Wall clock time and date at job start Tue Mar 31 2020 17:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.52996 * 109.46926 * 120.00059 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99671 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 N 1.46904 * 109.46892 * 179.97438 * 9 7 5 11 11 C 1.46896 * 110.99996 * 293.95444 * 10 9 7 12 12 C 1.46895 * 110.99959 * 169.99657 * 10 9 7 13 13 C 1.53007 * 109.47110 * 189.99980 * 12 10 9 14 14 C 1.50701 * 109.47113 * 180.02562 * 13 12 10 15 15 C 1.38239 * 119.99842 * 269.72696 * 14 13 12 16 16 C 1.38234 * 119.99710 * 179.76444 * 15 14 13 17 17 C 1.38237 * 120.00099 * 0.51053 * 16 15 14 18 18 C 1.38235 * 120.00038 * 359.74472 * 17 16 15 19 19 C 1.38232 * 119.99959 * 89.99790 * 14 13 12 20 20 N 1.46500 * 109.46982 * 239.99972 * 2 1 3 21 21 C 1.36942 * 119.99775 * 85.00284 * 20 2 1 22 22 H 1.07993 * 120.00158 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99402 * 179.97438 * 21 20 2 24 24 N 1.31609 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99270 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47412 * 60.00232 * 25 23 21 27 27 H 1.48505 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47440 * 299.99622 * 25 23 21 29 29 H 1.08999 * 109.47165 * 59.99911 * 1 2 3 30 30 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47149 * 300.00122 * 1 2 3 32 32 H 1.08997 * 109.47172 * 54.99909 * 4 2 1 33 33 H 1.08998 * 109.47554 * 294.99904 * 4 2 1 34 34 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 35 35 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 36 36 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 37 37 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 38 38 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 39 39 H 1.08997 * 109.47309 * 59.99680 * 11 10 9 40 40 H 1.09000 * 109.47355 * 179.97438 * 11 10 9 41 41 H 1.09004 * 109.47107 * 299.99475 * 11 10 9 42 42 H 1.09003 * 109.47202 * 309.99985 * 12 10 9 43 43 H 1.08997 * 109.47081 * 70.00259 * 12 10 9 44 44 H 1.08995 * 109.47326 * 300.00292 * 13 12 10 45 45 H 1.09004 * 109.46858 * 60.00508 * 13 12 10 46 46 H 1.07995 * 120.00135 * 359.97438 * 15 14 13 47 47 H 1.07998 * 119.99975 * 180.22551 * 16 15 14 48 48 H 1.07998 * 120.00311 * 179.72279 * 17 16 15 49 49 H 1.08002 * 120.00628 * 179.97438 * 18 17 16 50 50 H 1.07999 * 119.99739 * 0.02562 * 19 14 13 51 51 H 0.97006 * 120.00056 * 264.99959 * 20 2 1 52 52 H 0.97005 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1491 1.7156 8 8 3.7495 1.1138 2.2371 9 6 5.7694 0.0379 1.6607 10 7 6.3713 1.2186 2.2945 11 6 6.0824 2.4349 1.5231 12 6 7.8183 1.0399 2.4735 13 6 8.3666 2.1667 3.3515 14 6 9.8512 1.9837 3.5346 15 6 10.3302 1.2419 4.5982 16 6 11.6919 1.0700 4.7633 17 6 12.5749 1.6486 3.8709 18 6 12.0961 2.3947 2.8103 19 6 10.7342 2.5622 2.6421 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8919 1.0403 -2.4243 23 6 2.6123 -0.6618 -3.5090 24 7 2.9262 -1.9385 -3.4497 25 14 2.7914 0.2704 -5.1179 26 1 3.7466 1.3927 -4.9361 27 1 3.3014 -0.6477 -6.1678 28 1 1.4693 0.8072 -5.5289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 4.2821 -2.7689 1.3096 35 1 3.4756 -2.3723 -0.2268 36 1 5.0851 -1.7022 0.1325 37 1 6.0868 -0.8605 2.1901 38 1 6.0917 -0.0200 0.6212 39 1 5.0038 2.5809 1.4653 40 1 6.5391 3.2940 2.0146 41 1 6.4897 2.3325 0.5172 42 1 8.0093 0.0799 2.9530 43 1 8.3104 1.0647 1.5012 44 1 8.1757 3.1267 2.8720 45 1 7.8745 2.1418 4.3238 46 1 9.6406 0.7939 5.2982 47 1 12.0660 0.4874 5.5922 48 1 13.6388 1.5180 4.0025 49 1 12.7859 2.8472 2.1133 50 1 10.3601 3.1457 1.8139 51 1 2.2490 -1.6318 -1.1526 52 1 3.2502 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283681170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:18 Heat of formation + Delta-G solvation = -4.237641 kcal Electronic energy + Delta-G solvation = -28753.213073 eV Core-core repulsion = 24945.553249 eV Total energy + Delta-G solvation = -3807.659824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07591 -40.19363 -38.50367 -37.50188 -35.75799 -34.14838 -33.85195 -31.73685 -30.87861 -30.05107 -29.03158 -28.07165 -26.96427 -25.94520 -25.16462 -23.42469 -22.86622 -21.74099 -21.48434 -20.07038 -19.26933 -18.08852 -17.72142 -17.16192 -17.00073 -16.71082 -16.36564 -16.29558 -15.75549 -15.70057 -15.44691 -15.24593 -15.10607 -14.30944 -14.17411 -14.10219 -13.89192 -13.75896 -13.72949 -13.65545 -13.54469 -13.20389 -13.07017 -12.87583 -12.79987 -12.73836 -12.62613 -12.53868 -12.42223 -12.21893 -12.05574 -11.85075 -11.82094 -11.61867 -11.59927 -10.98507 -10.66854 -9.79176 -9.58984 -9.49852 -9.33638 -8.93547 -7.92483 -5.17427 0.46535 0.53096 1.45591 1.46056 1.52254 1.71291 2.07315 2.55950 2.84212 3.02069 3.40953 3.62813 3.89189 3.91159 3.97942 4.07289 4.13680 4.20075 4.22059 4.27516 4.30639 4.34265 4.39217 4.46769 4.53532 4.55669 4.64822 4.65333 4.68926 4.70213 4.72211 4.75285 4.90846 4.95315 4.99390 5.02888 5.11601 5.19609 5.21856 5.26304 5.27112 5.40771 5.52256 5.60869 5.66025 5.70668 5.75922 5.87640 6.04812 6.16458 6.30654 6.54208 7.30729 7.38269 8.11745 8.40467 9.29813 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002426 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.140885 B =11537.765141 C =12679.160240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.020 0.980 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.084 3.916 7 C 0.510 3.490 8 O -0.567 6.567 9 C 0.044 3.956 10 N -0.532 5.532 11 C 0.022 3.978 12 C 0.067 3.933 13 C -0.070 4.070 14 C -0.089 4.089 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.133 4.133 18 C -0.129 4.129 19 C -0.132 4.132 20 N -0.723 5.723 21 C -0.233 4.233 22 H 0.058 0.942 23 C -0.064 4.064 24 N -0.959 5.959 25 Si 0.959 3.041 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.018 0.982 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.135 0.865 50 H 0.124 0.876 51 H 0.378 0.622 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.137 2.660 16.848 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.038 0.962 4 C -0.005 4.005 5 N -0.333 5.333 6 C -0.058 4.058 7 C 0.298 3.702 8 O -0.446 6.446 9 C -0.087 4.087 10 N -0.257 5.257 11 C -0.126 4.126 12 C -0.060 4.060 13 C -0.107 4.107 14 C -0.090 4.090 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.150 4.150 20 N -0.367 5.367 21 C -0.365 4.365 22 H 0.076 0.924 23 C -0.257 4.257 24 N -0.609 5.609 25 Si 0.789 3.211 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.211 1.211 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.036 0.964 42 H 0.104 0.896 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.150 0.850 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.153 0.847 50 H 0.142 0.858 51 H 0.214 0.786 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.654 3.330 17.457 23.683 hybrid contribution 0.241 0.122 -2.295 2.311 sum 15.895 3.452 15.162 22.236 Atomic orbital electron populations 1.22216 0.96977 1.01462 1.00626 1.20772 0.93193 0.94706 0.86978 0.96188 1.21703 0.79522 1.01742 0.97556 1.47738 1.06588 1.21956 1.56974 1.21910 0.98799 0.87279 0.97855 1.20873 0.90180 0.81820 0.77306 1.90597 1.75623 1.32059 1.46360 1.21998 0.90817 0.96183 0.99693 1.61669 1.12276 1.01928 1.49781 1.22482 1.02253 0.92991 0.94844 1.22123 0.85267 0.99963 0.98696 1.20507 0.90576 0.98537 1.01101 1.19938 0.95246 0.98099 0.95711 1.21311 0.96259 0.98886 0.97927 1.21457 0.93223 0.99795 0.99909 1.21469 1.00812 0.97781 0.95058 1.21424 0.95492 0.99141 0.98614 1.21276 0.93790 1.00528 0.99393 1.42531 1.78405 1.10260 1.05466 1.19377 1.34923 0.93591 0.88653 0.92380 1.25267 1.03165 0.96847 1.00407 1.69728 1.52490 1.09482 1.29235 0.85438 0.77613 0.77467 0.80572 1.21280 1.21841 1.21079 0.94654 0.92632 0.91500 0.89034 0.89701 0.89930 0.91769 0.91342 0.85548 0.92002 0.92262 0.89758 0.96351 0.89579 0.94817 0.90996 0.90149 0.85011 0.84222 0.84285 0.84664 0.85843 0.78639 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.49 71.98 0.68 -4.76 16 2 C 0.15 6.21 3.20 44.99 0.14 6.35 16 3 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 4 C 0.12 3.95 5.05 86.38 0.44 4.39 16 5 N -0.60 -19.79 2.73 -846.76 -2.31 -22.10 16 6 C 0.08 2.46 9.86 127.77 1.26 3.72 16 7 C 0.51 17.45 7.39 87.65 0.65 18.10 16 8 O -0.57 -22.91 13.90 -3.04 -0.04 -22.96 16 9 C 0.04 1.19 4.01 85.56 0.34 1.53 16 10 N -0.53 -14.10 4.50 -927.06 -4.17 -18.27 16 11 C 0.02 0.64 9.01 127.69 1.15 1.79 16 12 C 0.07 1.37 4.94 86.31 0.43 1.80 16 13 C -0.07 -1.29 5.28 29.85 0.16 -1.13 16 14 C -0.09 -1.60 5.13 -19.87 -0.10 -1.70 16 15 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 16 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 17 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 18 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 19 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 20 N -0.72 -34.87 4.57 -322.94 -1.47 -36.34 16 21 C -0.23 -12.80 9.93 84.03 0.83 -11.97 16 22 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 23 C -0.06 -3.56 5.50 84.87 0.47 -3.10 16 24 N -0.96 -55.30 13.06 21.65 0.28 -55.01 16 25 Si 0.96 45.87 29.55 68.60 2.03 47.90 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 33 H 0.08 2.77 7.42 -2.39 -0.02 2.76 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.27 5.62 -2.39 -0.01 2.26 16 36 H 0.07 1.95 6.44 -2.38 -0.02 1.93 16 37 H 0.13 2.68 7.90 -2.39 -0.02 2.66 16 38 H 0.06 1.75 7.37 -2.39 -0.02 1.73 16 39 H 0.06 2.09 5.89 -2.39 -0.01 2.08 16 40 H 0.08 2.04 6.30 -2.39 -0.02 2.02 16 41 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.09 1.58 7.93 -2.39 -0.02 1.56 16 43 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 44 H 0.07 1.35 6.42 -2.39 -0.02 1.34 16 45 H 0.08 1.52 8.08 -2.38 -0.02 1.50 16 46 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 49 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 50 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.38 18.63 5.33 -92.70 -0.49 18.13 16 52 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -67.41 414.08 2.26 -65.15 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.40 Total: 35.54 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.55 Total: 6.10 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -7.67 Total: -131.73 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -67.41 2.26 -65.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283681170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.911 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds