Wall clock time and date at job start Tue Mar 31 2020 18:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.47145 * 2 1 4 4 C 1.46899 * 111.00056 * 170.00234 * 3 2 1 5 5 C 1.46899 * 110.99848 * 293.95598 * 3 2 1 6 6 H 1.09001 * 109.47114 * 316.70236 * 5 3 2 7 7 C 1.50698 * 109.47417 * 76.70578 * 5 3 2 8 8 O 1.21284 * 120.00207 * 29.73146 * 7 5 3 9 9 N 1.34780 * 119.99974 * 209.73516 * 7 5 3 10 10 C 1.46500 * 119.99794 * 179.97438 * 9 7 5 11 11 H 1.09000 * 109.47444 * 324.99634 * 10 9 7 12 12 C 1.53000 * 109.47210 * 84.99955 * 10 9 7 13 13 C 1.53004 * 109.46837 * 205.00003 * 10 9 7 14 14 C 1.53000 * 109.47302 * 65.00312 * 13 10 9 15 15 N 1.46498 * 109.47061 * 179.97438 * 14 13 10 16 16 C 1.36941 * 120.00030 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00130 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99608 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47146 * 90.00038 * 20 18 16 22 22 H 1.48501 * 109.46584 * 209.99355 * 20 18 16 23 23 H 1.48499 * 109.47137 * 329.99574 * 20 18 16 24 24 C 1.50699 * 109.47048 * 196.70677 * 5 3 2 25 25 C 1.38233 * 119.99683 * 311.88926 * 24 5 3 26 26 C 1.38240 * 119.99938 * 179.81055 * 25 24 5 27 27 C 1.38237 * 119.99977 * 0.40465 * 26 25 24 28 28 C 1.38238 * 119.99734 * 359.84943 * 27 26 25 29 29 C 1.38236 * 120.00340 * 359.96101 * 28 27 26 30 30 H 1.08998 * 109.47023 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46877 * 300.00088 * 1 2 3 33 33 H 1.08999 * 109.47496 * 240.00308 * 2 1 3 34 34 H 1.09001 * 109.47518 * 119.99752 * 2 1 3 35 35 H 1.09002 * 109.46956 * 190.56591 * 4 3 2 36 36 H 1.08997 * 109.46874 * 310.55945 * 4 3 2 37 37 H 1.08995 * 109.47429 * 70.56665 * 4 3 2 38 38 H 0.97002 * 120.00214 * 359.97438 * 9 7 5 39 39 H 1.08994 * 109.47168 * 299.99801 * 12 10 9 40 40 H 1.08998 * 109.46669 * 59.99623 * 12 10 9 41 41 H 1.08998 * 109.47142 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.46779 * 185.00164 * 13 10 9 43 43 H 1.08996 * 109.47248 * 304.99626 * 13 10 9 44 44 H 1.08997 * 109.46606 * 299.99827 * 14 13 10 45 45 H 1.08995 * 109.47012 * 59.99397 * 14 13 10 46 46 H 0.96998 * 119.99865 * 0.02562 * 15 14 13 47 47 H 0.97001 * 120.00266 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.00500 * 0.02562 * 25 24 5 49 49 H 1.08000 * 120.00052 * 180.23454 * 26 25 24 50 50 H 1.07997 * 120.00477 * 179.83670 * 27 26 25 51 51 H 1.08000 * 119.99844 * 179.97438 * 28 27 26 52 52 H 1.07993 * 120.00245 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4685 1.4312 0.2381 5 6 1.6702 2.0670 -1.2533 6 1 1.8556 1.3989 -2.0944 7 6 0.2128 2.4496 -1.2275 8 8 -0.3313 2.6946 -0.1716 9 7 -0.4860 2.5197 -2.3778 10 6 -1.9029 2.8912 -2.3527 11 1 -2.3683 2.4881 -1.4532 12 6 -2.0305 4.4158 -2.3535 13 6 -2.6018 2.3201 -3.5882 14 6 -2.5830 0.7916 -3.5240 15 7 -3.2528 0.2449 -4.7066 16 6 -3.3582 -1.1108 -4.8684 17 1 -2.9479 -1.7770 -4.1239 18 6 -3.9923 -1.6288 -5.9893 19 7 -4.4928 -0.8170 -6.8964 20 14 -4.1367 -3.4782 -6.2095 21 1 -5.3962 -3.9544 -5.5833 22 1 -4.1500 -3.8045 -7.6582 23 1 -2.9788 -4.1457 -5.5622 24 6 2.5127 3.3075 -1.4021 25 6 2.6383 4.1886 -0.3443 26 6 3.4143 5.3246 -0.4795 27 6 4.0580 5.5837 -1.6750 28 6 3.9282 4.7053 -2.7345 29 6 3.1553 3.5673 -2.5981 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7742 2.4616 0.4197 36 1 3.7134 0.8210 1.1074 37 1 3.9929 1.0454 -0.6361 38 1 -0.0508 2.3241 -3.2224 39 1 -1.5326 4.8226 -1.4734 40 1 -1.5651 4.8188 -3.2530 41 1 -3.0847 4.6922 -2.3353 42 1 -3.6338 2.6699 -3.6159 43 1 -2.0813 2.6526 -4.4862 44 1 -1.5510 0.4419 -3.4962 45 1 -3.1035 0.4592 -2.6259 46 1 -3.6209 0.8432 -5.3755 47 1 -4.9362 -1.1789 -7.6795 48 1 2.1329 3.9878 0.5888 49 1 3.5155 6.0111 0.3482 50 1 4.6622 6.4726 -1.7815 51 1 4.4308 4.9079 -3.6687 52 1 3.0536 2.8812 -3.4259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273112063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:09 Heat of formation + Delta-G solvation = 9.750984 kcal Electronic energy + Delta-G solvation = -29833.647368 eV Core-core repulsion = 26026.594136 eV Total energy + Delta-G solvation = -3807.053232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79281 -39.06645 -37.40448 -36.14803 -34.30536 -32.72558 -31.82025 -31.22042 -30.69504 -30.09105 -27.91098 -27.75079 -24.62474 -23.99740 -22.90744 -22.37054 -21.99810 -21.33851 -20.43547 -19.97649 -17.53512 -17.20085 -16.97174 -16.32288 -16.07228 -15.53551 -14.93043 -14.82062 -14.62145 -14.36642 -14.23085 -13.82580 -13.69420 -13.46618 -13.39335 -13.29079 -13.14348 -13.01004 -12.80955 -12.67631 -12.40620 -12.15682 -11.83685 -11.66796 -11.50459 -11.26344 -11.20383 -11.17626 -11.02601 -10.82525 -10.78066 -10.60510 -10.55691 -10.04747 -9.82496 -9.70387 -9.12834 -8.92937 -8.85845 -8.83088 -8.49899 -6.93033 -5.77568 -3.06215 1.02565 1.18199 2.74399 3.07933 3.42663 3.47779 3.48195 3.49290 3.93489 4.40666 4.56789 4.62606 4.77318 4.78826 4.87815 4.92864 4.97833 5.06007 5.12338 5.24784 5.30053 5.30351 5.38080 5.39594 5.42632 5.50281 5.55388 5.68695 5.71924 5.75132 5.80249 5.83726 5.86933 5.96343 6.01830 6.08794 6.19823 6.25605 6.29311 6.30830 6.31875 6.36088 6.41462 6.61908 6.72811 6.76317 6.81868 6.86354 6.89321 7.65516 7.69162 8.39594 8.41538 9.52551 10.10594 10.45215 11.45380 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002874 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.776512 B = 9740.427537 C =10343.424125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 N -0.517 5.517 4 C 0.022 3.978 5 C 0.107 3.893 6 H 0.068 0.932 7 C 0.531 3.469 8 O -0.518 6.518 9 N -0.723 5.723 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.160 4.160 13 C -0.135 4.135 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.084 4.084 25 C -0.084 4.084 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.122 4.122 29 C -0.109 4.109 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.398 0.602 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.134 0.866 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.914 12.202 12.486 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 N -0.241 5.241 4 C -0.126 4.126 5 C -0.005 4.005 6 H 0.086 0.914 7 C 0.315 3.685 8 O -0.393 6.393 9 N -0.375 5.375 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.218 4.218 13 C -0.173 4.173 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.085 4.085 25 C -0.103 4.103 26 C -0.144 4.144 27 C -0.134 4.134 28 C -0.140 4.140 29 C -0.127 4.127 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.232 0.768 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.152 0.848 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.281 12.428 13.682 25.997 hybrid contribution 0.374 -1.413 -1.639 2.196 sum 18.655 11.014 12.043 24.786 Atomic orbital electron populations 1.22029 0.94018 1.01587 1.03419 1.22211 0.96957 0.87527 1.00886 1.61768 1.14112 1.16081 1.32167 1.22523 0.86642 1.03083 1.00356 1.20544 0.92750 0.94068 0.93088 0.91444 1.19919 0.87445 0.77008 0.84082 1.90687 1.70252 1.48271 1.30066 1.46157 1.11547 1.70766 1.09030 1.20936 0.80338 0.94396 0.99968 0.89406 1.22147 1.02098 0.95664 1.01897 1.22066 1.01095 0.97663 0.96502 1.20613 0.95536 0.89994 0.91041 1.42371 1.68418 1.04524 1.22492 1.19222 1.30486 0.83244 1.04021 0.91285 1.24738 1.01262 0.97712 0.97316 1.69657 1.43463 1.33171 1.11979 0.86198 0.77811 0.85348 0.76899 1.21684 1.21760 1.20783 1.19404 0.98613 0.95693 0.94756 1.21149 0.97077 0.92960 0.99086 1.21192 0.97917 0.97465 0.97843 1.21199 0.99486 0.99273 0.93431 1.21088 0.99339 0.94623 0.98985 1.21069 0.97111 0.97852 0.96703 0.92365 0.92467 0.90928 0.94752 0.90343 0.90511 0.91219 0.95537 0.76768 0.92433 0.92657 0.91670 0.90301 0.91448 0.96522 0.96463 0.78333 0.93521 0.84782 0.85969 0.86149 0.85918 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.57 37.16 0.32 -1.71 16 2 C 0.05 0.58 5.66 -3.82 -0.02 0.56 16 3 N -0.52 -5.87 4.11 -237.69 -0.98 -6.85 16 4 C 0.02 0.20 8.70 60.06 0.52 0.72 16 5 C 0.11 1.23 2.12 -70.02 -0.15 1.08 16 6 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 7 C 0.53 7.18 3.83 -10.98 -0.04 7.14 16 8 O -0.52 -8.52 14.57 5.55 0.08 -8.44 16 9 N -0.72 -9.23 4.46 -53.80 -0.24 -9.47 16 10 C 0.15 2.03 2.57 -67.93 -0.17 1.85 16 11 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 12 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 13 C -0.14 -2.09 4.87 -26.73 -0.13 -2.22 16 14 C 0.16 3.09 6.15 -4.04 -0.02 3.07 16 15 N -0.73 -18.56 5.60 -59.91 -0.34 -18.89 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.08 -0.88 3.62 -104.62 -0.38 -1.26 16 25 C -0.08 -0.88 7.15 -39.58 -0.28 -1.17 16 26 C -0.13 -1.12 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 29 C -0.11 -1.00 9.67 -39.58 -0.38 -1.39 16 30 H 0.06 0.86 5.09 -51.93 -0.26 0.60 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.06 7.58 -51.93 -0.39 0.67 16 33 H 0.03 0.37 7.95 -51.93 -0.41 -0.04 16 34 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 35 H 0.08 0.71 5.47 -51.93 -0.28 0.43 16 36 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 37 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 38 H 0.40 4.59 8.60 -40.82 -0.35 4.23 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.13 1.56 7.97 -52.48 -0.42 1.15 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 52 H 0.12 0.97 7.98 -52.49 -0.42 0.55 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -32.49 413.23 -10.44 -42.93 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -9.07 Total: 11.13 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.83 Total: -6.55 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.83 Total: -62.74 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.49 -10.44 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273112063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.684 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds