Wall clock time and date at job start Tue Mar 31 2020 17:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.53007 * 109.46953 * 119.99578 * 2 1 3 5 5 N 1.46505 * 109.47029 * 174.99965 * 4 2 1 6 6 C 1.46504 * 119.99661 * 270.00179 * 5 4 2 7 7 C 1.36930 * 120.00032 * 89.99889 * 5 4 2 8 8 H 1.08006 * 120.00134 * 23.46416 * 7 5 4 9 9 C 1.38809 * 120.00287 * 203.45835 * 7 5 4 10 10 N 1.31625 * 120.00050 * 13.33525 * 9 7 5 11 11 Si 1.86803 * 120.00378 * 193.33319 * 9 7 5 12 12 H 1.48495 * 109.47141 * 90.00029 * 11 9 7 13 13 H 1.48497 * 109.47063 * 210.00054 * 11 9 7 14 14 H 1.48501 * 109.46907 * 330.00005 * 11 9 7 15 15 N 1.46496 * 109.47149 * 239.99682 * 2 1 3 16 16 C 1.34777 * 119.99936 * 84.99928 * 15 2 1 17 17 O 1.21278 * 120.00188 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99516 * 179.97438 * 16 15 2 19 19 C 1.53004 * 109.46507 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.46618 * 180.02562 * 19 18 16 21 21 C 1.38301 * 119.96134 * 269.97444 * 20 19 18 22 22 C 1.38265 * 120.14816 * 179.97438 * 21 20 19 23 23 C 1.38128 * 120.07556 * 359.75353 * 22 21 20 24 24 C 1.38885 * 119.92058 * 0.52510 * 23 22 21 25 25 N 1.39671 * 120.07219 * 179.74629 * 24 23 22 26 26 C 1.46510 * 120.00177 * 174.15804 * 25 24 23 27 27 C 1.46503 * 120.00291 * 353.88861 * 25 24 23 28 28 C 1.38081 * 119.95962 * 90.00585 * 20 19 18 29 29 H 1.09010 * 109.47166 * 300.00357 * 1 2 3 30 30 H 1.08995 * 109.47168 * 59.99778 * 1 2 3 31 31 H 1.08992 * 109.47508 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47113 * 294.99500 * 4 2 1 33 33 H 1.09003 * 109.47002 * 55.00279 * 4 2 1 34 34 H 1.08998 * 109.47133 * 95.18183 * 6 5 4 35 35 H 1.09000 * 109.46548 * 215.18101 * 6 5 4 36 36 H 1.08998 * 109.47109 * 335.17832 * 6 5 4 37 37 H 0.96998 * 120.00372 * 180.02562 * 10 9 7 38 38 H 0.97002 * 120.00033 * 265.00170 * 15 2 1 39 39 H 1.08998 * 109.46800 * 60.00984 * 18 16 15 40 40 H 1.08993 * 109.47669 * 300.00350 * 18 16 15 41 41 H 1.08998 * 109.46800 * 60.00968 * 19 18 16 42 42 H 1.09000 * 109.47551 * 300.00076 * 19 18 16 43 43 H 1.08004 * 119.93055 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.96023 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.03799 * 180.26942 * 23 22 21 46 46 H 1.09002 * 109.46658 * 89.99970 * 26 25 24 47 47 H 1.08996 * 109.47415 * 210.00372 * 26 25 24 48 48 H 1.09001 * 109.46546 * 330.00481 * 26 25 24 49 49 H 1.09000 * 109.46564 * 4.41908 * 27 25 24 50 50 H 1.08996 * 109.47379 * 124.41785 * 27 25 24 51 51 H 1.09000 * 109.46939 * 244.42750 * 27 25 24 52 52 H 1.07996 * 120.03971 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5614 7 6 4.2798 0.1649 1.7240 8 1 3.8825 0.8087 2.4948 9 6 5.5810 0.3421 1.2742 10 7 5.9826 -0.2523 0.1706 11 14 6.7622 1.4243 2.2350 12 1 7.4849 0.6004 3.2369 13 1 7.7401 2.0396 1.3020 14 1 6.0006 2.4932 2.9297 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8590 1.1585 -2.4115 18 6 2.6499 -0.7288 -3.5873 19 6 2.7018 0.2544 -4.7585 20 6 3.2042 -0.4562 -5.9889 21 6 4.5597 -0.4924 -6.2606 22 6 5.0249 -1.1436 -7.3881 23 6 4.1368 -1.7649 -8.2444 24 6 2.7744 -1.7254 -7.9776 25 7 1.8732 -2.3480 -8.8443 26 6 0.4515 -2.4167 -8.4972 27 6 2.3486 -2.9272 -10.1032 28 6 2.3104 -1.0697 -6.8441 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7517 -0.1582 2.1370 33 1 1.6053 -1.7198 1.2953 34 1 4.3636 -1.7604 -0.4768 35 1 5.0411 -2.2458 1.0960 36 1 3.4381 -2.8369 0.5968 37 1 6.8919 -0.1288 -0.1436 38 1 2.2490 -1.6318 -1.1525 39 1 1.9776 -1.5510 -3.8324 40 1 3.6492 -1.1206 -3.3978 41 1 3.3744 1.0764 -4.5132 42 1 1.7027 0.6466 -4.9483 43 1 5.2567 -0.0108 -5.5906 44 1 6.0841 -1.1704 -7.5971 45 1 4.5012 -2.2772 -9.1227 46 1 -0.0608 -1.5378 -8.8885 47 1 0.0144 -3.3157 -8.9317 48 1 0.3434 -2.4476 -7.4130 49 1 3.4344 -2.8465 -10.1530 50 1 2.0597 -3.9771 -10.1521 51 1 1.9054 -2.3889 -10.9410 52 1 1.2519 -1.0403 -6.6318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275630265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:04 Heat of formation + Delta-G solvation = 13.881538 kcal Electronic energy + Delta-G solvation = -28895.207447 eV Core-core repulsion = 25088.333329 eV Total energy + Delta-G solvation = -3806.874118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.82832 -39.09370 -36.70405 -36.21998 -33.99015 -33.45386 -31.30935 -30.55822 -30.16077 -29.36117 -28.14436 -26.15217 -25.58224 -24.93141 -24.38254 -21.87400 -21.52238 -20.38912 -19.94001 -19.56565 -17.43534 -16.75535 -16.44700 -16.01584 -15.46249 -15.42204 -15.26456 -15.00049 -14.73947 -14.12223 -13.98334 -13.67752 -13.61830 -13.38051 -13.04650 -12.98382 -12.83318 -12.62806 -12.55283 -12.24368 -12.10958 -11.99934 -11.75919 -11.65245 -11.42378 -11.34883 -11.03317 -10.84375 -10.78213 -10.74134 -10.61554 -10.50820 -10.17631 -9.92946 -9.85567 -9.82304 -9.18708 -8.65595 -8.55413 -8.26203 -7.35826 -6.71686 -5.70113 -3.15914 1.45718 1.65448 2.95761 3.34846 3.41056 3.47756 3.48898 3.81401 4.01427 4.53568 4.65070 4.77018 4.96309 5.02349 5.06507 5.17037 5.28860 5.32516 5.35247 5.38305 5.42962 5.46345 5.51594 5.53332 5.60926 5.62421 5.71010 5.75958 5.88184 5.97294 6.04881 6.05248 6.14489 6.15223 6.28104 6.29535 6.42599 6.51422 6.58237 6.61516 6.67075 6.82234 6.90338 6.95040 7.10189 7.27390 7.34189 7.41928 7.67672 7.83249 8.25168 8.41900 8.96103 9.25446 9.88111 10.36588 11.34826 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.002673 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.209808 B =10474.213721 C =11726.201855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.556 6.556 18 C -0.132 4.132 19 C -0.064 4.064 20 C -0.028 4.028 21 C -0.169 4.169 22 C -0.071 4.071 23 C -0.207 4.207 24 C 0.210 3.790 25 N -0.642 5.642 26 C 0.095 3.905 27 C 0.092 3.908 28 C -0.192 4.192 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.040 0.960 36 H -0.005 1.005 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.052 0.948 51 H 0.049 0.951 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -7.659 -17.536 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.349 5.349 16 C 0.304 3.696 17 O -0.435 6.435 18 C -0.172 4.172 19 C -0.102 4.102 20 C -0.029 4.029 21 C -0.188 4.188 22 C -0.090 4.090 23 C -0.229 4.229 24 C 0.110 3.890 25 N -0.356 5.356 26 C -0.048 4.048 27 C -0.052 4.052 28 C -0.215 4.215 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.473 -6.921 -17.740 21.268 hybrid contribution 0.912 0.092 0.339 0.977 sum -8.561 -6.830 -17.401 20.560 Atomic orbital electron populations 1.22148 0.97100 1.00926 1.01565 1.21816 0.91488 0.99159 0.86604 0.89780 1.21195 0.85802 0.97134 0.94421 1.43885 0.99067 1.20791 1.68144 1.20845 0.94426 0.85130 0.98023 1.19160 0.94447 1.10652 1.14261 0.91499 1.25001 0.98939 0.99202 0.96221 1.70037 1.17239 1.46692 1.20752 0.86278 0.81089 0.80194 0.79110 1.21621 1.21811 1.20544 1.45793 1.66151 1.13620 1.09328 1.20422 0.77217 0.87221 0.84738 1.90633 1.51269 1.16079 1.85491 1.21584 1.03572 0.99092 0.92929 1.20329 1.02523 0.97130 0.90173 1.19718 0.93158 0.95125 0.94921 1.20941 0.95093 1.03927 0.98882 1.20873 0.98941 0.95449 0.93718 1.20645 0.91370 1.07894 1.02997 1.17789 0.89256 0.92019 0.89945 1.46243 1.06188 1.62695 1.20431 1.21577 0.80786 1.00992 1.01428 1.21651 1.00916 0.97417 0.85176 1.20539 0.99610 1.04910 0.96395 0.92252 0.93039 0.93320 0.92443 0.94127 0.94832 0.94153 0.98617 0.93895 0.77214 0.89748 0.88491 0.89983 0.90655 0.86050 0.86267 0.86311 0.93618 0.91809 0.91243 0.90404 0.92905 0.93292 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.03 16 3 H 0.08 1.95 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.79 5.33 -4.04 -0.02 2.77 16 5 N -0.60 -14.38 2.78 -181.11 -0.50 -14.88 16 6 C 0.16 3.71 7.60 59.85 0.45 4.16 16 7 C -0.26 -6.95 9.65 -15.06 -0.15 -7.10 16 8 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 9 C 0.01 0.14 5.09 -17.43 -0.09 0.05 16 10 N -0.90 -25.88 10.76 55.49 0.60 -25.29 16 11 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.70 -12.82 4.42 -53.81 -0.24 -13.05 16 16 C 0.52 9.82 7.79 -10.98 -0.09 9.74 16 17 O -0.56 -12.45 15.64 5.56 0.09 -12.36 16 18 C -0.13 -1.99 5.68 -27.88 -0.16 -2.15 16 19 C -0.06 -0.94 4.63 -27.88 -0.13 -1.07 16 20 C -0.03 -0.38 5.13 -104.65 -0.54 -0.92 16 21 C -0.17 -2.25 9.70 -39.55 -0.38 -2.64 16 22 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 23 C -0.21 -2.33 9.31 -39.38 -0.37 -2.70 16 24 C 0.21 2.46 6.54 -83.79 -0.55 1.91 16 25 N -0.64 -6.15 3.41 -187.54 -0.64 -6.79 16 26 C 0.10 0.73 10.10 59.85 0.60 1.33 16 27 C 0.09 0.64 10.63 59.85 0.64 1.28 16 28 C -0.19 -2.38 8.81 -39.38 -0.35 -2.73 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 35 H 0.04 1.03 7.38 -51.93 -0.38 0.64 16 36 H 0.00 -0.09 7.83 -51.93 -0.41 -0.50 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.39 6.63 7.19 -40.82 -0.29 6.34 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 42 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 43 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.12 1.09 5.75 -52.49 -0.30 0.78 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 48 H 0.07 0.54 6.45 -51.93 -0.33 0.20 16 49 H 0.08 0.51 5.31 -51.93 -0.28 0.24 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.12 1.34 6.31 -52.49 -0.33 1.01 16 LS Contribution 414.47 15.07 6.25 6.25 Total: -1.00 -32.65 414.47 -9.77 -42.41 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.93 Total: 5.92 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.36 Total: 0.64 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.78 Total: -60.01 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.65 -9.77 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275630265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.296 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds