Wall clock time and date at job start Tue Mar 31 2020 18:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46655 * 2 1 4 4 C 1.36450 * 124.84634 * 270.01865 * 3 2 1 5 5 C 1.50699 * 125.57295 * 359.94721 * 4 3 2 6 6 C 1.34488 * 108.85229 * 179.73214 * 4 3 2 7 7 C 1.46683 * 106.33414 * 0.37829 * 6 4 3 8 8 C 1.47264 * 126.94462 * 179.88779 * 7 6 4 9 9 O 1.21625 * 120.00075 * 179.68427 * 8 7 6 10 10 N 1.34774 * 119.99836 * 359.68923 * 8 7 6 11 11 C 1.46501 * 120.00071 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.43268 * 325.69603 * 11 10 8 13 13 C 1.54894 * 110.48440 * 88.23781 * 11 10 8 14 14 C 1.55238 * 102.58338 * 156.67708 * 13 11 10 15 15 C 1.54266 * 104.23333 * 322.08174 * 14 13 11 16 16 H 1.08999 * 110.03060 * 264.32313 * 15 14 13 17 17 C 1.53009 * 110.07226 * 142.91908 * 15 14 13 18 18 N 1.46498 * 109.46985 * 67.80965 * 17 15 14 19 19 C 1.36941 * 119.99699 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99775 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00039 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00007 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47174 * 90.00149 * 23 21 19 25 25 H 1.48500 * 109.46820 * 209.99966 * 23 21 19 26 26 H 1.48494 * 109.47022 * 330.00008 * 23 21 19 27 27 C 1.53869 * 106.59800 * 23.61579 * 15 14 13 28 28 C 1.34650 * 124.85303 * 90.00078 * 3 2 1 29 29 C 1.50704 * 125.80058 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47410 * 300.00245 * 1 2 3 32 32 H 1.08996 * 109.47037 * 60.00742 * 1 2 3 33 33 H 1.08994 * 109.47410 * 239.99755 * 2 1 3 34 34 H 1.08996 * 109.46768 * 119.99737 * 2 1 3 35 35 H 1.08994 * 109.47104 * 89.99999 * 5 4 3 36 36 H 1.09003 * 109.47135 * 209.99948 * 5 4 3 37 37 H 1.08997 * 109.47337 * 329.99980 * 5 4 3 38 38 H 1.07998 * 126.83106 * 180.24990 * 6 4 3 39 39 H 0.97000 * 120.00069 * 359.97438 * 10 8 7 40 40 H 1.08996 * 110.75388 * 275.06061 * 13 11 10 41 41 H 1.08993 * 110.76071 * 38.44287 * 13 11 10 42 42 H 1.09005 * 110.46917 * 203.39204 * 14 13 11 43 43 H 1.09007 * 110.58541 * 80.83124 * 14 13 11 44 44 H 1.08993 * 109.47258 * 187.81041 * 17 15 14 45 45 H 1.08995 * 109.47197 * 307.81092 * 17 15 14 46 46 H 0.96998 * 120.00289 * 359.97438 * 18 17 15 47 47 H 0.96999 * 120.00502 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.02983 * 240.71432 * 27 15 14 49 49 H 1.08996 * 110.07773 * 119.30576 * 27 15 14 50 50 H 1.09003 * 109.47085 * 270.00024 * 29 28 3 51 51 H 1.08995 * 109.47161 * 29.99867 * 29 28 3 52 52 H 1.09002 * 109.46912 * 150.00304 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2778 2.1165 -1.1198 5 6 2.1101 1.6401 -2.5397 6 6 2.7031 3.3373 -0.7493 7 6 2.7115 3.3436 0.7175 8 6 3.1047 4.4586 1.5956 9 8 3.0576 4.3268 2.8038 10 7 3.5165 5.6249 1.0604 11 6 3.9071 6.7342 1.9339 12 1 3.2978 6.7396 2.8377 13 6 5.4105 6.6372 2.2941 14 6 5.7669 8.1041 2.6561 15 6 4.9620 8.9499 1.6479 16 1 5.5883 9.2094 0.7943 17 6 4.4450 10.2214 2.3239 18 7 5.5747 11.0957 2.6487 19 6 5.3543 12.2992 3.2637 20 1 4.3477 12.6040 3.5090 21 6 6.4248 13.1274 3.5720 22 7 6.2130 14.2843 4.1626 23 14 8.1661 12.5999 3.1484 24 1 8.5102 13.0774 1.7850 25 1 9.1133 13.1845 4.1314 26 1 8.2589 11.1185 3.1921 27 6 3.7795 8.0790 1.1887 28 6 2.2747 2.1068 1.1050 29 6 2.1079 1.6362 2.5269 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.1005 1.8670 -2.8822 36 1 2.8332 2.1451 -3.1802 37 1 2.2753 0.5636 -2.5837 38 1 2.9847 4.1505 -1.4018 39 1 3.5543 5.7298 0.0969 40 1 5.5610 5.9782 3.1491 41 1 5.9921 6.2985 1.4367 42 1 6.8358 8.2782 2.5325 43 1 5.4597 8.3325 3.6767 44 1 3.7656 10.7414 1.6486 45 1 3.9155 9.9568 3.2391 46 1 6.4788 10.8218 2.4287 47 1 6.9610 14.8629 4.3784 48 1 3.8319 7.9157 0.1123 49 1 2.8369 8.5612 1.4476 50 1 1.0988 1.8656 2.8695 51 1 2.2719 0.5598 2.5750 52 1 2.8321 2.1431 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284191617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:52 Heat of formation + Delta-G solvation = -21.919717 kcal Electronic energy + Delta-G solvation = -28342.257098 eV Core-core repulsion = 24533.830521 eV Total energy + Delta-G solvation = -3808.426577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.46029 -40.63558 -39.07712 -36.54697 -35.09678 -34.63926 -33.57360 -33.22291 -30.62812 -30.23937 -30.02427 -28.86692 -26.40227 -25.57710 -24.52734 -23.68431 -22.84623 -21.61336 -21.09939 -20.89117 -19.65533 -19.38411 -18.04296 -17.26689 -16.92213 -16.57368 -16.34078 -16.14051 -15.86402 -15.61347 -15.15944 -14.96426 -14.84494 -14.55293 -14.38339 -14.22010 -14.08808 -14.05289 -13.83603 -13.69297 -13.48896 -13.45750 -13.17291 -12.89332 -12.86004 -12.79861 -12.55136 -12.35458 -12.22281 -12.15063 -12.09964 -11.99039 -11.81863 -11.74130 -11.62539 -11.35207 -10.94682 -10.80202 -10.01207 -9.50044 -9.27744 -8.90965 -8.02155 -5.35257 0.77136 1.37978 1.42004 1.46071 1.49464 1.83205 2.45588 2.49269 2.60669 3.28883 3.54260 3.59224 3.77220 3.78364 3.86635 3.89804 3.94176 4.09283 4.12924 4.26582 4.39138 4.44362 4.49195 4.50715 4.51907 4.62300 4.63448 4.66694 4.68716 4.73590 4.76579 4.82607 4.85641 4.92297 4.95612 5.06010 5.06675 5.08332 5.13953 5.14327 5.23523 5.25576 5.36143 5.37569 5.52711 5.68005 5.76520 5.87199 6.17065 6.22059 6.38639 6.75183 7.09105 7.42986 7.85719 8.06086 9.19574 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.001887 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.228864 B =14838.616428 C =15090.062650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.434 5.434 4 C 0.013 3.987 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.266 4.266 8 C 0.585 3.415 9 O -0.592 6.592 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.069 0.931 13 C -0.121 4.121 14 C -0.115 4.115 15 C -0.089 4.089 16 H 0.085 0.915 17 C 0.159 3.841 18 N -0.756 5.756 19 C -0.236 4.236 20 H 0.053 0.947 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.251 1.251 27 C -0.109 4.109 28 C 0.094 3.906 29 C -0.088 4.088 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.411 0.589 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.017 0.983 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 -37.668 -17.307 42.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.110 5.110 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.205 4.205 7 C -0.276 4.276 8 C 0.376 3.624 9 O -0.475 6.475 10 N -0.357 5.357 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.108 4.108 16 H 0.103 0.897 17 C 0.033 3.967 18 N -0.402 5.402 19 C -0.367 4.367 20 H 0.071 0.929 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.175 1.175 27 C -0.147 4.147 28 C -0.024 4.024 29 C -0.146 4.146 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.177 0.823 39 H 0.248 0.752 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.035 0.965 46 H 0.200 0.800 47 H 0.067 0.933 48 H 0.116 0.884 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.275 -37.941 -16.432 42.604 hybrid contribution 0.980 0.806 0.138 1.277 sum -9.295 -37.135 -16.294 41.604 Atomic orbital electron populations 1.22122 0.93541 1.04188 1.02406 1.22207 0.96189 0.79016 1.06098 1.43907 1.49824 1.12886 1.04393 1.20734 1.06611 0.92203 0.89988 1.20427 1.03711 1.02203 0.87455 1.22003 1.08329 0.98114 0.92049 1.20163 1.18088 0.95039 0.94274 1.17751 0.75446 0.82422 0.86825 1.90705 1.57318 1.83038 1.16456 1.45712 1.67202 1.12230 1.10570 1.21677 0.95165 0.85569 0.93438 0.91247 1.22828 0.95761 0.95939 1.01412 1.22377 0.99964 0.94131 0.98807 1.21829 0.97086 0.93634 0.98293 0.89663 1.20963 0.89529 0.89804 0.96397 1.42698 1.05185 1.19168 1.73151 1.19067 0.93840 0.94126 1.29714 0.92861 1.25552 1.02337 0.96558 1.01321 1.69892 1.31791 1.12656 1.49225 0.85373 0.79701 0.78941 0.77599 1.20084 1.22275 1.17515 1.22280 0.98301 0.92895 1.01237 1.20438 1.00617 0.91244 0.90120 1.20488 1.03417 1.01845 0.88810 0.88456 0.93223 0.92190 0.86876 0.88072 0.90193 0.89126 0.90325 0.82310 0.75166 0.92608 0.89925 0.91567 0.92864 0.95575 0.96477 0.79991 0.93350 0.88432 0.90837 0.90601 0.89508 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.24 71.98 0.74 -0.10 16 2 C 0.08 0.50 6.30 86.38 0.54 1.05 16 3 N -0.43 -5.94 2.68 -495.47 -1.33 -7.27 16 4 C 0.01 0.17 6.85 40.98 0.28 0.45 16 5 C -0.08 -0.46 10.06 71.24 0.72 0.26 16 6 C -0.18 -3.05 10.45 23.62 0.25 -2.81 16 7 C -0.27 -6.06 6.29 -19.04 -0.12 -6.18 16 8 C 0.58 16.00 7.81 86.62 0.68 16.68 16 9 O -0.59 -20.44 14.49 -4.11 -0.06 -20.50 16 10 N -0.71 -15.80 5.16 -440.85 -2.28 -18.07 16 11 C 0.15 3.71 3.18 46.07 0.15 3.86 16 12 H 0.07 2.13 7.61 -2.39 -0.02 2.11 16 13 C -0.12 -3.11 6.61 32.01 0.21 -2.90 16 14 C -0.11 -3.39 6.09 31.79 0.19 -3.19 16 15 C -0.09 -2.59 2.96 -10.07 -0.03 -2.62 16 16 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 17 C 0.16 6.22 5.32 86.38 0.46 6.68 16 18 N -0.76 -36.49 5.25 -343.45 -1.80 -38.30 16 19 C -0.24 -14.02 10.47 84.03 0.88 -13.14 16 20 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 22 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 23 Si 0.96 46.51 27.74 68.60 1.90 48.41 16 24 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 27 C -0.11 -2.51 6.18 31.32 0.19 -2.31 16 28 C 0.09 1.86 6.89 41.78 0.29 2.14 16 29 C -0.09 -1.57 9.52 71.24 0.68 -0.89 16 30 H 0.10 0.08 8.14 -2.38 -0.02 0.07 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.11 0.20 6.90 -2.39 -0.02 0.18 16 34 H 0.10 0.42 6.88 -2.39 -0.02 0.40 16 35 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.21 6.94 -2.39 -0.02 0.20 16 38 H 0.16 1.94 7.70 -2.91 -0.02 1.92 16 39 H 0.41 6.75 7.47 -92.71 -0.69 6.06 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.05 1.80 7.76 -2.38 -0.02 1.78 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 46 H 0.37 16.71 5.41 -92.71 -0.50 16.21 16 47 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 48 H 0.10 1.70 7.72 -2.39 -0.02 1.68 16 49 H 0.07 1.76 7.67 -2.39 -0.02 1.74 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.09 0.99 6.92 -2.39 -0.02 0.97 16 52 H 0.07 1.77 6.47 -2.39 -0.02 1.76 16 Total: -1.00 -80.20 410.13 2.97 -77.24 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.34 Total: 29.58 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 6.57 Total: -6.60 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.11 Total: -128.14 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.50 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -80.20 2.97 -77.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284191617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.318 kcal (2) G-P(sol) polarization free energy of solvation -80.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds