Wall clock time and date at job start Tue Mar 31 2020 17:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.52996 * 109.46926 * 120.00059 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99671 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 N 1.46904 * 109.46892 * 179.97438 * 9 7 5 11 11 C 1.46896 * 110.99996 * 293.95444 * 10 9 7 12 12 C 1.46895 * 110.99959 * 169.99657 * 10 9 7 13 13 C 1.53007 * 109.47110 * 189.99980 * 12 10 9 14 14 C 1.50701 * 109.47113 * 180.02562 * 13 12 10 15 15 C 1.38239 * 119.99842 * 269.72696 * 14 13 12 16 16 C 1.38234 * 119.99710 * 179.76444 * 15 14 13 17 17 C 1.38237 * 120.00099 * 0.51053 * 16 15 14 18 18 C 1.38235 * 120.00038 * 359.74472 * 17 16 15 19 19 C 1.38232 * 119.99959 * 89.99790 * 14 13 12 20 20 N 1.46500 * 109.46982 * 239.99972 * 2 1 3 21 21 C 1.36942 * 119.99775 * 85.00284 * 20 2 1 22 22 H 1.07993 * 120.00158 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99402 * 179.97438 * 21 20 2 24 24 N 1.31609 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99270 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47412 * 60.00232 * 25 23 21 27 27 H 1.48505 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47440 * 299.99622 * 25 23 21 29 29 H 1.08999 * 109.47165 * 59.99911 * 1 2 3 30 30 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47149 * 300.00122 * 1 2 3 32 32 H 1.08997 * 109.47172 * 54.99909 * 4 2 1 33 33 H 1.08998 * 109.47554 * 294.99904 * 4 2 1 34 34 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 35 35 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 36 36 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 37 37 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 38 38 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 39 39 H 1.08997 * 109.47309 * 59.99680 * 11 10 9 40 40 H 1.09000 * 109.47355 * 179.97438 * 11 10 9 41 41 H 1.09004 * 109.47107 * 299.99475 * 11 10 9 42 42 H 1.09003 * 109.47202 * 309.99985 * 12 10 9 43 43 H 1.08997 * 109.47081 * 70.00259 * 12 10 9 44 44 H 1.08995 * 109.47326 * 300.00292 * 13 12 10 45 45 H 1.09004 * 109.46858 * 60.00508 * 13 12 10 46 46 H 1.07995 * 120.00135 * 359.97438 * 15 14 13 47 47 H 1.07998 * 119.99975 * 180.22551 * 16 15 14 48 48 H 1.07998 * 120.00311 * 179.72279 * 17 16 15 49 49 H 1.08002 * 120.00628 * 179.97438 * 18 17 16 50 50 H 1.07999 * 119.99739 * 0.02562 * 19 14 13 51 51 H 0.97006 * 120.00056 * 264.99959 * 20 2 1 52 52 H 0.97005 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1491 1.7156 8 8 3.7495 1.1138 2.2371 9 6 5.7694 0.0379 1.6607 10 7 6.3713 1.2186 2.2945 11 6 6.0824 2.4349 1.5231 12 6 7.8183 1.0399 2.4735 13 6 8.3666 2.1667 3.3515 14 6 9.8512 1.9837 3.5346 15 6 10.3302 1.2419 4.5982 16 6 11.6919 1.0700 4.7633 17 6 12.5749 1.6486 3.8709 18 6 12.0961 2.3947 2.8103 19 6 10.7342 2.5622 2.6421 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8919 1.0403 -2.4243 23 6 2.6123 -0.6618 -3.5090 24 7 2.9262 -1.9385 -3.4497 25 14 2.7914 0.2704 -5.1179 26 1 3.7466 1.3927 -4.9361 27 1 3.3014 -0.6477 -6.1678 28 1 1.4693 0.8072 -5.5289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 4.2821 -2.7689 1.3096 35 1 3.4756 -2.3723 -0.2268 36 1 5.0851 -1.7022 0.1325 37 1 6.0868 -0.8605 2.1901 38 1 6.0917 -0.0200 0.6212 39 1 5.0038 2.5809 1.4653 40 1 6.5391 3.2940 2.0146 41 1 6.4897 2.3325 0.5172 42 1 8.0093 0.0799 2.9530 43 1 8.3104 1.0647 1.5012 44 1 8.1757 3.1267 2.8720 45 1 7.8745 2.1418 4.3238 46 1 9.6406 0.7939 5.2982 47 1 12.0660 0.4874 5.5922 48 1 13.6388 1.5180 4.0025 49 1 12.7859 2.8472 2.1133 50 1 10.3601 3.1457 1.8139 51 1 2.2490 -1.6318 -1.1526 52 1 3.2502 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283681170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:19 Heat of formation + Delta-G solvation = 13.399778 kcal Electronic energy + Delta-G solvation = -28752.448258 eV Core-core repulsion = 24945.553249 eV Total energy + Delta-G solvation = -3806.895009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.83051 -39.45210 -37.32768 -36.03763 -34.16580 -33.26380 -32.06258 -31.12293 -29.38004 -28.74898 -27.95165 -26.74749 -25.75038 -24.54183 -23.48968 -22.80315 -21.94182 -20.73018 -20.11210 -18.70344 -17.29217 -17.06095 -16.77039 -16.00852 -15.84407 -15.53443 -15.38739 -14.87912 -14.63076 -14.46274 -14.22354 -13.72666 -13.65923 -13.54064 -13.15694 -13.00975 -12.94517 -12.62815 -12.51285 -12.25734 -12.09284 -11.97703 -11.78540 -11.62251 -11.43595 -11.39582 -11.30992 -11.21601 -11.12963 -10.84448 -10.82818 -10.69436 -10.36119 -10.08363 -9.64826 -9.34953 -9.16104 -8.94085 -8.90129 -8.26767 -8.07970 -6.95649 -5.79610 -3.05921 1.11020 1.16123 3.05559 3.29180 3.41819 3.46465 3.47613 3.55345 4.03389 4.58074 4.59752 4.67303 4.77137 4.85430 4.90949 4.93017 5.06958 5.27453 5.30712 5.33572 5.38852 5.44142 5.51123 5.54886 5.61926 5.63596 5.64887 5.68786 5.75200 5.79176 5.85715 5.88221 5.92399 5.96835 6.15976 6.22922 6.27282 6.28795 6.29249 6.34564 6.38546 6.43295 6.71425 6.76986 6.83324 6.87023 6.97678 7.07374 7.19663 7.69504 7.85704 8.40644 8.65077 9.51418 10.08124 10.43924 11.43408 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002426 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.140885 B =11537.765141 C =12679.160240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.081 3.919 7 C 0.518 3.482 8 O -0.534 6.534 9 C 0.038 3.962 10 N -0.524 5.524 11 C 0.016 3.984 12 C 0.062 3.938 13 C -0.078 4.078 14 C -0.077 4.077 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.117 4.117 20 N -0.720 5.720 21 C -0.230 4.230 22 H 0.067 0.933 23 C -0.014 4.014 24 N -0.937 5.937 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.381 0.619 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.868 3.209 15.751 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.011 4.011 5 N -0.329 5.329 6 C -0.062 4.062 7 C 0.305 3.695 8 O -0.412 6.412 9 C -0.093 4.093 10 N -0.248 5.248 11 C -0.132 4.132 12 C -0.066 4.066 13 C -0.116 4.116 14 C -0.078 4.078 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.137 4.137 19 C -0.135 4.135 20 N -0.363 5.363 21 C -0.361 4.361 22 H 0.085 0.915 23 C -0.210 4.210 24 N -0.586 5.586 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.389 3.875 16.341 22.115 hybrid contribution 0.624 -0.083 -2.017 2.113 sum 15.013 3.792 14.324 21.093 Atomic orbital electron populations 1.22368 0.98863 1.00806 1.00242 1.20659 0.91913 0.96261 0.86776 0.93151 1.21801 0.78966 1.01032 0.99337 1.47601 1.06642 1.21481 1.57214 1.21880 0.99677 0.87091 0.97602 1.20269 0.88800 0.82454 0.77975 1.90614 1.74771 1.30937 1.44838 1.21998 0.93086 0.94793 0.99410 1.61660 1.10550 1.02429 1.50165 1.22612 1.04338 0.91697 0.94546 1.22094 0.87152 0.98887 0.98456 1.20617 0.90177 0.99165 1.01611 1.19927 0.95599 0.97237 0.95024 1.21110 0.95517 0.98859 0.97893 1.21155 0.93445 0.99842 0.99337 1.21143 0.99608 0.98379 0.95453 1.21156 0.95502 0.99038 0.98048 1.21109 0.93197 1.00115 0.99092 1.42472 1.78183 1.10395 1.05263 1.19187 1.35805 0.93774 0.87326 0.91507 1.24655 1.02508 0.95982 0.97833 1.69611 1.51474 1.08569 1.28924 0.86314 0.77779 0.78602 0.83791 1.21477 1.21765 1.21371 0.92642 0.93497 0.94294 0.91114 0.90196 0.93660 0.89025 0.91558 0.88365 0.91603 0.89043 0.91534 0.95992 0.90718 0.94639 0.90702 0.89917 0.85929 0.86171 0.86307 0.86188 0.86130 0.78378 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.49 37.16 0.35 -2.60 16 2 C 0.15 3.13 3.20 -67.93 -0.22 2.91 16 3 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 4 C 0.11 1.92 5.05 -4.04 -0.02 1.90 16 5 N -0.60 -10.07 2.73 -181.57 -0.50 -10.57 16 6 C 0.08 1.23 9.86 59.85 0.59 1.82 16 7 C 0.52 8.96 7.39 -10.98 -0.08 8.88 16 8 O -0.53 -10.69 13.90 5.56 0.08 -10.61 16 9 C 0.04 0.54 4.01 -4.98 -0.02 0.52 16 10 N -0.52 -7.13 4.50 -244.37 -1.10 -8.23 16 11 C 0.02 0.22 9.01 60.06 0.54 0.76 16 12 C 0.06 0.68 4.94 -3.82 -0.02 0.66 16 13 C -0.08 -0.76 5.28 -27.88 -0.15 -0.91 16 14 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 15 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 16 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 17 C -0.13 -1.03 10.05 -39.58 -0.40 -1.42 16 18 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 19 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 20 N -0.72 -17.20 4.57 -53.43 -0.24 -17.44 16 21 C -0.23 -6.22 9.93 -15.05 -0.15 -6.37 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.94 -26.89 13.06 55.49 0.72 -26.16 16 25 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 33 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.65 5.62 -51.93 -0.29 1.35 16 36 H 0.07 0.98 6.44 -51.92 -0.33 0.64 16 37 H 0.10 1.16 7.90 -51.93 -0.41 0.75 16 38 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 39 H 0.09 1.56 5.89 -51.93 -0.31 1.25 16 40 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 43 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 44 H 0.07 0.73 6.42 -51.93 -0.33 0.39 16 45 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 51 H 0.38 9.32 5.33 -40.82 -0.22 9.10 16 52 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 414.08 15.07 6.24 6.24 Total: -1.00 -31.30 414.08 -10.44 -41.73 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.85 Total: 9.14 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.76 Total: -1.28 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -1.11 Total: -62.40 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.30 -10.44 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283681170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.135 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds