Wall clock time and date at job start Tue Mar 31 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47234 * 2 1 4 4 C 1.46898 * 111.00362 * 169.99927 * 3 2 1 5 5 C 1.46896 * 111.00150 * 293.95671 * 3 2 1 6 6 H 1.09005 * 109.46735 * 316.78143 * 5 3 2 7 7 C 1.50698 * 109.47577 * 76.77622 * 5 3 2 8 8 O 1.21281 * 119.99629 * 29.55530 * 7 5 3 9 9 N 1.34772 * 120.00191 * 209.55258 * 7 5 3 10 10 C 1.46511 * 119.99852 * 180.27334 * 9 7 5 11 11 H 1.08998 * 109.47012 * 34.72779 * 10 9 7 12 12 C 1.53001 * 109.47119 * 274.72818 * 10 9 7 13 13 C 1.53002 * 109.46719 * 154.72522 * 10 9 7 14 14 C 1.52995 * 109.47357 * 295.00055 * 13 10 9 15 15 N 1.46498 * 109.47370 * 180.02562 * 14 13 10 16 16 C 1.36940 * 120.00427 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99342 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00241 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99858 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47217 * 59.99953 * 20 18 16 22 22 H 1.48506 * 109.46745 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47022 * 299.99398 * 20 18 16 24 24 C 1.50699 * 109.47238 * 196.78125 * 5 3 2 25 25 C 1.38227 * 120.00155 * 311.84522 * 24 5 3 26 26 C 1.38237 * 120.00119 * 179.78891 * 25 24 5 27 27 C 1.38234 * 120.00073 * 0.44498 * 26 25 24 28 28 C 1.38233 * 119.99960 * 359.81127 * 27 26 25 29 29 C 1.38239 * 119.99920 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47103 * 299.99662 * 1 2 3 31 31 H 1.08994 * 109.47331 * 60.00123 * 1 2 3 32 32 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47459 * 239.99793 * 2 1 3 34 34 H 1.09008 * 109.47290 * 119.99691 * 2 1 3 35 35 H 1.09007 * 109.47023 * 190.57341 * 4 3 2 36 36 H 1.09003 * 109.46693 * 310.56681 * 4 3 2 37 37 H 1.08999 * 109.47147 * 70.56815 * 4 3 2 38 38 H 0.96997 * 120.00440 * 0.02562 * 9 7 5 39 39 H 1.09005 * 109.46795 * 299.99802 * 12 10 9 40 40 H 1.08989 * 109.47297 * 59.99867 * 12 10 9 41 41 H 1.09002 * 109.46406 * 180.02562 * 12 10 9 42 42 H 1.08996 * 109.47228 * 55.00709 * 13 10 9 43 43 H 1.09004 * 109.46611 * 175.00363 * 13 10 9 44 44 H 1.09004 * 109.47160 * 300.00580 * 14 13 10 45 45 H 1.09001 * 109.47399 * 59.99894 * 14 13 10 46 46 H 0.96998 * 119.99862 * 0.02562 * 15 14 13 47 47 H 0.96996 * 120.00025 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.00153 * 0.02562 * 25 24 5 49 49 H 1.08003 * 119.99917 * 180.27924 * 26 25 24 50 50 H 1.07996 * 120.00016 * 179.83479 * 27 26 25 51 51 H 1.08000 * 120.00313 * 180.02562 * 28 27 26 52 52 H 1.07997 * 119.99823 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4311 0.2382 5 6 1.6702 2.0669 -1.2532 6 1 1.8542 1.3983 -2.0942 7 6 0.2132 2.4512 -1.2267 8 8 -0.3307 2.6939 -0.1703 9 7 -0.4852 2.5253 -2.3770 10 6 -1.9001 2.9047 -2.3517 11 1 -2.0664 3.6347 -1.5595 12 6 -2.7563 1.6640 -2.0898 13 6 -2.2879 3.5171 -3.6991 14 6 -1.5216 4.8253 -3.9044 15 7 -1.8935 5.4119 -5.1942 16 6 -1.3312 6.5940 -5.5965 17 1 -0.6133 7.0936 -4.9629 18 6 -1.6839 7.1501 -6.8184 19 7 -2.5585 6.5409 -7.5907 20 14 -0.9164 8.7622 -7.3673 21 1 0.5574 8.6034 -7.4574 22 1 -1.4555 9.1391 -8.6987 23 1 -1.2404 9.8253 -6.3825 24 6 2.5140 3.3065 -1.4029 25 6 2.6406 4.1882 -0.3459 26 6 3.4182 5.3230 -0.4817 27 6 4.0618 5.5808 -1.6776 28 6 3.9311 4.7018 -2.7364 29 6 3.1570 3.5646 -2.5991 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.7741 2.4616 0.4199 36 1 3.7133 0.8208 1.1075 37 1 3.9929 1.0453 -0.6360 38 1 -0.0503 2.3309 -3.2219 39 1 -2.5899 0.9341 -2.8821 40 1 -2.4799 1.2278 -1.1300 41 1 -3.8089 1.9464 -2.0715 42 1 -2.0391 2.8207 -4.4998 43 1 -3.3593 3.7177 -3.7120 44 1 -1.7706 5.5217 -3.1036 45 1 -0.4503 4.6247 -3.8913 46 1 -2.5385 4.9634 -5.7631 47 1 -2.8047 6.9293 -8.4448 48 1 2.1350 3.9886 0.5874 49 1 3.5206 6.0096 0.3457 50 1 4.6672 6.4687 -1.7846 51 1 4.4342 4.9029 -3.6706 52 1 3.0552 2.8777 -3.4262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273112053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:04 Heat of formation + Delta-G solvation = -10.630744 kcal Electronic energy + Delta-G solvation = -30044.227536 eV Core-core repulsion = 26236.290486 eV Total energy + Delta-G solvation = -3807.937050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72226 -39.94388 -38.35457 -37.42364 -36.02987 -33.76002 -33.32953 -32.16058 -31.79220 -31.00570 -29.44384 -28.61188 -25.93694 -25.40119 -23.62695 -23.56760 -22.87563 -22.72041 -21.62071 -20.91747 -19.22285 -18.31403 -17.97129 -17.40929 -16.87445 -16.68851 -16.44261 -15.74678 -15.62452 -15.52648 -15.33171 -15.19180 -15.03547 -14.92397 -14.52762 -14.27108 -14.18525 -13.97858 -13.75743 -13.50778 -13.49870 -13.08647 -13.02478 -12.87205 -12.82711 -12.49955 -12.44688 -12.37162 -12.28519 -12.04493 -11.98332 -11.94744 -11.91732 -11.71425 -11.61496 -10.95150 -10.84180 -10.00182 -9.81898 -9.61702 -9.30461 -9.01539 -7.96271 -5.25352 0.31729 0.48907 1.46315 1.49209 1.55532 1.72254 2.08846 2.55042 2.75882 3.09536 3.37126 3.59569 3.63569 3.86248 3.92251 4.03956 4.08273 4.15930 4.17152 4.20871 4.26864 4.29376 4.40020 4.50086 4.56752 4.58974 4.60083 4.65845 4.67396 4.70577 4.76818 4.87271 4.89046 5.00571 5.02428 5.04006 5.05247 5.14708 5.22806 5.26832 5.32747 5.39997 5.47336 5.52748 5.56245 5.61579 5.62694 5.92403 6.05435 6.09712 6.26148 6.63628 7.32760 7.35392 8.07304 8.32361 9.26831 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.003648 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.489608 B = 7672.645978 C = 9716.473905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.534 5.534 4 C 0.026 3.974 5 C 0.116 3.884 6 H 0.082 0.918 7 C 0.531 3.469 8 O -0.552 6.552 9 N -0.718 5.718 10 C 0.156 3.844 11 H 0.064 0.936 12 C -0.152 4.152 13 C -0.118 4.118 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.249 4.249 17 H 0.068 0.932 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.095 4.095 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.119 4.119 28 C -0.129 4.129 29 C -0.114 4.114 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.406 0.594 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.001 0.999 45 H 0.021 0.979 46 H 0.376 0.624 47 H 0.253 0.747 48 H 0.118 0.882 49 H 0.136 0.864 50 H 0.140 0.860 51 H 0.139 0.861 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 -14.888 14.621 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 N -0.259 5.259 4 C -0.122 4.122 5 C 0.005 3.995 6 H 0.100 0.900 7 C 0.317 3.683 8 O -0.429 6.429 9 N -0.371 5.371 10 C 0.051 3.949 11 H 0.082 0.918 12 C -0.210 4.210 13 C -0.156 4.156 14 C 0.031 3.969 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.086 0.914 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.096 4.096 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.132 4.132 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.242 0.758 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.019 0.981 45 H 0.039 0.961 46 H 0.208 0.792 47 H 0.061 0.939 48 H 0.136 0.864 49 H 0.154 0.846 50 H 0.158 0.842 51 H 0.157 0.843 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.820 -14.339 15.802 24.893 hybrid contribution 0.394 0.524 -1.641 1.767 sum 13.215 -13.815 14.161 23.791 Atomic orbital electron populations 1.22001 0.95411 1.01521 1.01760 1.22229 0.95782 0.87440 1.02047 1.61691 1.15432 1.16477 1.32281 1.22507 0.85450 1.03124 1.01080 1.20450 0.90934 0.94473 0.93691 0.90003 1.20346 0.88180 0.76206 0.83577 1.90670 1.71292 1.49724 1.31238 1.46117 1.11362 1.70292 1.09338 1.20751 0.80462 0.96793 0.96878 0.91779 1.22084 0.99891 0.97068 1.01959 1.21897 1.01039 0.96071 0.96640 1.20697 0.96658 0.92953 0.86546 1.42537 1.51814 1.25134 1.19221 1.19524 1.18589 0.98964 1.00960 0.91374 1.25519 1.00651 1.02547 0.97541 1.69793 1.37689 1.41684 1.12567 0.85262 0.78176 0.79729 0.76928 1.20166 1.21797 1.20690 1.19398 0.99196 0.95915 0.95065 1.21073 0.97842 0.93996 0.98773 1.21400 0.97642 0.97312 0.98718 1.21499 0.99353 0.99759 0.93087 1.21407 0.99166 0.94424 0.99647 1.21258 0.96903 0.98443 0.96616 0.93309 0.93500 0.91122 0.93569 0.89067 0.91249 0.89930 0.94828 0.75838 0.91133 0.92789 0.90788 0.90273 0.90265 0.98085 0.96109 0.79214 0.93865 0.86425 0.84577 0.84192 0.84343 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.57 71.98 0.62 -2.42 16 2 C 0.05 0.90 5.65 86.30 0.49 1.39 16 3 N -0.53 -11.10 4.11 -905.94 -3.72 -14.82 16 4 C 0.03 0.43 8.70 127.69 1.11 1.54 16 5 C 0.12 2.56 2.12 43.42 0.09 2.65 16 6 H 0.08 1.49 7.64 -2.38 -0.02 1.48 16 7 C 0.53 14.28 3.84 87.66 0.34 14.62 16 8 O -0.55 -18.60 14.56 -3.03 -0.04 -18.65 16 9 N -0.72 -17.86 4.46 -442.52 -1.97 -19.83 16 10 C 0.16 4.20 2.58 44.99 0.12 4.32 16 11 H 0.06 2.05 7.57 -2.39 -0.02 2.04 16 12 C -0.15 -3.35 9.49 71.98 0.68 -2.66 16 13 C -0.12 -3.61 4.87 30.59 0.15 -3.46 16 14 C 0.16 6.43 6.15 86.38 0.53 6.96 16 15 N -0.74 -38.18 5.60 -343.46 -1.92 -40.11 16 16 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 20 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 C -0.09 -2.21 3.62 -19.87 -0.07 -2.28 16 25 C -0.10 -2.43 7.15 22.27 0.16 -2.27 16 26 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 27 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 28 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 29 C -0.11 -2.45 9.67 22.27 0.22 -2.23 16 30 H 0.05 1.24 7.57 -2.38 -0.02 1.22 16 31 H 0.05 1.06 4.52 -2.39 -0.01 1.04 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.68 7.95 -2.39 -0.02 0.66 16 34 H 0.09 1.33 7.92 -2.38 -0.02 1.31 16 35 H 0.07 1.31 5.46 -2.38 -0.01 1.30 16 36 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 37 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.41 8.79 8.60 -92.71 -0.80 7.99 16 39 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.05 1.27 7.56 -2.39 -0.02 1.25 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.02 0.85 7.75 -2.39 -0.02 0.83 16 46 H 0.38 20.12 7.67 -92.71 -0.71 19.41 16 47 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.12 3.21 7.97 -2.91 -0.02 3.19 16 49 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 50 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 51 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 52 H 0.14 2.40 7.98 -2.91 -0.02 2.38 16 Total: -1.00 -70.35 412.06 0.44 -69.91 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.61 Total: 42.06 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.40 Total: -8.17 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -7.34 Total: -133.38 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.65 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.35 0.44 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273112053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.283 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds