Wall clock time and date at job start Tue Mar 31 2020 18:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.47145 * 2 1 4 4 C 1.46899 * 111.00056 * 170.00234 * 3 2 1 5 5 C 1.46899 * 110.99848 * 293.95598 * 3 2 1 6 6 H 1.09001 * 109.47114 * 316.70236 * 5 3 2 7 7 C 1.50698 * 109.47417 * 76.70578 * 5 3 2 8 8 O 1.21284 * 120.00207 * 29.73146 * 7 5 3 9 9 N 1.34780 * 119.99974 * 209.73516 * 7 5 3 10 10 C 1.46500 * 119.99794 * 179.97438 * 9 7 5 11 11 H 1.09000 * 109.47444 * 324.99634 * 10 9 7 12 12 C 1.53000 * 109.47210 * 84.99955 * 10 9 7 13 13 C 1.53004 * 109.46837 * 205.00003 * 10 9 7 14 14 C 1.53000 * 109.47302 * 65.00312 * 13 10 9 15 15 N 1.46498 * 109.47061 * 179.97438 * 14 13 10 16 16 C 1.36941 * 120.00030 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00130 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99608 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47146 * 90.00038 * 20 18 16 22 22 H 1.48501 * 109.46584 * 209.99355 * 20 18 16 23 23 H 1.48499 * 109.47137 * 329.99574 * 20 18 16 24 24 C 1.50699 * 109.47048 * 196.70677 * 5 3 2 25 25 C 1.38233 * 119.99683 * 311.88926 * 24 5 3 26 26 C 1.38240 * 119.99938 * 179.81055 * 25 24 5 27 27 C 1.38237 * 119.99977 * 0.40465 * 26 25 24 28 28 C 1.38238 * 119.99734 * 359.84943 * 27 26 25 29 29 C 1.38236 * 120.00340 * 359.96101 * 28 27 26 30 30 H 1.08998 * 109.47023 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46877 * 300.00088 * 1 2 3 33 33 H 1.08999 * 109.47496 * 240.00308 * 2 1 3 34 34 H 1.09001 * 109.47518 * 119.99752 * 2 1 3 35 35 H 1.09002 * 109.46956 * 190.56591 * 4 3 2 36 36 H 1.08997 * 109.46874 * 310.55945 * 4 3 2 37 37 H 1.08995 * 109.47429 * 70.56665 * 4 3 2 38 38 H 0.97002 * 120.00214 * 359.97438 * 9 7 5 39 39 H 1.08994 * 109.47168 * 299.99801 * 12 10 9 40 40 H 1.08998 * 109.46669 * 59.99623 * 12 10 9 41 41 H 1.08998 * 109.47142 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.46779 * 185.00164 * 13 10 9 43 43 H 1.08996 * 109.47248 * 304.99626 * 13 10 9 44 44 H 1.08997 * 109.46606 * 299.99827 * 14 13 10 45 45 H 1.08995 * 109.47012 * 59.99397 * 14 13 10 46 46 H 0.96998 * 119.99865 * 0.02562 * 15 14 13 47 47 H 0.97001 * 120.00266 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.00500 * 0.02562 * 25 24 5 49 49 H 1.08000 * 120.00052 * 180.23454 * 26 25 24 50 50 H 1.07997 * 120.00477 * 179.83670 * 27 26 25 51 51 H 1.08000 * 119.99844 * 179.97438 * 28 27 26 52 52 H 1.07993 * 120.00245 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4685 1.4312 0.2381 5 6 1.6702 2.0670 -1.2533 6 1 1.8556 1.3989 -2.0944 7 6 0.2128 2.4496 -1.2275 8 8 -0.3313 2.6946 -0.1716 9 7 -0.4860 2.5197 -2.3778 10 6 -1.9029 2.8912 -2.3527 11 1 -2.3683 2.4881 -1.4532 12 6 -2.0305 4.4158 -2.3535 13 6 -2.6018 2.3201 -3.5882 14 6 -2.5830 0.7916 -3.5240 15 7 -3.2528 0.2449 -4.7066 16 6 -3.3582 -1.1108 -4.8684 17 1 -2.9479 -1.7770 -4.1239 18 6 -3.9923 -1.6288 -5.9893 19 7 -4.4928 -0.8170 -6.8964 20 14 -4.1367 -3.4782 -6.2095 21 1 -5.3962 -3.9544 -5.5833 22 1 -4.1500 -3.8045 -7.6582 23 1 -2.9788 -4.1457 -5.5622 24 6 2.5127 3.3075 -1.4021 25 6 2.6383 4.1886 -0.3443 26 6 3.4143 5.3246 -0.4795 27 6 4.0580 5.5837 -1.6750 28 6 3.9282 4.7053 -2.7345 29 6 3.1553 3.5673 -2.5981 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7742 2.4616 0.4197 36 1 3.7134 0.8210 1.1074 37 1 3.9929 1.0454 -0.6361 38 1 -0.0508 2.3241 -3.2224 39 1 -1.5326 4.8226 -1.4734 40 1 -1.5651 4.8188 -3.2530 41 1 -3.0847 4.6922 -2.3353 42 1 -3.6338 2.6699 -3.6159 43 1 -2.0813 2.6526 -4.4862 44 1 -1.5510 0.4419 -3.4962 45 1 -3.1035 0.4592 -2.6259 46 1 -3.6209 0.8432 -5.3755 47 1 -4.9362 -1.1789 -7.6795 48 1 2.1329 3.9878 0.5888 49 1 3.5155 6.0111 0.3482 50 1 4.6622 6.4726 -1.7815 51 1 4.4308 4.9079 -3.6687 52 1 3.0536 2.8812 -3.4259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273112063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:08 Heat of formation + Delta-G solvation = -10.810716 kcal Electronic energy + Delta-G solvation = -29834.538990 eV Core-core repulsion = 26026.594136 eV Total energy + Delta-G solvation = -3807.944854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72279 -39.93892 -38.36685 -37.43876 -36.03293 -33.77389 -33.28999 -32.22948 -31.78317 -30.99962 -29.45050 -28.61644 -25.90970 -25.43610 -23.62000 -23.57446 -22.87312 -22.76904 -21.59494 -20.92327 -19.22733 -18.31478 -18.01042 -17.38868 -16.86715 -16.68620 -16.43274 -15.74377 -15.70105 -15.48713 -15.39211 -15.16097 -15.04401 -14.87574 -14.50676 -14.30072 -14.16824 -13.99922 -13.80963 -13.56174 -13.43333 -13.13439 -13.01116 -12.90129 -12.86743 -12.52498 -12.45592 -12.37507 -12.26496 -12.09191 -11.99141 -11.92104 -11.91957 -11.73619 -11.63901 -10.96509 -10.85179 -10.00191 -9.80947 -9.61150 -9.34120 -9.01684 -7.96762 -5.25758 0.33031 0.50258 1.46320 1.48026 1.56327 1.71038 2.09418 2.54503 2.75549 3.08372 3.36890 3.59603 3.63038 3.87390 3.89251 4.02127 4.07291 4.16365 4.18129 4.20798 4.23998 4.31476 4.39030 4.47700 4.54869 4.56003 4.62298 4.63538 4.66305 4.71546 4.76008 4.84938 4.86083 4.97809 5.00902 5.01950 5.03568 5.17211 5.22049 5.25926 5.29586 5.34828 5.47518 5.54613 5.58958 5.61830 5.63320 5.90922 6.02633 6.09430 6.25781 6.62680 7.32307 7.34717 8.07337 8.31578 9.26586 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002874 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.776512 B = 9740.427537 C =10343.424125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.531 5.531 4 C 0.026 3.974 5 C 0.112 3.888 6 H 0.075 0.925 7 C 0.531 3.469 8 O -0.552 6.552 9 N -0.719 5.719 10 C 0.157 3.843 11 H 0.068 0.932 12 C -0.150 4.150 13 C -0.119 4.119 14 C 0.158 3.842 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.270 1.270 24 C -0.094 4.094 25 C -0.098 4.098 26 C -0.131 4.131 27 C -0.115 4.115 28 C -0.124 4.124 29 C -0.115 4.115 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.406 0.594 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.022 0.978 45 H 0.006 0.994 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.114 0.886 49 H 0.137 0.863 50 H 0.145 0.855 51 H 0.145 0.855 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.825 12.543 12.146 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 N -0.256 5.256 4 C -0.121 4.121 5 C 0.000 4.000 6 H 0.092 0.908 7 C 0.318 3.682 8 O -0.429 6.429 9 N -0.371 5.371 10 C 0.052 3.948 11 H 0.086 0.914 12 C -0.209 4.209 13 C -0.157 4.157 14 C 0.031 3.969 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.195 1.195 24 C -0.095 4.095 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.142 4.142 29 C -0.133 4.133 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.241 0.759 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.207 0.793 47 H 0.061 0.939 48 H 0.132 0.868 49 H 0.155 0.845 50 H 0.163 0.837 51 H 0.163 0.837 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.225 12.773 13.364 27.401 hybrid contribution -0.196 -1.466 -1.472 2.086 sum 20.029 11.307 11.892 25.893 Atomic orbital electron populations 1.21948 0.95840 1.01177 1.01558 1.22190 0.95285 0.87902 1.01934 1.61716 1.15529 1.15992 1.32390 1.22519 0.85257 1.03325 1.01035 1.20486 0.91249 0.94847 0.93382 0.90768 1.20337 0.88321 0.76066 0.83512 1.90668 1.71158 1.49866 1.31246 1.46117 1.11127 1.70498 1.09398 1.20746 0.80648 0.95402 0.98023 0.91425 1.22052 1.02836 0.94002 1.01984 1.21895 1.01642 0.94400 0.97735 1.20710 0.94779 0.92824 0.88548 1.42560 1.68785 1.03732 1.23714 1.19586 1.29734 0.84694 1.03870 0.91091 1.25543 1.01585 1.02082 0.97309 1.69801 1.44599 1.34935 1.12451 0.85174 0.77985 0.80256 0.76562 1.21508 1.21898 1.19457 1.19356 0.99278 0.95403 0.95459 1.21058 0.98017 0.94067 0.98511 1.21403 0.97477 0.97077 0.98887 1.21521 0.99029 0.99936 0.92819 1.21407 0.98774 0.94033 0.99946 1.21258 0.97064 0.98559 0.96454 0.94144 0.92066 0.92809 0.94076 0.88836 0.90660 0.90087 0.94956 0.75867 0.93407 0.91413 0.90664 0.90246 0.90434 0.96003 0.97630 0.79266 0.93898 0.86787 0.84518 0.83725 0.83738 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.57 71.98 0.62 -3.38 16 2 C 0.05 1.18 5.66 86.30 0.49 1.67 16 3 N -0.53 -11.88 4.11 -905.93 -3.73 -15.61 16 4 C 0.03 0.45 8.70 127.69 1.11 1.56 16 5 C 0.11 2.52 2.12 43.42 0.09 2.61 16 6 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 7 C 0.53 14.51 3.83 87.66 0.34 14.84 16 8 O -0.55 -18.77 14.57 -3.04 -0.04 -18.82 16 9 N -0.72 -18.15 4.46 -442.52 -1.97 -20.12 16 10 C 0.16 4.26 2.57 44.99 0.12 4.37 16 11 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 13 C -0.12 -3.60 4.87 30.60 0.15 -3.45 16 14 C 0.16 6.27 6.15 86.38 0.53 6.80 16 15 N -0.75 -37.79 5.60 -343.46 -1.92 -39.72 16 16 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 19 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 20 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 C -0.09 -1.89 3.62 -19.87 -0.07 -1.96 16 25 C -0.10 -2.02 7.15 22.27 0.16 -1.86 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 27 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 28 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 29 C -0.11 -1.90 9.67 22.27 0.22 -1.69 16 30 H 0.04 1.22 5.09 -2.39 -0.01 1.21 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.63 7.58 -2.39 -0.02 1.62 16 33 H 0.04 0.84 7.95 -2.39 -0.02 0.82 16 34 H 0.09 1.74 7.92 -2.39 -0.02 1.72 16 35 H 0.07 1.34 5.47 -2.39 -0.01 1.33 16 36 H 0.08 1.20 7.92 -2.39 -0.02 1.18 16 37 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 38 H 0.41 8.97 8.60 -92.71 -0.80 8.18 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 45 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.38 19.99 7.67 -92.71 -0.71 19.28 16 47 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 48 H 0.11 2.76 7.97 -2.91 -0.02 2.74 16 49 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 50 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 51 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 52 H 0.13 1.83 7.98 -2.91 -0.02 1.81 16 Total: -1.00 -69.75 413.23 0.44 -69.31 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -0.61 Total: 40.25 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 6.40 Total: -4.82 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -7.34 Total: -134.01 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.82 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.75 0.44 -69.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273112063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.499 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds