Wall clock time and date at job start Tue Mar 31 2020 17:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47184 * 2 1 4 4 C 1.52994 * 109.47007 * 120.00254 * 2 1 3 5 5 C 1.50700 * 109.47489 * 294.99972 * 4 2 1 6 6 O 1.21284 * 119.99808 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00082 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99856 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47175 * 325.00176 * 8 7 5 10 10 C 1.53006 * 109.47091 * 84.99798 * 8 7 5 11 11 C 1.52996 * 109.47450 * 204.99789 * 8 7 5 12 12 C 1.53040 * 109.46003 * 300.07021 * 11 8 7 13 13 C 1.53188 * 109.31716 * 178.61308 * 12 11 8 14 14 N 1.46930 * 108.77535 * 54.63317 * 13 12 11 15 15 C 1.36934 * 120.63148 * 126.41976 * 14 13 12 16 16 H 1.08002 * 119.99527 * 331.80981 * 15 14 13 17 17 C 1.38810 * 120.00285 * 151.81505 * 15 14 13 18 18 N 1.31615 * 119.99822 * 343.07262 * 17 15 14 19 19 Si 1.86803 * 120.00023 * 163.07190 * 17 15 14 20 20 H 1.48496 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46823 * 120.00255 * 19 17 15 22 22 H 1.48504 * 109.46804 * 239.99704 * 19 17 15 23 23 C 1.46924 * 118.73604 * 306.39360 * 14 13 12 24 24 C 1.53042 * 109.46278 * 180.02562 * 11 8 7 25 25 N 1.46503 * 109.47071 * 240.00351 * 2 1 3 26 26 C 1.36346 * 125.63259 * 299.69660 * 25 2 1 27 27 C 1.34849 * 108.21633 * 179.82979 * 26 25 2 28 28 C 1.40898 * 107.41509 * 0.42326 * 27 26 25 29 29 C 1.34846 * 107.41639 * 359.73583 * 28 27 26 30 30 H 1.09001 * 109.46998 * 299.99742 * 1 2 3 31 31 H 1.09001 * 109.46932 * 59.99594 * 1 2 3 32 32 H 1.08993 * 109.47675 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47084 * 55.00108 * 4 2 1 34 34 H 1.09000 * 109.47166 * 174.99521 * 4 2 1 35 35 H 0.96994 * 120.00538 * 359.97438 * 7 5 4 36 36 H 1.08998 * 109.47257 * 180.02562 * 10 8 7 37 37 H 1.09006 * 109.46982 * 300.00024 * 10 8 7 38 38 H 1.09000 * 109.46802 * 60.00150 * 10 8 7 39 39 H 1.09001 * 109.46255 * 60.02668 * 11 8 7 40 40 H 1.09004 * 109.49623 * 298.56565 * 12 11 8 41 41 H 1.09005 * 109.49843 * 58.66172 * 12 11 8 42 42 H 1.09004 * 109.58608 * 294.84980 * 13 12 11 43 43 H 1.08996 * 109.70986 * 174.49304 * 13 12 11 44 44 H 0.97006 * 120.00060 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.59176 * 293.81981 * 23 14 13 46 46 H 1.09007 * 109.58366 * 173.39512 * 23 14 13 47 47 H 1.08998 * 109.49712 * 301.33647 * 24 11 8 48 48 H 1.08999 * 109.49853 * 61.40256 * 24 11 8 49 49 H 1.07999 * 125.89117 * 359.95615 * 26 25 2 50 50 H 1.07998 * 126.29349 * 180.15703 * 27 26 25 51 51 H 1.07997 * 126.28859 * 179.73476 * 28 27 26 52 52 H 1.08008 * 125.88597 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 8 1.0117 1.0873 2.3633 7 7 1.9853 -0.3916 3.7001 8 6 1.5982 0.3652 4.8932 9 1 1.6294 1.4322 4.6726 10 6 0.1793 -0.0284 5.3088 11 6 2.5690 0.0516 6.0334 12 6 2.5263 -1.4468 6.3417 13 6 3.5246 -1.7627 7.4599 14 7 3.2313 -0.9008 8.6131 15 6 3.0300 -1.4414 9.8550 16 1 2.6378 -2.4431 9.9507 17 6 3.3300 -0.7020 10.9908 18 7 4.1022 0.3599 10.8998 19 14 2.6375 -1.2141 12.6485 20 1 1.8046 -2.4321 12.4821 21 1 3.7544 -1.5015 13.5840 22 1 1.8028 -0.1152 13.1970 23 6 3.1586 0.5524 8.4085 24 6 2.1641 0.8419 7.2798 25 7 2.0183 -0.6905 -1.1962 26 6 1.7655 -1.9901 -1.5220 27 6 2.3798 -2.2586 -2.6921 28 6 3.0440 -1.0844 -3.0988 29 6 2.8054 -0.1416 -2.1647 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7199 1.2950 34 1 3.1262 -0.7996 1.2055 35 1 2.4891 -1.2155 3.7907 36 1 -0.1089 0.5350 6.1962 37 1 -0.5124 0.1951 4.4965 38 1 0.1481 -1.0954 5.5294 39 1 3.5798 0.3325 5.7374 40 1 1.5218 -1.7239 6.6618 41 1 2.7920 -2.0101 5.4471 42 1 4.5387 -1.5713 7.1092 43 1 3.4304 -2.8085 7.7522 44 1 4.3122 0.8764 11.6937 45 1 4.1429 0.9326 8.1351 46 1 2.8204 1.0341 9.3260 47 1 2.1718 1.9080 7.0531 48 1 1.1629 0.5432 7.5906 49 1 1.1735 -2.6842 -0.9439 50 1 2.3686 -3.2016 -3.2184 51 1 3.6355 -0.9621 -3.9940 52 1 3.1746 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279164153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:59 Heat of formation + Delta-G solvation = 23.144768 kcal Electronic energy + Delta-G solvation = -28988.456424 eV Core-core repulsion = 25181.983990 eV Total energy + Delta-G solvation = -3806.472434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.50374 -40.15797 -38.26139 -35.71101 -34.99343 -33.00002 -31.39422 -30.17491 -29.78061 -29.06414 -28.90223 -27.97651 -25.48639 -23.76209 -22.91554 -22.34727 -20.96229 -20.61820 -20.30657 -19.62632 -18.72089 -17.91916 -16.90641 -16.58271 -16.20501 -15.63739 -14.99494 -14.80746 -14.61663 -14.43855 -14.08333 -13.85044 -13.74212 -13.63790 -13.28151 -13.15859 -13.02440 -12.74904 -12.54552 -12.47830 -12.28480 -12.24231 -12.03238 -11.73434 -11.68941 -11.48301 -11.44506 -11.29812 -10.95190 -10.75799 -10.49926 -10.21413 -10.14663 -10.09204 -9.88788 -9.56459 -9.46003 -9.08694 -8.82442 -8.50477 -8.35471 -6.70316 -5.82292 -3.24901 2.07483 2.42688 2.55395 2.87620 3.20537 3.34166 3.42415 3.44245 4.13170 4.39283 4.46300 4.54637 4.77254 4.84468 4.99912 5.02373 5.03519 5.09499 5.13657 5.27034 5.32619 5.35744 5.40975 5.47140 5.51641 5.59664 5.60248 5.66991 5.77327 5.89288 5.97379 6.04213 6.08788 6.09601 6.13826 6.20844 6.31889 6.36405 6.48124 6.57824 6.67728 6.71851 6.76592 6.80388 6.93562 7.05270 7.18333 7.33126 7.39168 7.62641 7.76544 8.05619 8.41927 9.18195 9.81657 10.38318 11.26155 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002005 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.683223 B =13963.241987 C =14269.047957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.106 0.894 4 C -0.154 4.154 5 C 0.518 3.482 6 O -0.542 6.542 7 N -0.718 5.718 8 C 0.145 3.855 9 H 0.084 0.916 10 C -0.162 4.162 11 C -0.085 4.085 12 C -0.128 4.128 13 C 0.145 3.855 14 N -0.591 5.591 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.171 3.829 24 C -0.134 4.134 25 N -0.443 5.443 26 C -0.015 4.015 27 C -0.204 4.204 28 C -0.205 4.205 29 C -0.015 4.015 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.015 0.985 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.157 0.843 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -2.250 -23.182 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.195 4.195 5 C 0.303 3.697 6 O -0.420 6.420 7 N -0.369 5.369 8 C 0.041 3.959 9 H 0.102 0.898 10 C -0.220 4.220 11 C -0.104 4.104 12 C -0.168 4.168 13 C 0.019 3.981 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.045 3.955 24 C -0.173 4.173 25 N -0.118 5.118 26 C -0.145 4.145 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.145 4.145 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.514 -1.232 -22.790 23.480 hybrid contribution 0.077 -0.689 0.889 1.127 sum -5.437 -1.921 -21.901 22.647 Atomic orbital electron populations 1.22283 0.92784 1.02812 1.04462 1.21088 0.96038 0.96633 0.81507 0.87581 1.22030 1.03917 1.00905 0.92631 1.20229 0.79355 0.85561 0.84554 1.90685 1.40146 1.24524 1.86651 1.46250 1.57056 1.27881 1.05749 1.21156 0.94754 0.96285 0.83696 0.89804 1.22221 0.95921 1.02265 1.01572 1.21323 0.97947 0.96989 0.94151 1.22118 1.01700 0.94547 0.98408 1.20879 0.94264 0.94892 0.88114 1.44045 1.81879 1.01498 1.04001 1.19210 1.35943 1.00499 0.82478 0.91717 1.25051 0.97952 0.98775 0.97929 1.70037 1.36543 1.19787 1.28326 0.86244 0.78512 0.77949 0.84198 1.20270 1.21737 1.21553 1.20772 0.94130 0.84680 0.95881 1.22261 1.01692 0.97547 0.95846 1.44372 1.39239 1.10110 1.18123 1.21734 1.06867 0.86190 0.99664 1.20888 1.04777 0.99341 0.97877 1.20885 1.06852 0.94001 1.01223 1.21865 1.01156 0.99820 0.91625 0.88580 0.91990 0.92367 0.88181 0.88103 0.76390 0.90993 0.93036 0.92118 0.91455 0.91682 0.93849 0.96695 0.92889 0.93674 0.96527 0.89422 0.93191 0.92042 0.82588 0.84990 0.84967 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 8.98 37.16 0.33 -1.08 16 2 C 0.15 1.26 2.67 -67.93 -0.18 1.08 16 3 H 0.11 0.96 7.88 -51.93 -0.41 0.55 16 4 C -0.15 -1.20 5.16 -27.89 -0.14 -1.34 16 5 C 0.52 5.52 7.51 -10.99 -0.08 5.44 16 6 O -0.54 -7.44 13.63 5.55 0.08 -7.36 16 7 N -0.72 -7.59 5.00 -53.80 -0.27 -7.86 16 8 C 0.14 1.86 2.40 -67.93 -0.16 1.70 16 9 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 10 C -0.16 -2.05 8.78 37.16 0.33 -1.73 16 11 C -0.08 -1.26 2.14 -90.58 -0.19 -1.46 16 12 C -0.13 -1.94 4.81 -26.61 -0.13 -2.07 16 13 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 14 N -0.59 -14.20 2.99 -172.32 -0.52 -14.71 16 15 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 19 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 24 C -0.13 -2.37 4.96 -26.61 -0.13 -2.50 16 25 N -0.44 -3.94 2.62 -110.02 -0.29 -4.23 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 27 C -0.20 -1.90 10.86 -39.78 -0.43 -2.34 16 28 C -0.20 -1.92 10.86 -39.78 -0.43 -2.36 16 29 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 33 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.56 6.84 -40.82 -0.28 3.28 16 36 H 0.07 0.95 6.46 -51.93 -0.34 0.62 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.76 6.46 -51.93 -0.34 0.42 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.03 6.51 -51.93 -0.34 0.69 16 41 H 0.04 0.52 6.46 -51.93 -0.34 0.19 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.28 6.06 -51.92 -0.31 1.96 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.11 6.51 -51.93 -0.34 0.77 16 49 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 51 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 52 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -30.62 399.68 -10.08 -40.70 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.83 Total: 3.79 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.87 Total: -7.49 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.45 Total: -51.98 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.62 -10.08 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279164153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.849 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds