Wall clock time and date at job start Tue Mar 31 2020 17:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47119 * 2 1 4 4 C 1.52996 * 109.47088 * 120.00331 * 2 1 3 5 5 N 1.46506 * 109.47198 * 175.00114 * 4 2 1 6 6 C 1.46497 * 120.00078 * 269.99898 * 5 4 2 7 7 C 1.36942 * 119.99853 * 89.99800 * 5 4 2 8 8 H 1.07991 * 119.99742 * 23.61942 * 7 5 4 9 9 C 1.38808 * 119.99430 * 203.61690 * 7 5 4 10 10 N 1.31614 * 120.00365 * 11.31071 * 9 7 5 11 11 Si 1.86810 * 119.99661 * 191.31078 * 9 7 5 12 12 H 1.48496 * 109.46864 * 60.00017 * 11 9 7 13 13 H 1.48495 * 109.47006 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46845 * 300.00240 * 11 9 7 15 15 N 1.46501 * 109.47341 * 240.00057 * 2 1 3 16 16 C 1.34780 * 119.99947 * 85.00097 * 15 2 1 17 17 O 1.21280 * 119.99965 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99917 * 180.02562 * 16 15 2 19 19 N 1.46903 * 109.46858 * 180.02562 * 18 16 15 20 20 C 1.46895 * 111.00571 * 66.04150 * 19 18 16 21 21 C 1.46907 * 110.99634 * 189.99936 * 19 18 16 22 22 C 1.53000 * 109.46886 * 169.99915 * 21 19 18 23 23 C 1.50701 * 109.47115 * 179.97438 * 22 21 19 24 24 C 1.38229 * 119.99883 * 269.72324 * 23 22 21 25 25 C 1.38240 * 119.99788 * 179.76252 * 24 23 22 26 26 C 1.38237 * 119.99825 * 0.51090 * 25 24 23 27 27 C 1.38235 * 119.99806 * 359.74413 * 26 25 24 28 28 C 1.38227 * 120.00319 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.46985 * 299.99666 * 1 2 3 30 30 H 1.09003 * 109.46678 * 59.99928 * 1 2 3 31 31 H 1.09003 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47230 * 294.99710 * 4 2 1 33 33 H 1.08992 * 109.47617 * 54.99715 * 4 2 1 34 34 H 1.08995 * 109.47352 * 94.52959 * 6 5 4 35 35 H 1.08997 * 109.47484 * 214.53878 * 6 5 4 36 36 H 1.09007 * 109.46792 * 334.53537 * 6 5 4 37 37 H 0.97004 * 119.99794 * 179.97438 * 10 9 7 38 38 H 0.96995 * 120.00154 * 265.00515 * 15 2 1 39 39 H 1.08999 * 109.46840 * 299.99268 * 18 16 15 40 40 H 1.08995 * 109.47313 * 59.99447 * 18 16 15 41 41 H 1.09006 * 109.46869 * 59.99878 * 20 19 18 42 42 H 1.08996 * 109.47454 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.47295 * 300.00441 * 20 19 18 44 44 H 1.09003 * 109.46742 * 289.99407 * 21 19 18 45 45 H 1.08995 * 109.47032 * 49.99949 * 21 19 18 46 46 H 1.09003 * 109.47016 * 299.99325 * 22 21 19 47 47 H 1.09001 * 109.47419 * 59.99477 * 22 21 19 48 48 H 1.07997 * 120.00321 * 0.02562 * 24 23 22 49 49 H 1.07999 * 119.99815 * 180.22834 * 25 24 23 50 50 H 1.07997 * 119.99404 * 179.71832 * 26 25 24 51 51 H 1.08001 * 119.99193 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.00353 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1648 1.7240 8 1 3.8834 0.8069 2.4965 9 6 5.5799 0.3442 1.2718 10 7 5.9918 -0.2795 0.1885 11 14 6.7449 1.4708 2.2010 12 1 6.9136 0.9720 3.5894 13 1 8.0638 1.4903 1.5189 14 1 6.1835 2.8452 2.2335 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0182 -2.3571 17 8 1.8583 1.1584 -2.4117 18 6 2.6490 -0.7287 -3.5877 19 7 2.6991 0.2155 -4.7120 20 6 3.7044 1.2606 -4.4775 21 6 2.9542 -0.4859 -5.9774 22 6 2.7534 0.4812 -7.1459 23 6 3.0156 -0.2381 -8.4440 24 6 4.2888 -0.2509 -8.9821 25 6 4.5303 -0.9148 -10.1703 26 6 3.4964 -1.5570 -10.8257 27 6 2.2221 -1.5397 -10.2902 28 6 1.9816 -0.8799 -9.0997 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 4.3533 -1.7642 -0.4802 35 1 5.0472 -2.2389 1.0887 36 1 3.4426 -2.8400 0.6067 37 1 6.9003 -0.1538 -0.1277 38 1 2.2490 -1.6317 -1.1527 39 1 3.6482 -1.1211 -3.3986 40 1 1.9762 -1.5505 -3.8326 41 1 4.6862 0.8012 -4.3629 42 1 3.7209 1.9456 -5.3252 43 1 3.4524 1.8102 -3.5706 44 1 3.9784 -0.8586 -5.9862 45 1 2.2622 -1.3224 -6.0750 46 1 1.7291 0.8539 -7.1372 47 1 3.4453 1.3177 -7.0483 48 1 5.0957 0.2543 -8.4721 49 1 5.5258 -0.9279 -10.5889 50 1 3.6842 -2.0718 -11.7563 51 1 1.4143 -2.0411 -10.8026 52 1 0.9859 -0.8660 -8.6815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275647350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:21 Heat of formation + Delta-G solvation = 15.864706 kcal Electronic energy + Delta-G solvation = -28895.927251 eV Core-core repulsion = 25089.139130 eV Total energy + Delta-G solvation = -3806.788121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.64214 -39.24851 -37.21499 -36.03804 -33.94655 -33.15861 -31.33769 -31.08107 -30.33931 -28.82429 -27.52015 -26.17012 -25.59663 -25.06622 -22.76022 -22.30664 -21.55107 -20.65837 -20.14448 -19.66264 -17.01634 -16.79111 -16.64098 -15.80399 -15.77601 -15.41787 -15.10983 -14.81065 -14.65886 -14.30767 -13.98307 -13.72398 -13.58522 -13.27486 -13.16018 -12.99569 -12.92176 -12.73850 -12.52246 -12.12042 -12.00455 -11.84360 -11.47951 -11.44318 -11.32712 -11.30320 -11.09893 -10.96350 -10.81728 -10.77260 -10.74544 -10.53158 -10.19901 -9.97122 -9.84898 -9.16138 -9.11865 -8.84963 -8.58130 -8.29991 -8.10042 -6.74336 -5.73561 -3.19193 1.15477 1.20280 3.32637 3.39476 3.44243 3.45216 3.51194 3.67989 4.27133 4.50722 4.64862 4.73017 4.81978 4.94080 5.00016 5.15841 5.23304 5.33017 5.36348 5.39014 5.45788 5.50348 5.52710 5.64145 5.71496 5.73047 5.76523 5.86503 5.87752 5.91317 5.93350 6.04055 6.05578 6.13600 6.27216 6.28762 6.31128 6.47071 6.49007 6.52304 6.57048 6.65379 6.81456 6.92482 7.07431 7.21094 7.27072 7.33156 7.64479 7.79729 8.24623 8.38998 8.97267 9.22835 9.85258 10.33628 11.31549 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002471 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.844488 B =11328.162572 C =12455.064516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.254 4.254 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.906 5.906 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.701 5.701 16 C 0.520 3.480 17 O -0.536 6.536 18 C 0.036 3.964 19 N -0.522 5.522 20 C 0.017 3.983 21 C 0.062 3.938 22 C -0.079 4.079 23 C -0.076 4.076 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.116 4.116 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.042 0.958 36 H -0.006 1.006 37 H 0.251 0.749 38 H 0.393 0.607 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.022 0.978 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -5.043 -17.351 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.551 5.551 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.351 5.351 16 C 0.305 3.695 17 O -0.414 6.414 18 C -0.095 4.095 19 N -0.246 5.246 20 C -0.130 4.130 21 C -0.066 4.066 22 C -0.116 4.116 23 C -0.077 4.077 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.013 0.987 37 H 0.061 0.939 38 H 0.227 0.773 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.927 -3.976 -17.465 19.588 hybrid contribution 1.776 -0.268 0.385 1.837 sum -6.151 -4.244 -17.080 18.643 Atomic orbital electron populations 1.22149 0.97021 1.00961 1.01623 1.21796 0.91540 0.99059 0.86378 0.89818 1.21195 0.85745 0.97177 0.94431 1.43869 0.99075 1.20827 1.68145 1.20830 0.94526 0.85070 0.97785 1.19123 0.94556 1.10524 1.14176 0.91543 1.25003 0.98881 0.99076 0.96368 1.70020 1.17188 1.45747 1.22103 0.86356 0.80309 0.80807 0.79179 1.21149 1.21732 1.20949 1.45758 1.66533 1.13603 1.09255 1.20168 0.77694 0.87392 0.84197 1.90604 1.50030 1.15791 1.84926 1.21964 1.01667 0.95193 0.90690 1.61671 1.49596 1.12735 1.00633 1.22600 0.91840 0.94859 1.03749 1.22085 0.99749 0.96077 0.88668 1.20623 1.03549 0.97549 0.89900 1.19941 0.93467 0.97889 0.96374 1.21117 0.96533 0.99761 0.96093 1.21153 0.99078 0.97886 0.95634 1.21134 0.93252 1.00175 1.00091 1.21146 0.96968 0.99516 0.96176 1.21107 0.99022 0.97850 0.95428 0.92269 0.92920 0.93318 0.92421 0.94102 0.95157 0.93934 0.98726 0.93917 0.77347 0.91616 0.88736 0.95907 0.91783 0.88903 0.94705 0.90841 0.89956 0.90689 0.86107 0.86206 0.86340 0.86206 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 4 C 0.14 2.75 5.33 -4.04 -0.02 2.73 16 5 N -0.60 -14.18 2.78 -181.12 -0.50 -14.68 16 6 C 0.16 3.71 7.61 59.85 0.46 4.17 16 7 C -0.25 -6.84 9.66 -15.06 -0.15 -6.98 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 10 N -0.91 -25.66 10.66 55.49 0.59 -25.07 16 11 Si 0.90 21.97 29.57 -169.99 -5.03 16.94 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 N -0.70 -12.63 4.41 -53.81 -0.24 -12.86 16 16 C 0.52 9.80 7.52 -10.98 -0.08 9.72 16 17 O -0.54 -11.89 13.98 5.56 0.08 -11.81 16 18 C 0.04 0.55 5.45 -4.97 -0.03 0.52 16 19 N -0.52 -7.80 4.50 -244.37 -1.10 -8.90 16 20 C 0.02 0.28 9.01 60.06 0.54 0.82 16 21 C 0.06 0.74 4.94 -3.82 -0.02 0.72 16 22 C -0.08 -0.84 5.28 -27.88 -0.15 -0.99 16 23 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 24 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 28 C -0.12 -1.09 9.70 -39.59 -0.38 -1.48 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 35 H 0.04 1.07 7.30 -51.93 -0.38 0.69 16 36 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.39 6.47 7.17 -40.82 -0.29 6.18 16 39 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.88 6.30 -51.93 -0.33 0.56 16 43 H 0.09 1.82 5.88 -51.93 -0.31 1.51 16 44 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 45 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 46 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 47 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 48 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 52 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -31.49 414.66 -10.89 -42.37 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.06 Total: 5.73 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.88 Total: 2.04 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.25 Total: -61.52 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.49 -10.89 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275647350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.238 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds