Wall clock time and date at job start Tue Mar 31 2020 17:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.53007 * 109.46953 * 119.99578 * 2 1 3 5 5 N 1.46505 * 109.47029 * 174.99965 * 4 2 1 6 6 C 1.46504 * 119.99661 * 270.00179 * 5 4 2 7 7 C 1.36930 * 120.00032 * 89.99889 * 5 4 2 8 8 H 1.08006 * 120.00134 * 23.46416 * 7 5 4 9 9 C 1.38809 * 120.00287 * 203.45835 * 7 5 4 10 10 N 1.31625 * 120.00050 * 13.33525 * 9 7 5 11 11 Si 1.86803 * 120.00378 * 193.33319 * 9 7 5 12 12 H 1.48495 * 109.47141 * 90.00029 * 11 9 7 13 13 H 1.48497 * 109.47063 * 210.00054 * 11 9 7 14 14 H 1.48501 * 109.46907 * 330.00005 * 11 9 7 15 15 N 1.46496 * 109.47149 * 239.99682 * 2 1 3 16 16 C 1.34777 * 119.99936 * 84.99928 * 15 2 1 17 17 O 1.21278 * 120.00188 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99516 * 179.97438 * 16 15 2 19 19 C 1.53004 * 109.46507 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.46618 * 180.02562 * 19 18 16 21 21 C 1.38301 * 119.96134 * 269.97444 * 20 19 18 22 22 C 1.38265 * 120.14816 * 179.97438 * 21 20 19 23 23 C 1.38128 * 120.07556 * 359.75353 * 22 21 20 24 24 C 1.38885 * 119.92058 * 0.52510 * 23 22 21 25 25 N 1.39671 * 120.07219 * 179.74629 * 24 23 22 26 26 C 1.46510 * 120.00177 * 174.15804 * 25 24 23 27 27 C 1.46503 * 120.00291 * 353.88861 * 25 24 23 28 28 C 1.38081 * 119.95962 * 90.00585 * 20 19 18 29 29 H 1.09010 * 109.47166 * 300.00357 * 1 2 3 30 30 H 1.08995 * 109.47168 * 59.99778 * 1 2 3 31 31 H 1.08992 * 109.47508 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47113 * 294.99500 * 4 2 1 33 33 H 1.09003 * 109.47002 * 55.00279 * 4 2 1 34 34 H 1.08998 * 109.47133 * 95.18183 * 6 5 4 35 35 H 1.09000 * 109.46548 * 215.18101 * 6 5 4 36 36 H 1.08998 * 109.47109 * 335.17832 * 6 5 4 37 37 H 0.96998 * 120.00372 * 180.02562 * 10 9 7 38 38 H 0.97002 * 120.00033 * 265.00170 * 15 2 1 39 39 H 1.08998 * 109.46800 * 60.00984 * 18 16 15 40 40 H 1.08993 * 109.47669 * 300.00350 * 18 16 15 41 41 H 1.08998 * 109.46800 * 60.00968 * 19 18 16 42 42 H 1.09000 * 109.47551 * 300.00076 * 19 18 16 43 43 H 1.08004 * 119.93055 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.96023 * 180.02562 * 22 21 20 45 45 H 1.08001 * 120.03799 * 180.26942 * 23 22 21 46 46 H 1.09002 * 109.46658 * 89.99970 * 26 25 24 47 47 H 1.08996 * 109.47415 * 210.00372 * 26 25 24 48 48 H 1.09001 * 109.46546 * 330.00481 * 26 25 24 49 49 H 1.09000 * 109.46564 * 4.41908 * 27 25 24 50 50 H 1.08996 * 109.47379 * 124.41785 * 27 25 24 51 51 H 1.09000 * 109.46939 * 244.42750 * 27 25 24 52 52 H 1.07996 * 120.03971 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5614 7 6 4.2798 0.1649 1.7240 8 1 3.8825 0.8087 2.4948 9 6 5.5810 0.3421 1.2742 10 7 5.9826 -0.2523 0.1706 11 14 6.7622 1.4243 2.2350 12 1 7.4849 0.6004 3.2369 13 1 7.7401 2.0396 1.3020 14 1 6.0006 2.4932 2.9297 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8590 1.1585 -2.4115 18 6 2.6499 -0.7288 -3.5873 19 6 2.7018 0.2544 -4.7585 20 6 3.2042 -0.4562 -5.9889 21 6 4.5597 -0.4924 -6.2606 22 6 5.0249 -1.1436 -7.3881 23 6 4.1368 -1.7649 -8.2444 24 6 2.7744 -1.7254 -7.9776 25 7 1.8732 -2.3480 -8.8443 26 6 0.4515 -2.4167 -8.4972 27 6 2.3486 -2.9272 -10.1032 28 6 2.3104 -1.0697 -6.8441 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7517 -0.1582 2.1370 33 1 1.6053 -1.7198 1.2953 34 1 4.3636 -1.7604 -0.4768 35 1 5.0411 -2.2458 1.0960 36 1 3.4381 -2.8369 0.5968 37 1 6.8919 -0.1288 -0.1436 38 1 2.2490 -1.6318 -1.1525 39 1 1.9776 -1.5510 -3.8324 40 1 3.6492 -1.1206 -3.3978 41 1 3.3744 1.0764 -4.5132 42 1 1.7027 0.6466 -4.9483 43 1 5.2567 -0.0108 -5.5906 44 1 6.0841 -1.1704 -7.5971 45 1 4.5012 -2.2772 -9.1227 46 1 -0.0608 -1.5378 -8.8885 47 1 0.0144 -3.3157 -8.9317 48 1 0.3434 -2.4476 -7.4130 49 1 3.4344 -2.8465 -10.1530 50 1 2.0597 -3.9771 -10.1521 51 1 1.9054 -2.3889 -10.9410 52 1 1.2519 -1.0403 -6.6318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275630265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:02 Heat of formation + Delta-G solvation = -4.395409 kcal Electronic energy + Delta-G solvation = -28895.999995 eV Core-core repulsion = 25088.333329 eV Total energy + Delta-G solvation = -3807.666666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.92454 -40.41221 -38.10929 -37.35226 -35.72363 -34.61123 -33.10260 -32.00502 -31.18910 -30.34859 -28.88768 -27.95234 -27.39088 -25.74074 -25.50836 -23.50688 -22.55854 -21.81577 -21.23529 -20.86835 -18.75483 -18.37879 -17.77993 -17.10417 -16.93050 -16.65347 -16.33024 -16.19765 -15.90730 -15.56078 -15.28684 -15.10471 -14.97044 -14.63086 -14.49812 -14.13622 -13.90519 -13.73020 -13.68428 -13.33619 -13.31528 -13.07313 -12.89818 -12.85192 -12.75524 -12.66772 -12.60969 -12.52056 -12.34418 -12.27916 -12.03317 -11.92767 -11.81232 -11.68501 -11.58932 -10.78574 -10.65000 -10.59601 -9.84229 -9.63281 -8.70006 -8.15341 -7.80233 -5.26493 0.51314 0.71520 1.44180 1.45296 1.52897 1.83329 2.28337 2.46651 2.53463 2.97718 3.32870 3.70384 3.76298 3.97190 4.01923 4.11093 4.18876 4.22927 4.31370 4.39596 4.45486 4.53135 4.53455 4.56659 4.58547 4.65159 4.68804 4.78893 4.79467 4.81664 4.85923 4.92218 4.93584 4.95548 5.02437 5.06296 5.13350 5.20092 5.23656 5.36816 5.39580 5.41383 5.67134 5.67550 5.77574 5.82583 5.85925 5.97421 6.36266 6.39691 6.59985 6.77127 7.19615 7.47290 7.91751 8.32586 9.21460 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.002673 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.209808 B =10474.213721 C =11726.201855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.033 0.967 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.260 4.260 8 H 0.065 0.935 9 C -0.049 4.049 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.284 1.284 13 H -0.300 1.300 14 H -0.274 1.274 15 N -0.696 5.696 16 C 0.509 3.491 17 O -0.597 6.597 18 C -0.119 4.119 19 C -0.055 4.055 20 C -0.037 4.037 21 C -0.193 4.193 22 C -0.073 4.073 23 C -0.209 4.209 24 C 0.207 3.793 25 N -0.646 5.646 26 C 0.090 3.910 27 C 0.085 3.915 28 C -0.200 4.200 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.015 0.985 35 H 0.008 0.992 36 H 0.038 0.962 37 H 0.244 0.756 38 H 0.403 0.597 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.048 0.952 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -9.657 -18.461 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.051 0.949 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.391 4.391 8 H 0.082 0.918 9 C -0.245 4.245 10 N -0.573 5.573 11 Si 0.788 3.212 12 H -0.211 1.211 13 H -0.227 1.227 14 H -0.199 1.199 15 N -0.345 5.345 16 C 0.297 3.703 17 O -0.479 6.479 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.038 4.038 21 C -0.213 4.213 22 C -0.091 4.091 23 C -0.231 4.231 24 C 0.105 3.895 25 N -0.358 5.358 26 C -0.053 4.053 27 C -0.057 4.057 28 C -0.223 4.223 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.239 0.761 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.075 -8.958 -18.659 23.475 hybrid contribution 1.310 0.673 0.595 1.589 sum -9.764 -8.284 -18.064 22.143 Atomic orbital electron populations 1.22005 0.93735 1.02798 1.01787 1.21630 0.93995 0.96304 0.86668 0.94868 1.21370 0.83270 0.99213 0.94600 1.44093 1.00883 1.20392 1.67993 1.20645 0.94230 0.86152 0.96216 1.19430 0.94964 1.10744 1.13928 0.91755 1.25666 1.00530 1.01008 0.97294 1.70183 1.16947 1.48170 1.21951 0.85400 0.79137 0.78889 0.77820 1.21079 1.22688 1.19927 1.45804 1.65721 1.13991 1.08989 1.21085 0.76497 0.86894 0.85827 1.90609 1.53118 1.17933 1.86216 1.21529 1.03522 0.99564 0.91230 1.20173 1.01770 0.96413 0.90895 1.19579 0.93492 0.95962 0.94779 1.20977 0.95055 1.05353 0.99920 1.21096 1.00165 0.94802 0.93063 1.20936 0.91214 1.07509 1.03488 1.17956 0.89978 0.91633 0.89965 1.46523 1.06631 1.61925 1.20720 1.21719 0.79931 1.02173 1.01490 1.21836 1.01274 0.98293 0.84280 1.20612 0.99854 1.05140 0.96668 0.90706 0.94201 0.90502 0.92025 0.90554 0.96724 0.97276 0.94370 0.94674 0.76112 0.86537 0.89239 0.92769 0.90723 0.87309 0.84463 0.83989 0.93299 0.89756 0.91592 0.90079 0.91412 0.92255 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.48 71.98 0.68 -3.46 16 2 C 0.12 4.56 2.88 44.99 0.13 4.69 16 3 H 0.03 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.14 5.30 5.33 86.38 0.46 5.76 16 5 N -0.61 -29.13 2.78 -726.91 -2.02 -31.14 16 6 C 0.17 7.86 7.60 127.77 0.97 8.83 16 7 C -0.26 -14.25 9.65 84.03 0.81 -13.44 16 8 H 0.06 3.49 7.86 -2.91 -0.02 3.47 16 9 C -0.05 -2.79 5.09 84.86 0.43 -2.36 16 10 N -0.93 -54.50 10.76 21.65 0.23 -54.27 16 11 Si 0.96 46.40 29.57 68.60 2.03 48.43 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 15 N -0.70 -25.17 4.42 -442.54 -1.96 -27.13 16 16 C 0.51 19.69 7.79 87.66 0.68 20.37 16 17 O -0.60 -27.84 15.64 -3.02 -0.05 -27.89 16 18 C -0.12 -3.63 5.68 29.85 0.17 -3.46 16 19 C -0.05 -1.68 4.63 29.85 0.14 -1.54 16 20 C -0.04 -1.03 5.13 -19.88 -0.10 -1.13 16 21 C -0.19 -5.32 9.70 22.29 0.22 -5.10 16 22 C -0.07 -1.67 10.04 22.25 0.22 -1.45 16 23 C -0.21 -4.36 9.31 22.40 0.21 -4.15 16 24 C 0.21 4.51 6.54 38.21 0.25 4.76 16 25 N -0.65 -10.82 3.41 -747.26 -2.55 -13.36 16 26 C 0.09 1.15 10.10 127.77 1.29 2.44 16 27 C 0.09 0.95 10.63 127.77 1.36 2.31 16 28 C -0.20 -4.82 8.81 22.40 0.20 -4.62 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 33 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 34 H 0.01 0.72 6.90 -2.39 -0.02 0.70 16 35 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 36 H 0.04 1.39 7.83 -2.39 -0.02 1.37 16 37 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.40 12.98 7.19 -92.71 -0.67 12.31 16 39 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 42 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 43 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.14 2.22 5.75 -2.91 -0.02 2.20 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 48 H 0.07 0.90 6.45 -2.39 -0.02 0.88 16 49 H 0.08 0.83 5.31 -2.39 -0.01 0.82 16 50 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 52 H 0.13 2.75 6.31 -2.91 -0.02 2.74 16 Total: -1.00 -72.72 414.47 4.04 -68.68 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.23 Total: 28.23 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 8.12 Total: 8.46 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.29 Total: -125.91 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -72.72 4.04 -68.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275630265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.288 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds