 5.6868 7.1134 1.0388 40 1 5.5253 8.5033 3.0864 41 1 5.8492 9.5099 1.6548 42 1 4.5036 10.4905 4.3053 43 1 4.9751 11.4499 2.8821 44 1 2.1567 11.4530 3.0631 45 1 0.0025 13.8375 3.9581 46 1 3.2237 8.4104 4.0539 47 1 1.9077 9.3510 3.3118 48 1 1.7453 6.9546 2.6958 49 1 2.0691 7.9611 1.2643 50 1 0.8810 1.9384 2.7754 51 1 2.0771 0.6308 2.6090 52 1 2.5853 2.2323 3.1962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272755664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:24 Heat of formation + Delta-G solvation = -27.709479 kcal Electronic energy + Delta-G solvation = -28390.345072 eV Core-core repulsion = 24581.667433 eV Total energy + Delta-G solvation = -3808.677640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33062 -40.71854 -39.20677 -36.66271 -35.15643 -34.85153 -33.06944 -32.50826 -31.71501 -30.91891 -29.85363 -27.45930 -26.62342 -24.97885 -24.26599 -23.62159 -22.91283 -21.88780 -21.13379 -20.68880 -19.77668 -19.13475 -18.33195 -17.18131 -16.86008 -16.65226 -16.37404 -15.86726 -15.65347 -15.50315 -15.33889 -15.26791 -14.82124 -14.64300 -14.55428 -14.21135 -14.08878 -13.78463 -13.74756 -13.62623 -13.45086 -13.15646 -13.06825 -12.98877 -12.84341 -12.75532 -12.71527 -12.40690 -12.19908 -12.10966 -12.04075 -12.00558 -11.88128 -11.45326 -11.23413 -11.12743 -10.88789 -10.72282 -9.99797 -9.49327 -9.06864 -8.97034 -7.93753 -5.22163 0.78248 1.46338 1.50277 1.55696 1.56310 1.87951 2.47510 2.57032 2.63281 3.39027 3.72925 3.77187 3.81705 3.83047 3.95105 4.03945 4.09702 4.12629 4.17392 4.21151 4.36615 4.42496 4.45573 4.49369 4.55659 4.59660 4.61220 4.62179 4.67401 4.82227 4.86014 4.86543 4.96288 5.00752 5.08801 5.08837 5.11709 5.15558 5.21892 5.23073 5.25498 5.30555 5.35640 5.47567 5.54824 5.61514 5.67157 5.84634 6.15573 6.28709 6.40280 6.76984 7.34448 7.44545 8.12625 8.35809 9.29829 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.001884 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.220645 B =14854.609302 C =15351.693696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.437 5.437 4 C -0.010 4.010 5 C -0.181 4.181 6 C -0.271 4.271 7 C 0.583 3.417 8 O -0.594 6.594 9 N -0.711 5.711 10 C 0.155 3.845 11 H 0.066 0.934 12 C -0.111 4.111 13 C -0.101 4.101 14 C -0.083 4.083 15 H 0.066 0.934 16 C 0.153 3.847 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.976 3.024 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.279 1.279 26 C -0.099 4.099 27 C -0.115 4.115 28 C 0.093 3.907 29 C -0.089 4.089 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.200 0.800 36 H 0.162 0.838 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.014 0.986 43 H 0.023 0.977 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -32.292 -15.085 36.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.113 5.113 4 C -0.136 4.136 5 C -0.204 4.204 6 C -0.281 4.281 7 C 0.374 3.626 8 O -0.476 6.476 9 N -0.361 5.361 10 C 0.050 3.950 11 H 0.084 0.916 12 C -0.149 4.149 13 C -0.139 4.139 14 C -0.102 4.102 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.387 5.387 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.805 3.195 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.205 1.205 26 C -0.138 4.138 27 C -0.154 4.154 28 C -0.026 4.026 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.217 0.783 36 H 0.179 0.821 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.106 0.894 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.261 -32.586 -14.185 35.927 hybrid contribution -0.756 1.260 0.358 1.512 sum 4.506 -31.326 -13.827 34.537 Atomic orbital electron populations 1.22150 0.93938 1.04129 1.02323 1.22217 0.95854 0.78743 1.06307 1.44017 1.49206 1.13009 1.05111 1.22248 1.06135 0.92768 0.92446 1.22260 1.07484 0.98653 0.92021 1.20235 1.18208 0.94842 0.94792 1.17804 0.75501 0.82565 0.86768 1.90710 1.56159 1.83892 1.16869 1.45732 1.66985 1.12132 1.11244 1.20841 0.94630 0.85407 0.94122 0.91573 1.21710 0.98526 0.95578 0.99051 1.21425 0.96080 0.96170 1.00233 1.21238 0.96579 0.94228 0.98125 0.91521 1.20885 0.89096 0.90931 0.96368 1.42605 1.10112 1.27289 1.58727 1.19643 0.96181 1.00772 1.21273 0.90746 1.25606 0.95604 1.02915 1.02970 1.69822 1.01364 1.41407 1.49581 0.85175 0.76333 0.79368 0.78669 1.20174 1.22080 1.20538 1.21356 0.98709 0.95539 0.98175 1.21791 0.97776 0.96075 0.99771 1.20448 1.00809 0.90959 0.90362 1.20478 1.02848 1.02147 0.89187 0.93386 0.92275 0.88519 0.86292 0.88249 0.78278 0.82051 0.75221 0.89998 0.89326 0.91720 0.89858 0.96774 0.95874 0.79422 0.94041 0.93027 0.94116 0.94005 0.91382 0.90910 0.89395 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 71.98 0.74 -0.24 16 2 C 0.09 0.50 6.46 86.38 0.56 1.06 16 3 N -0.44 -5.85 2.69 -509.90 -1.37 -7.22 16 4 C -0.01 -0.12 11.32 83.12 0.94 0.82 16 5 C -0.18 -2.93 10.56 23.62 0.25 -2.68 16 6 C -0.27 -6.31 6.29 -19.04 -0.12 -6.43 16 7 C 0.58 16.58 7.77 86.61 0.67 17.25 16 8 O -0.59 -21.36 14.48 -4.12 -0.06 -21.42 16 9 N -0.71 -16.49 5.07 -445.95 -2.26 -18.75 16 10 C 0.15 3.99 2.46 44.99 0.11 4.10 16 11 H 0.07 2.01 7.58 -2.39 -0.02 2.00 16 12 C -0.11 -2.25 5.39 30.60 0.16 -2.08 16 13 C -0.10 -2.48 5.20 30.60 0.16 -2.32 16 14 C -0.08 -2.76 2.23 -10.79 -0.02 -2.79 16 15 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 16 C 0.15 6.46 5.65 86.38 0.49 6.95 16 17 N -0.74 -39.90 5.33 -343.46 -1.83 -41.73 16 18 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 22 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 C -0.10 -3.54 5.08 30.59 0.16 -3.38 16 27 C -0.12 -3.55 5.49 30.59 0.17 -3.38 16 28 C 0.09 1.87 6.89 41.78 0.29 2.16 16 29 C -0.09 -1.68 9.51 71.23 0.68 -1.00 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.12 0.09 8.11 -2.39 -0.02 0.07 16 34 H 0.10 0.40 7.04 -2.39 -0.02 0.38 16 35 H 0.20 0.89 8.06 -2.90 -0.02 0.87 16 36 H 0.16 1.84 7.69 -2.91 -0.02 1.82 16 37 H 0.41 6.98 7.72 -92.71 -0.72 6.26 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.37 21.25 6.85 -92.71 -0.64 20.62 16 45 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.04 1.71 7.18 -2.39 -0.02 1.70 16 48 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.09 1.07 7.02 -2.39 -0.02 1.05 16 52 H 0.07 1.83 6.47 -2.39 -0.02 1.82 16 Total: -1.00 -78.77 411.39 2.88 -75.89 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.45 Total: 34.63 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 6.53 Total: -9.81 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -5.18 Total: -129.09 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -78.77 2.88 -75.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272755664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.182 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds