Wall clock time and date at job start Tue Mar 31 2020 18:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46655 * 2 1 4 4 C 1.36450 * 124.84634 * 270.01865 * 3 2 1 5 5 C 1.50699 * 125.57295 * 359.94721 * 4 3 2 6 6 C 1.34488 * 108.85229 * 179.73214 * 4 3 2 7 7 C 1.46683 * 106.33414 * 0.37829 * 6 4 3 8 8 C 1.47264 * 126.94462 * 179.88779 * 7 6 4 9 9 O 1.21625 * 120.00075 * 179.68427 * 8 7 6 10 10 N 1.34774 * 119.99836 * 359.68923 * 8 7 6 11 11 C 1.46501 * 120.00071 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.43268 * 325.69603 * 11 10 8 13 13 C 1.54894 * 110.48440 * 88.23781 * 11 10 8 14 14 C 1.55238 * 102.58338 * 156.67708 * 13 11 10 15 15 C 1.54266 * 104.23333 * 322.08174 * 14 13 11 16 16 H 1.08999 * 110.03060 * 264.32313 * 15 14 13 17 17 C 1.53009 * 110.07226 * 142.91908 * 15 14 13 18 18 N 1.46498 * 109.46985 * 67.80965 * 17 15 14 19 19 C 1.36941 * 119.99699 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99775 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00039 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00007 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47174 * 90.00149 * 23 21 19 25 25 H 1.48500 * 109.46820 * 209.99966 * 23 21 19 26 26 H 1.48494 * 109.47022 * 330.00008 * 23 21 19 27 27 C 1.53869 * 106.59800 * 23.61579 * 15 14 13 28 28 C 1.34650 * 124.85303 * 90.00078 * 3 2 1 29 29 C 1.50704 * 125.80058 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47410 * 300.00245 * 1 2 3 32 32 H 1.08996 * 109.47037 * 60.00742 * 1 2 3 33 33 H 1.08994 * 109.47410 * 239.99755 * 2 1 3 34 34 H 1.08996 * 109.46768 * 119.99737 * 2 1 3 35 35 H 1.08994 * 109.47104 * 89.99999 * 5 4 3 36 36 H 1.09003 * 109.47135 * 209.99948 * 5 4 3 37 37 H 1.08997 * 109.47337 * 329.99980 * 5 4 3 38 38 H 1.07998 * 126.83106 * 180.24990 * 6 4 3 39 39 H 0.97000 * 120.00069 * 359.97438 * 10 8 7 40 40 H 1.08996 * 110.75388 * 275.06061 * 13 11 10 41 41 H 1.08993 * 110.76071 * 38.44287 * 13 11 10 42 42 H 1.09005 * 110.46917 * 203.39204 * 14 13 11 43 43 H 1.09007 * 110.58541 * 80.83124 * 14 13 11 44 44 H 1.08993 * 109.47258 * 187.81041 * 17 15 14 45 45 H 1.08995 * 109.47197 * 307.81092 * 17 15 14 46 46 H 0.96998 * 120.00289 * 359.97438 * 18 17 15 47 47 H 0.96999 * 120.00502 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.02983 * 240.71432 * 27 15 14 49 49 H 1.08996 * 110.07773 * 119.30576 * 27 15 14 50 50 H 1.09003 * 109.47085 * 270.00024 * 29 28 3 51 51 H 1.08995 * 109.47161 * 29.99867 * 29 28 3 52 52 H 1.09002 * 109.46912 * 150.00304 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2778 2.1165 -1.1198 5 6 2.1101 1.6401 -2.5397 6 6 2.7031 3.3373 -0.7493 7 6 2.7115 3.3436 0.7175 8 6 3.1047 4.4586 1.5956 9 8 3.0576 4.3268 2.8038 10 7 3.5165 5.6249 1.0604 11 6 3.9071 6.7342 1.9339 12 1 3.2978 6.7396 2.8377 13 6 5.4105 6.6372 2.2941 14 6 5.7669 8.1041 2.6561 15 6 4.9620 8.9499 1.6479 16 1 5.5883 9.2094 0.7943 17 6 4.4450 10.2214 2.3239 18 7 5.5747 11.0957 2.6487 19 6 5.3543 12.2992 3.2637 20 1 4.3477 12.6040 3.5090 21 6 6.4248 13.1274 3.5720 22 7 6.2130 14.2843 4.1626 23 14 8.1661 12.5999 3.1484 24 1 8.5102 13.0774 1.7850 25 1 9.1133 13.1845 4.1314 26 1 8.2589 11.1185 3.1921 27 6 3.7795 8.0790 1.1887 28 6 2.2747 2.1068 1.1050 29 6 2.1079 1.6362 2.5269 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.1005 1.8670 -2.8822 36 1 2.8332 2.1451 -3.1802 37 1 2.2753 0.5636 -2.5837 38 1 2.9847 4.1505 -1.4018 39 1 3.5543 5.7298 0.0969 40 1 5.5610 5.9782 3.1491 41 1 5.9921 6.2985 1.4367 42 1 6.8358 8.2782 2.5325 43 1 5.4597 8.3325 3.6767 44 1 3.7656 10.7414 1.6486 45 1 3.9155 9.9568 3.2391 46 1 6.4788 10.8218 2.4287 47 1 6.9610 14.8629 4.3784 48 1 3.8319 7.9157 0.1123 49 1 2.8369 8.5612 1.4476 50 1 1.0988 1.8656 2.8695 51 1 2.2719 0.5598 2.5750 52 1 2.8321 2.1431 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284191617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:53 Heat of formation + Delta-G solvation = 0.360055 kcal Electronic energy + Delta-G solvation = -28341.290974 eV Core-core repulsion = 24533.830521 eV Total energy + Delta-G solvation = -3807.460453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.83026 -39.58140 -37.87238 -34.86070 -34.54923 -33.31914 -32.95355 -31.24481 -29.88287 -29.47618 -28.93554 -27.73261 -25.26708 -24.41806 -23.95310 -22.11980 -21.76876 -20.60936 -20.14031 -19.63218 -18.82533 -17.43611 -17.27527 -16.29354 -16.14994 -15.71751 -15.15320 -14.78282 -14.73313 -14.36403 -14.11045 -13.90361 -13.72854 -13.61092 -13.48097 -13.36249 -13.20299 -13.07047 -12.89279 -12.73943 -12.58874 -12.46497 -12.27735 -12.04172 -11.81709 -11.79961 -11.65061 -11.50770 -11.11768 -10.88858 -10.65068 -10.59085 -10.27884 -10.22491 -9.94758 -9.75419 -9.52210 -9.02125 -8.82690 -8.78859 -8.24351 -7.14922 -5.70533 -3.05055 1.58162 2.08211 2.38686 3.37713 3.42303 3.45244 3.49784 3.53204 4.09289 4.27358 4.40052 4.48283 4.56663 4.65092 4.71087 4.80637 4.81062 4.93701 4.97552 5.00486 5.08786 5.10368 5.14662 5.31627 5.38336 5.40284 5.48101 5.49444 5.56526 5.59330 5.60796 5.65950 5.67545 5.76611 5.86421 5.93878 6.00449 6.03109 6.11845 6.29227 6.29452 6.45916 6.53666 6.59639 6.69418 6.79115 6.81865 6.91751 6.94307 7.65503 8.06989 8.39421 8.48917 9.28889 10.01421 10.22040 11.48139 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.001887 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.228864 B =14838.616428 C =15090.062650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.438 5.438 4 C 0.010 3.990 5 C -0.083 4.083 6 C -0.166 4.166 7 C -0.234 4.234 8 C 0.591 3.409 9 O -0.552 6.552 10 N -0.719 5.719 11 C 0.142 3.858 12 H 0.094 0.906 13 C -0.132 4.132 14 C -0.115 4.115 15 C -0.099 4.099 16 H 0.072 0.928 17 C 0.163 3.837 18 N -0.756 5.756 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.276 1.276 27 C -0.120 4.120 28 C 0.106 3.894 29 C -0.093 4.093 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.143 0.857 39 H 0.397 0.603 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -34.478 -14.156 38.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.115 5.115 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.190 4.190 7 C -0.243 4.243 8 C 0.380 3.620 9 O -0.432 6.432 10 N -0.369 5.369 11 C 0.038 3.962 12 H 0.112 0.888 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.119 4.119 16 H 0.091 0.909 17 C 0.036 3.964 18 N -0.401 5.401 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.159 4.159 28 C -0.010 4.010 29 C -0.150 4.150 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.232 0.768 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.193 0.807 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.079 0.921 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.889 -34.697 -13.219 38.694 hybrid contribution 1.330 -0.137 -0.857 1.588 sum -9.560 -34.834 -14.075 38.768 Atomic orbital electron populations 1.22152 0.94070 1.03087 1.03414 1.21878 0.95789 0.80710 1.04470 1.43643 1.50910 1.11869 1.05112 1.20168 1.08374 0.92613 0.88625 1.20320 1.02876 1.01120 0.89717 1.21760 1.07380 0.96728 0.93122 1.20113 1.16085 0.94994 0.93128 1.17341 0.75974 0.81651 0.87025 1.90731 1.55478 1.82268 1.14682 1.45879 1.67840 1.13119 1.10028 1.21887 0.95779 0.84730 0.93849 0.88758 1.22937 0.95408 0.97493 1.01256 1.22422 0.99949 0.92896 0.99996 1.21927 0.95936 0.95556 0.98452 0.90922 1.20782 0.90663 0.88483 0.96476 1.42713 1.03607 1.20139 1.73655 1.19087 0.95284 0.92469 1.30270 0.89275 1.24671 0.97358 0.96473 1.00837 1.69701 1.30393 1.11026 1.47316 0.86540 0.86200 0.77951 0.77849 1.21176 1.21801 1.20252 1.22375 0.99719 0.94182 0.99574 1.20269 1.00589 0.91047 0.89102 1.20568 1.04325 1.00530 0.89611 0.90609 0.91669 0.91763 0.89086 0.89045 0.91096 0.90068 0.91934 0.83880 0.76846 0.91392 0.91655 0.91764 0.90666 0.95664 0.95398 0.80692 0.93152 0.91537 0.90663 0.90564 0.92142 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.24 37.16 0.38 -0.24 16 2 C 0.09 0.40 6.30 -4.04 -0.03 0.38 16 3 N -0.44 -3.42 2.68 -107.96 -0.29 -3.71 16 4 C 0.01 0.08 6.85 -81.86 -0.56 -0.48 16 5 C -0.08 -0.38 10.06 36.01 0.36 -0.02 16 6 C -0.17 -1.53 10.45 -37.50 -0.39 -1.92 16 7 C -0.23 -2.70 6.29 -103.35 -0.65 -3.35 16 8 C 0.59 7.99 7.81 -12.59 -0.10 7.89 16 9 O -0.55 -9.09 14.49 5.26 0.08 -9.01 16 10 N -0.72 -8.36 5.16 -53.32 -0.28 -8.64 16 11 C 0.14 1.84 3.18 -66.27 -0.21 1.63 16 12 H 0.09 1.40 7.61 -51.93 -0.40 1.01 16 13 C -0.13 -1.77 6.61 -24.55 -0.16 -1.94 16 14 C -0.11 -1.75 6.09 -24.88 -0.15 -1.91 16 15 C -0.10 -1.53 2.96 -89.50 -0.26 -1.80 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 3.22 5.32 -4.04 -0.02 3.19 16 18 N -0.76 -18.42 5.25 -59.91 -0.31 -18.74 16 19 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -30.04 13.97 55.49 0.78 -29.26 16 23 Si 0.88 22.62 27.74 -169.99 -4.71 17.91 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 26 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 27 C -0.12 -1.50 6.18 -25.62 -0.16 -1.66 16 28 C 0.11 1.08 6.89 -81.88 -0.56 0.52 16 29 C -0.09 -0.82 9.52 36.01 0.34 -0.48 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.26 6.90 -51.93 -0.36 -0.10 16 34 H 0.09 0.31 6.88 -51.93 -0.36 -0.04 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.21 6.94 -51.93 -0.36 -0.15 16 38 H 0.14 1.04 7.70 -52.49 -0.40 0.63 16 39 H 0.40 3.67 7.47 -40.82 -0.30 3.37 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 46 H 0.36 8.56 5.41 -40.82 -0.22 8.34 16 47 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 48 H 0.07 0.70 7.72 -51.93 -0.40 0.30 16 49 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 52 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -35.62 410.13 -9.95 -45.57 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.96 Total: 7.11 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.43 Total: -7.40 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.10 Total: -60.35 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.62 -9.95 -45.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284191617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.926 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds