Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47234 * 2 1 4 4 C 1.46898 * 111.00362 * 169.99927 * 3 2 1 5 5 C 1.46896 * 111.00150 * 293.95671 * 3 2 1 6 6 H 1.09005 * 109.46735 * 316.78143 * 5 3 2 7 7 C 1.50698 * 109.47577 * 76.77622 * 5 3 2 8 8 O 1.21281 * 119.99629 * 29.55530 * 7 5 3 9 9 N 1.34772 * 120.00191 * 209.55258 * 7 5 3 10 10 C 1.46511 * 119.99852 * 180.27334 * 9 7 5 11 11 H 1.08998 * 109.47012 * 34.72779 * 10 9 7 12 12 C 1.53001 * 109.47119 * 274.72818 * 10 9 7 13 13 C 1.53002 * 109.46719 * 154.72522 * 10 9 7 14 14 C 1.52995 * 109.47357 * 295.00055 * 13 10 9 15 15 N 1.46498 * 109.47370 * 180.02562 * 14 13 10 16 16 C 1.36940 * 120.00427 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99342 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00241 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99858 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47217 * 59.99953 * 20 18 16 22 22 H 1.48506 * 109.46745 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47022 * 299.99398 * 20 18 16 24 24 C 1.50699 * 109.47238 * 196.78125 * 5 3 2 25 25 C 1.38227 * 120.00155 * 311.84522 * 24 5 3 26 26 C 1.38237 * 120.00119 * 179.78891 * 25 24 5 27 27 C 1.38234 * 120.00073 * 0.44498 * 26 25 24 28 28 C 1.38233 * 119.99960 * 359.81127 * 27 26 25 29 29 C 1.38239 * 119.99920 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47103 * 299.99662 * 1 2 3 31 31 H 1.08994 * 109.47331 * 60.00123 * 1 2 3 32 32 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47459 * 239.99793 * 2 1 3 34 34 H 1.09008 * 109.47290 * 119.99691 * 2 1 3 35 35 H 1.09007 * 109.47023 * 190.57341 * 4 3 2 36 36 H 1.09003 * 109.46693 * 310.56681 * 4 3 2 37 37 H 1.08999 * 109.47147 * 70.56815 * 4 3 2 38 38 H 0.96997 * 120.00440 * 0.02562 * 9 7 5 39 39 H 1.09005 * 109.46795 * 299.99802 * 12 10 9 40 40 H 1.08989 * 109.47297 * 59.99867 * 12 10 9 41 41 H 1.09002 * 109.46406 * 180.02562 * 12 10 9 42 42 H 1.08996 * 109.47228 * 55.00709 * 13 10 9 43 43 H 1.09004 * 109.46611 * 175.00363 * 13 10 9 44 44 H 1.09004 * 109.47160 * 300.00580 * 14 13 10 45 45 H 1.09001 * 109.47399 * 59.99894 * 14 13 10 46 46 H 0.96998 * 119.99862 * 0.02562 * 15 14 13 47 47 H 0.96996 * 120.00025 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.00153 * 0.02562 * 25 24 5 49 49 H 1.08003 * 119.99917 * 180.27924 * 26 25 24 50 50 H 1.07996 * 120.00016 * 179.83479 * 27 26 25 51 51 H 1.08000 * 120.00313 * 180.02562 * 28 27 26 52 52 H 1.07997 * 119.99823 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4311 0.2382 5 6 1.6702 2.0669 -1.2532 6 1 1.8542 1.3983 -2.0942 7 6 0.2132 2.4512 -1.2267 8 8 -0.3307 2.6939 -0.1703 9 7 -0.4852 2.5253 -2.3770 10 6 -1.9001 2.9047 -2.3517 11 1 -2.0664 3.6347 -1.5595 12 6 -2.7563 1.6640 -2.0898 13 6 -2.2879 3.5171 -3.6991 14 6 -1.5216 4.8253 -3.9044 15 7 -1.8935 5.4119 -5.1942 16 6 -1.3312 6.5940 -5.5965 17 1 -0.6133 7.0936 -4.9629 18 6 -1.6839 7.1501 -6.8184 19 7 -2.5585 6.5409 -7.5907 20 14 -0.9164 8.7622 -7.3673 21 1 0.5574 8.6034 -7.4574 22 1 -1.4555 9.1391 -8.6987 23 1 -1.2404 9.8253 -6.3825 24 6 2.5140 3.3065 -1.4029 25 6 2.6406 4.1882 -0.3459 26 6 3.4182 5.3230 -0.4817 27 6 4.0618 5.5808 -1.6776 28 6 3.9311 4.7018 -2.7364 29 6 3.1570 3.5646 -2.5991 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.7741 2.4616 0.4199 36 1 3.7133 0.8208 1.1075 37 1 3.9929 1.0453 -0.6360 38 1 -0.0503 2.3309 -3.2219 39 1 -2.5899 0.9341 -2.8821 40 1 -2.4799 1.2278 -1.1300 41 1 -3.8089 1.9464 -2.0715 42 1 -2.0391 2.8207 -4.4998 43 1 -3.3593 3.7177 -3.7120 44 1 -1.7706 5.5217 -3.1036 45 1 -0.4503 4.6247 -3.8913 46 1 -2.5385 4.9634 -5.7631 47 1 -2.8047 6.9293 -8.4448 48 1 2.1350 3.9886 0.5874 49 1 3.5206 6.0096 0.3457 50 1 4.6672 6.4687 -1.7846 51 1 4.4342 4.9029 -3.6706 52 1 3.0552 2.8777 -3.4262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273112053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = 10.322680 kcal Electronic energy + Delta-G solvation = -30043.318928 eV Core-core repulsion = 26236.290486 eV Total energy + Delta-G solvation = -3807.028441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75777 -38.96740 -37.39163 -36.14405 -34.28604 -32.71180 -31.81383 -31.06835 -30.61043 -30.15345 -27.88893 -27.72231 -24.71823 -23.94787 -22.76011 -22.30366 -21.96338 -21.32688 -20.45832 -19.94897 -17.48918 -17.12891 -16.93445 -16.32388 -16.00557 -15.51963 -14.86128 -14.72260 -14.59622 -14.36972 -14.25737 -13.77460 -13.68617 -13.47901 -13.34289 -13.28854 -13.13461 -12.86970 -12.80042 -12.63053 -12.35050 -12.23667 -11.82710 -11.69201 -11.59040 -11.23618 -11.15644 -11.08973 -10.99195 -10.89223 -10.74951 -10.59299 -10.54185 -10.05139 -9.78387 -9.67342 -8.94852 -8.91763 -8.81734 -8.70695 -8.52737 -6.90522 -5.75197 -3.03614 1.19834 1.37553 2.76444 3.06740 3.44743 3.48923 3.50198 3.61606 3.96200 4.47787 4.58837 4.70814 4.76964 4.83585 4.97796 5.00853 5.02654 5.06935 5.11847 5.22893 5.29510 5.33764 5.37130 5.39845 5.44132 5.56607 5.57137 5.65255 5.73838 5.74778 5.78774 5.85458 5.86526 5.97254 6.01794 6.07504 6.22606 6.26899 6.32283 6.37610 6.39239 6.42612 6.48887 6.62543 6.74067 6.81449 6.86038 6.91489 6.93647 7.65954 7.71670 8.39978 8.44099 9.54971 10.13000 10.47888 11.47792 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.003648 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.489608 B = 7672.645978 C = 9716.473905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 N -0.517 5.517 4 C 0.022 3.978 5 C 0.111 3.889 6 H 0.065 0.935 7 C 0.530 3.470 8 O -0.518 6.518 9 N -0.722 5.722 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.135 4.135 14 C 0.155 3.845 15 N -0.734 5.734 16 C -0.237 4.237 17 H 0.068 0.932 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.089 4.089 25 C -0.086 4.086 26 C -0.126 4.126 27 C -0.112 4.112 28 C -0.118 4.118 29 C -0.105 4.105 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.398 0.602 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.133 0.867 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.062 -14.154 14.935 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.126 4.126 5 C -0.001 4.001 6 H 0.083 0.917 7 C 0.315 3.685 8 O -0.393 6.393 9 N -0.375 5.375 10 C 0.043 3.957 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.173 4.173 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.369 4.369 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.090 4.090 25 C -0.104 4.104 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.136 4.136 29 C -0.124 4.124 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.232 0.768 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.151 0.849 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.142 0.858 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.509 -13.588 16.096 24.004 hybrid contribution 0.787 0.292 -1.809 1.995 sum 12.296 -13.296 14.287 23.067 Atomic orbital electron populations 1.22073 0.94406 1.01034 1.03676 1.22181 0.96714 0.87920 1.00725 1.61729 1.14312 1.15639 1.32462 1.22526 0.86467 1.03363 1.00214 1.20509 0.92773 0.94194 0.92626 0.91699 1.19945 0.87347 0.77094 0.84127 1.90685 1.70407 1.48166 1.30038 1.46154 1.11681 1.70687 1.08968 1.20937 0.79403 0.96330 0.99013 0.89438 1.22181 0.99983 0.98050 1.01752 1.22060 1.01725 0.98300 0.95192 1.20612 0.95986 0.91314 0.89299 1.42359 1.52095 1.25577 1.17750 1.19184 1.18807 0.98021 1.00852 0.91359 1.24722 0.99810 0.99136 0.97313 1.69648 1.36258 1.40155 1.12340 0.86279 0.78640 0.83717 0.77652 1.21295 1.21668 1.21251 1.19320 0.98938 0.95785 0.94919 1.21091 0.97170 0.93113 0.99009 1.21176 0.97907 0.97368 0.97903 1.21213 0.99360 0.99090 0.93355 1.21105 0.99169 0.94436 0.98913 1.21018 0.97018 0.97965 0.96405 0.90756 0.92304 0.92879 0.95017 0.90394 0.90268 0.91311 0.95532 0.76783 0.92655 0.92268 0.91607 0.91481 0.90345 0.96550 0.96337 0.78364 0.93505 0.84940 0.85988 0.86076 0.85805 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.57 37.16 0.32 -1.32 16 2 C 0.05 0.50 5.65 -3.83 -0.02 0.47 16 3 N -0.52 -5.62 4.11 -237.70 -0.98 -6.59 16 4 C 0.02 0.20 8.70 60.06 0.52 0.72 16 5 C 0.11 1.27 2.12 -70.02 -0.15 1.12 16 6 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 7 C 0.53 7.21 3.84 -10.99 -0.04 7.17 16 8 O -0.52 -8.56 14.56 5.56 0.08 -8.48 16 9 N -0.72 -9.26 4.46 -53.80 -0.24 -9.50 16 10 C 0.15 2.03 2.58 -67.92 -0.18 1.85 16 11 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 12 C -0.16 -1.89 9.49 37.16 0.35 -1.53 16 13 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 14 C 0.16 3.18 6.15 -4.05 -0.02 3.15 16 15 N -0.73 -18.81 5.60 -59.91 -0.34 -19.15 16 16 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.94 -28.43 13.06 55.49 0.72 -27.71 16 20 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.09 -1.06 3.62 -104.63 -0.38 -1.44 16 25 C -0.09 -1.05 7.15 -39.59 -0.28 -1.34 16 26 C -0.13 -1.42 10.05 -39.58 -0.40 -1.81 16 27 C -0.11 -1.24 10.05 -39.58 -0.40 -1.63 16 28 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 29 C -0.11 -1.21 9.67 -39.58 -0.38 -1.59 16 30 H 0.07 0.94 7.57 -51.93 -0.39 0.54 16 31 H 0.06 0.69 4.52 -51.93 -0.23 0.46 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.27 7.95 -51.93 -0.41 -0.14 16 34 H 0.08 0.64 7.92 -51.92 -0.41 0.23 16 35 H 0.08 0.77 5.46 -51.93 -0.28 0.48 16 36 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 37 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 38 H 0.40 4.60 8.60 -40.82 -0.35 4.25 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.72 7.56 -51.94 -0.39 0.33 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.39 7.75 -51.93 -0.40 -0.02 16 46 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.13 1.73 7.97 -52.48 -0.42 1.32 16 49 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 52 H 0.12 1.18 7.98 -52.49 -0.42 0.76 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -32.92 412.06 -10.40 -43.32 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -9.01 Total: 11.87 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.83 Total: -7.57 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.83 Total: -62.96 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.92 -10.40 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273112053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.641 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds