Wall clock time and date at job start Tue Mar 31 2020 17:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 5 11 11 C 1.46904 * 110.99974 * 293.95163 * 10 9 7 12 12 C 1.46899 * 110.99859 * 169.99991 * 10 9 7 13 13 C 1.53008 * 109.46771 * 189.99943 * 12 10 9 14 14 C 1.50703 * 109.46707 * 179.97438 * 13 12 10 15 15 C 1.38228 * 120.00132 * 269.72619 * 14 13 12 16 16 C 1.38240 * 119.99947 * 179.76723 * 15 14 13 17 17 C 1.38234 * 120.00070 * 0.51257 * 16 15 14 18 18 C 1.38234 * 119.99804 * 359.73817 * 17 16 15 19 19 C 1.38237 * 119.99614 * 90.00143 * 14 13 12 20 20 N 1.46508 * 109.47068 * 119.99937 * 2 1 3 21 21 C 1.36932 * 119.99887 * 275.00166 * 20 2 1 22 22 H 1.07998 * 120.00231 * 359.97438 * 21 20 2 23 23 C 1.38818 * 119.99759 * 179.97438 * 21 20 2 24 24 N 1.31610 * 119.99998 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99880 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47163 * 120.00221 * 25 23 21 28 28 H 1.48497 * 109.47238 * 240.00228 * 25 23 21 29 29 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 30 30 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 32 32 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 33 33 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 34 34 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 35 35 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 36 36 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 39 39 H 1.09006 * 109.47051 * 60.00294 * 11 10 9 40 40 H 1.08999 * 109.47192 * 179.97438 * 11 10 9 41 41 H 1.08994 * 109.47359 * 300.00203 * 11 10 9 42 42 H 1.09000 * 109.47534 * 309.99732 * 12 10 9 43 43 H 1.09000 * 109.47043 * 70.00405 * 12 10 9 44 44 H 1.08995 * 109.46883 * 299.99672 * 13 12 10 45 45 H 1.09000 * 109.46959 * 60.00411 * 13 12 10 46 46 H 1.08007 * 119.99945 * 0.02562 * 15 14 13 47 47 H 1.07999 * 119.99739 * 180.22607 * 16 15 14 48 48 H 1.07993 * 120.00177 * 179.72075 * 17 16 15 49 49 H 1.07995 * 120.00093 * 179.97438 * 18 17 16 50 50 H 1.08000 * 120.00276 * 0.02562 * 19 14 13 51 51 H 0.96999 * 119.99378 * 94.99936 * 20 2 1 52 52 H 0.96998 * 120.00138 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 7 5.9518 -3.2597 0.1186 11 6 5.5513 -3.2349 1.5318 12 6 7.3912 -3.5203 -0.0162 13 6 7.7013 -4.9359 0.4750 14 6 9.1778 -5.2035 0.3361 15 6 9.6737 -5.7545 -0.8306 16 6 11.0288 -5.9955 -0.9598 17 6 11.8866 -5.6952 0.0818 18 6 11.3900 -5.1490 1.2505 19 6 10.0356 -4.9031 1.3778 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8926 1.0405 2.4242 23 6 2.6113 -0.6620 3.5093 24 7 2.9243 -1.9390 3.4502 25 14 2.7903 0.2700 5.1183 26 1 2.3775 1.6827 4.9205 27 1 1.9292 -0.3577 6.1524 28 1 4.2071 0.2262 5.5607 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5381 0.0038 -2.8129 35 1 3.8114 1.1849 -1.6971 36 1 5.2745 0.2915 -1.2182 37 1 5.9791 -2.0106 -1.5699 38 1 5.9847 -1.1625 -0.0050 39 1 4.4707 -3.1102 1.6011 40 1 5.8398 -4.1721 2.0077 41 1 6.0459 -2.4041 2.0351 42 1 7.6809 -3.4274 -1.0628 43 1 7.9486 -2.7984 0.5807 44 1 7.4117 -5.0288 1.5217 45 1 7.1439 -5.6578 -0.1218 46 1 9.0029 -5.9929 -1.6429 47 1 11.4166 -6.4226 -1.8727 48 1 12.9446 -5.8876 -0.0174 49 1 12.0601 -4.9148 2.0645 50 1 9.6476 -4.4771 2.2912 51 1 2.2490 -1.6318 1.1526 52 1 3.2469 -2.3965 4.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283681171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:22 Heat of formation + Delta-G solvation = -4.599795 kcal Electronic energy + Delta-G solvation = -29473.642466 eV Core-core repulsion = 25665.966937 eV Total energy + Delta-G solvation = -3807.675529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96840 -40.19037 -38.35121 -37.18705 -35.87017 -34.09300 -33.74617 -31.74164 -30.71179 -29.98159 -28.92734 -28.04508 -26.77721 -25.80943 -25.22954 -23.42426 -22.80400 -21.54456 -21.43594 -19.99759 -19.17381 -17.93051 -17.68369 -17.09690 -16.94571 -16.53628 -16.44102 -16.23052 -15.69402 -15.60780 -15.38803 -15.16624 -14.73289 -14.32128 -14.17104 -14.05860 -13.85134 -13.76749 -13.68856 -13.51709 -13.46432 -13.21950 -12.96442 -12.85653 -12.81329 -12.71541 -12.51714 -12.43932 -12.25906 -12.08270 -12.03638 -11.82723 -11.76569 -11.60759 -11.52040 -10.90081 -10.48820 -9.79635 -9.58517 -9.35037 -9.25360 -8.82144 -7.77097 -5.05490 0.46457 0.52574 1.43569 1.45051 1.53511 1.91289 2.21941 2.59933 2.87077 3.08330 3.50358 3.76059 3.90426 3.97372 4.06476 4.12448 4.20618 4.22561 4.24863 4.29894 4.34371 4.36220 4.46026 4.56960 4.58187 4.60817 4.67003 4.68452 4.70699 4.74195 4.76029 4.83071 4.96276 4.97793 5.00719 5.05995 5.12162 5.20684 5.22656 5.30783 5.50912 5.54651 5.60587 5.61597 5.65074 5.77025 5.86095 5.96350 6.15252 6.18037 6.40449 6.67871 7.46030 7.57913 8.33304 8.59309 9.42115 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002981 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.744203 B = 9389.384192 C =10989.481706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.044 0.956 4 C 0.118 3.882 5 N -0.614 5.614 6 C 0.077 3.923 7 C 0.510 3.490 8 O -0.551 6.551 9 C 0.048 3.952 10 N -0.530 5.530 11 C 0.033 3.967 12 C 0.069 3.931 13 C -0.072 4.072 14 C -0.088 4.088 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.135 4.135 20 N -0.735 5.735 21 C -0.235 4.235 22 H 0.064 0.936 23 C -0.069 4.069 24 N -0.943 5.943 25 Si 0.956 3.044 26 H -0.271 1.271 27 H -0.300 1.300 28 H -0.298 1.298 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.061 0.939 41 H -0.001 1.001 42 H 0.093 0.907 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.133 0.867 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.136 0.864 50 H 0.116 0.884 51 H 0.387 0.613 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.770 -1.538 -15.210 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.062 0.938 4 C -0.006 4.006 5 N -0.348 5.348 6 C -0.065 4.065 7 C 0.299 3.701 8 O -0.427 6.427 9 C -0.083 4.083 10 N -0.254 5.254 11 C -0.115 4.115 12 C -0.058 4.058 13 C -0.110 4.110 14 C -0.088 4.088 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.153 4.153 20 N -0.380 5.380 21 C -0.368 4.368 22 H 0.082 0.918 23 C -0.263 4.263 24 N -0.593 5.593 25 Si 0.788 3.212 26 H -0.196 1.196 27 H -0.228 1.228 28 H -0.226 1.226 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.148 0.852 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.017 0.983 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.161 0.839 49 H 0.154 0.846 50 H 0.134 0.866 51 H 0.224 0.776 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.161 -2.239 -15.091 21.508 hybrid contribution 0.204 0.821 2.144 2.305 sum 15.365 -1.418 -12.947 20.142 Atomic orbital electron populations 1.22253 0.97774 1.00411 1.00968 1.20958 0.92894 0.95441 0.87231 0.93755 1.21723 0.79808 1.00983 0.98044 1.47744 1.06872 1.21479 1.58680 1.21967 0.95113 0.90378 0.99034 1.20787 0.91026 0.81435 0.76891 1.90634 1.65288 1.41472 1.45353 1.21969 0.92320 0.92047 1.01937 1.61711 1.16285 1.33297 1.14126 1.22384 1.03560 0.98589 0.86939 1.22107 0.86017 0.95863 1.01859 1.20507 0.91764 0.96868 1.01843 1.19904 0.94995 0.99063 0.94858 1.21299 0.96349 0.99323 0.97258 1.21471 0.93158 0.99648 0.99792 1.21475 1.00939 0.99085 0.93401 1.21404 0.95075 0.99201 0.98820 1.21251 0.94286 1.00945 0.98858 1.42958 1.77965 1.11473 1.05643 1.19512 1.34843 0.93630 0.88797 0.91755 1.25374 1.03694 0.96798 1.00400 1.69891 1.51963 1.09381 1.28028 0.85319 0.76432 0.78180 0.81300 1.19602 1.22762 1.22566 0.90273 0.94744 0.94786 0.86590 0.92612 0.89859 0.90278 0.91313 0.85221 0.92495 0.89957 0.92005 0.98285 0.88915 0.95372 0.92180 0.90253 0.84884 0.83818 0.83921 0.84635 0.86612 0.77644 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.49 71.98 0.68 -4.83 16 2 C 0.14 5.73 3.20 44.99 0.14 5.87 16 3 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 4 C 0.12 3.84 5.14 86.38 0.44 4.29 16 5 N -0.61 -19.60 2.77 -846.78 -2.35 -21.95 16 6 C 0.08 1.62 10.24 127.77 1.31 2.93 16 7 C 0.51 19.68 6.70 87.65 0.59 20.26 16 8 O -0.55 -26.89 11.61 -3.04 -0.04 -26.92 16 9 C 0.05 1.50 4.00 85.55 0.34 1.85 16 10 N -0.53 -18.06 4.50 -927.03 -4.17 -22.23 16 11 C 0.03 1.41 9.01 127.69 1.15 2.56 16 12 C 0.07 1.81 4.94 86.31 0.43 2.24 16 13 C -0.07 -1.83 5.28 29.85 0.16 -1.67 16 14 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 15 C -0.12 -2.37 9.70 22.27 0.22 -2.16 16 16 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 17 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 18 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 19 C -0.14 -2.98 9.70 22.27 0.22 -2.77 16 20 N -0.74 -38.48 4.52 -322.93 -1.46 -39.94 16 21 C -0.24 -13.40 9.93 84.04 0.83 -12.57 16 22 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.94 -58.68 12.76 21.65 0.28 -58.41 16 25 Si 0.96 47.71 29.55 68.60 2.03 49.74 16 26 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.12 2.65 8.07 -2.39 -0.02 2.63 16 33 H 0.06 2.09 7.42 -2.39 -0.02 2.07 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.51 8.07 -2.39 -0.02 1.49 16 36 H 0.07 1.41 6.44 -2.38 -0.02 1.39 16 37 H 0.13 2.95 7.90 -2.39 -0.02 2.93 16 38 H 0.06 1.81 7.38 -2.39 -0.02 1.79 16 39 H 0.08 4.33 5.58 -2.38 -0.01 4.32 16 40 H 0.06 2.44 6.30 -2.39 -0.02 2.43 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.09 2.01 7.93 -2.39 -0.02 2.00 16 43 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 44 H 0.06 1.69 6.42 -2.39 -0.02 1.68 16 45 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 46 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 47 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 48 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 49 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 50 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 51 H 0.39 22.38 5.01 -92.71 -0.46 21.92 16 52 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.92 413.10 2.25 -73.66 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.42 Total: 41.45 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 7.55 Total: 4.60 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -7.71 Total: -142.53 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -75.92 2.25 -73.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283681171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.065 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds