Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 N 1.46491 * 109.47383 * 120.00652 * 2 1 3 5 5 C 1.36946 * 119.99894 * 275.00220 * 4 2 1 6 6 H 1.07996 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00070 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00203 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47051 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47152 * 119.99442 * 9 7 5 12 12 H 1.48492 * 109.47055 * 239.99882 * 9 7 5 13 13 C 1.52995 * 109.46809 * 240.00877 * 2 1 3 14 14 H 1.09000 * 109.59414 * 54.17733 * 13 2 1 15 15 C 1.53194 * 109.58791 * 293.89008 * 13 2 1 16 16 C 1.53038 * 109.31654 * 185.57799 * 15 13 2 17 17 C 1.53039 * 109.53494 * 61.37015 * 16 15 13 18 18 C 1.53193 * 109.31148 * 298.63070 * 17 16 15 19 19 N 1.46926 * 108.89061 * 54.56665 * 18 17 16 20 20 C 1.34781 * 120.63109 * 126.46488 * 19 18 17 21 21 O 1.21279 * 120.00151 * 184.53612 * 20 19 18 22 22 C 1.50703 * 119.99968 * 4.53656 * 20 19 18 23 23 C 1.52999 * 109.47264 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47161 * 179.97438 * 23 22 20 25 25 N 1.46499 * 109.46859 * 179.97438 * 24 23 22 26 26 C 1.36341 * 125.63822 * 269.69228 * 25 24 23 27 27 C 1.34854 * 108.21661 * 179.83549 * 26 25 24 28 28 C 1.40884 * 107.41928 * 0.42185 * 27 26 25 29 29 C 1.34856 * 107.41819 * 359.73994 * 28 27 26 30 30 H 1.08999 * 109.47887 * 65.01876 * 1 2 3 31 31 H 1.09003 * 109.47538 * 185.02301 * 1 2 3 32 32 H 1.09006 * 109.47047 * 305.02209 * 1 2 3 33 33 H 0.96993 * 120.00344 * 95.00123 * 4 2 1 34 34 H 0.96998 * 119.99998 * 180.02562 * 8 7 5 35 35 H 1.09010 * 109.49087 * 65.62783 * 15 13 2 36 36 H 1.08998 * 109.52300 * 305.55092 * 15 13 2 37 37 H 1.08994 * 109.45895 * 301.34835 * 16 15 13 38 38 H 1.09005 * 109.45935 * 181.38687 * 16 15 13 39 39 H 1.08997 * 109.50082 * 178.68503 * 17 16 15 40 40 H 1.09002 * 109.50042 * 58.58291 * 17 16 15 41 41 H 1.09004 * 109.58744 * 174.42363 * 18 17 16 42 42 H 1.08998 * 109.59191 * 294.71044 * 18 17 16 43 43 H 1.09001 * 109.46822 * 299.99864 * 22 20 19 44 44 H 1.08993 * 109.47287 * 59.99585 * 22 20 19 45 45 H 1.09001 * 109.47068 * 299.99687 * 23 22 20 46 46 H 1.09003 * 109.47328 * 59.99610 * 23 22 20 47 47 H 1.09001 * 109.47164 * 299.99983 * 24 23 22 48 48 H 1.09003 * 109.46974 * 60.00336 * 24 23 22 49 49 H 1.07996 * 125.89142 * 359.96699 * 26 25 24 50 50 H 1.08007 * 126.28481 * 180.16744 * 27 26 25 51 51 H 1.08000 * 126.29559 * 179.73442 * 28 27 26 52 52 H 1.07996 * 125.88823 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6124 -0.6620 3.5089 8 7 2.9255 -1.9390 3.4497 9 14 2.7914 0.2699 5.1179 10 1 2.3774 1.6823 4.9207 11 1 1.9312 -0.3587 6.1524 12 1 4.2085 0.2270 5.5597 13 6 2.0399 -0.7210 -1.2493 14 1 1.5950 -0.2723 -2.1375 15 6 1.6600 -2.2034 -1.1778 16 6 2.2908 -2.9452 -2.3584 17 6 3.8149 -2.8329 -2.2780 18 6 4.2193 -1.3577 -2.3621 19 7 3.5034 -0.6081 -1.3208 20 6 4.1764 0.1654 -0.4460 21 8 3.5840 0.7138 0.4591 22 6 5.6650 0.3489 -0.5925 23 6 6.1780 1.2650 0.5204 24 6 7.6894 1.4507 0.3721 25 7 8.1804 2.3284 1.4374 26 6 8.2801 3.6862 1.3652 27 6 8.7686 4.1360 2.5389 28 6 8.9873 3.0140 3.3624 29 6 8.6187 1.9217 2.6627 30 1 -0.3635 0.4340 -0.9315 31 1 -0.3634 -1.0237 0.0900 32 1 -0.3633 0.5898 0.8416 33 1 2.2491 -1.6318 1.1524 34 1 3.2488 -2.3963 4.2416 35 1 0.5754 -2.3035 -1.2228 36 1 2.0261 -2.6286 -0.2434 37 1 1.9429 -2.5038 -3.2923 38 1 2.0017 -3.9957 -2.3236 39 1 4.2643 -3.3810 -3.1060 40 1 4.1612 -3.2518 -1.3332 41 1 5.2941 -1.2640 -2.2062 42 1 3.9566 -0.9621 -3.3431 43 1 6.1592 -0.6201 -0.5217 44 1 5.8822 0.7974 -1.5618 45 1 5.6838 2.2340 0.4501 46 1 5.9608 0.8160 1.4897 47 1 8.1832 0.4816 0.4427 48 1 7.9068 1.8996 -0.5971 49 1 8.0120 4.2965 0.5155 50 1 8.9610 5.1667 2.7983 51 1 9.3783 3.0263 4.3691 52 1 8.6634 0.9009 3.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316880769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = 58.264799 kcal Electronic energy + Delta-G solvation = -30675.331073 eV Core-core repulsion = 26870.381558 eV Total energy + Delta-G solvation = -3804.949515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94190 -40.12048 -37.08529 -35.44901 -34.48326 -32.46034 -32.14928 -30.92863 -29.61474 -28.60529 -28.01555 -26.75417 -24.62160 -23.87467 -23.17472 -22.06139 -20.65058 -20.30433 -19.81934 -19.68828 -18.36027 -17.26985 -16.90011 -16.15012 -15.62644 -15.45176 -14.66236 -14.47012 -14.35904 -14.14566 -13.91092 -13.67172 -13.56834 -13.42812 -13.06113 -12.87073 -12.75280 -12.36020 -12.21426 -12.09277 -11.92778 -11.90730 -11.71224 -11.57199 -11.41299 -11.36356 -11.09449 -10.81422 -10.70889 -10.62402 -10.60572 -10.49858 -10.35398 -10.01510 -9.69891 -9.33491 -8.67791 -8.44999 -8.17941 -7.98838 -7.86928 -6.54747 -5.47972 -2.69094 2.44569 3.07852 3.23123 3.38581 3.54688 3.59499 3.66046 3.67800 4.70831 4.74604 4.85411 4.89028 5.02175 5.05215 5.10389 5.18268 5.31655 5.35431 5.38045 5.41319 5.43710 5.50849 5.55668 5.69831 5.70347 5.74408 5.79319 5.81419 5.85149 5.92101 6.02381 6.11751 6.17418 6.18448 6.27621 6.31668 6.43669 6.45516 6.47670 6.51918 6.52967 6.61493 6.91770 7.03483 7.09864 7.15829 7.40128 7.42639 7.54945 8.02556 8.05249 8.70845 9.05847 9.82904 10.39739 10.76078 11.76672 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009240 B = 0.004612 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.473156 B = 6069.355873 C = 8115.500395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.171 3.829 3 H 0.080 0.920 4 N -0.701 5.701 5 C -0.169 4.169 6 H 0.064 0.936 7 C -0.031 4.031 8 N -0.949 5.949 9 Si 0.895 3.105 10 H -0.284 1.284 11 H -0.299 1.299 12 H -0.297 1.297 13 C 0.147 3.853 14 H 0.059 0.941 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.114 3.886 19 N -0.614 5.614 20 C 0.489 3.511 21 O -0.446 6.446 22 C -0.131 4.131 23 C -0.119 4.119 24 C 0.106 3.894 25 N -0.444 5.444 26 C -0.017 4.017 27 C -0.206 4.206 28 C -0.208 4.208 29 C -0.009 4.009 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.377 0.623 34 H 0.246 0.754 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.157 0.843 50 H 0.131 0.869 51 H 0.131 0.869 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 2.564 -15.702 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 H 0.097 0.903 4 N -0.343 5.343 5 C -0.301 4.301 6 H 0.082 0.918 7 C -0.224 4.224 8 N -0.602 5.602 9 Si 0.728 3.272 10 H -0.210 1.210 11 H -0.227 1.227 12 H -0.225 1.225 13 C 0.043 3.957 14 H 0.077 0.923 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.010 4.010 19 N -0.352 5.352 20 C 0.275 3.725 21 O -0.315 6.315 22 C -0.172 4.172 23 C -0.157 4.157 24 C -0.016 4.016 25 N -0.119 5.119 26 C -0.147 4.147 27 C -0.231 4.231 28 C -0.232 4.232 29 C -0.140 4.140 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.213 0.787 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.174 0.826 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.852 2.830 -15.310 17.437 hybrid contribution 0.219 -0.134 0.904 0.940 sum 8.071 2.696 -14.406 16.732 Atomic orbital electron populations 1.22600 1.00347 1.00820 0.99330 1.20660 0.90051 0.97727 0.85434 0.90276 1.42402 1.77205 1.09579 1.05110 1.19106 1.31624 0.93081 0.86302 0.91846 1.24520 1.04339 0.95995 0.97520 1.69648 1.54044 1.08570 1.27946 0.86237 0.77025 0.78824 0.85072 1.20986 1.22691 1.22525 1.21558 0.79240 0.95681 0.99176 0.92325 1.21992 1.00463 0.95593 0.99160 1.21492 0.95055 1.00272 0.98566 1.21912 0.96830 0.96269 1.02405 1.21551 0.96707 0.91620 0.91129 1.47896 1.06711 1.47836 1.32713 1.20340 0.88916 0.81226 0.82036 1.91027 1.67213 1.45214 1.28075 1.21551 0.95065 1.01041 0.99574 1.21693 0.92330 1.01133 1.00581 1.21918 0.95896 0.94361 0.89405 1.44145 1.48624 1.06409 1.12686 1.21761 1.08877 0.83147 1.00944 1.20841 1.08975 0.98617 0.94656 1.20860 1.09688 0.92322 1.00342 1.21869 1.06135 0.99817 0.86131 0.94995 0.93625 0.92928 0.78721 0.94430 0.91256 0.90182 0.92508 0.92214 0.91576 0.91193 0.90478 0.92413 0.89738 0.90106 0.90660 0.89556 0.89505 0.89708 0.82581 0.85139 0.85078 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.15 37.16 0.34 -2.84 16 2 C 0.17 3.49 1.88 -67.94 -0.13 3.36 16 3 H 0.08 1.79 5.92 -52.14 -0.31 1.48 16 4 N -0.70 -17.49 3.60 -53.43 -0.19 -17.68 16 5 C -0.17 -4.84 7.98 -15.05 -0.12 -4.96 16 6 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.03 -0.93 5.50 -17.43 -0.10 -1.03 16 8 N -0.95 -29.56 13.06 55.49 0.72 -28.83 16 9 Si 0.89 24.20 29.55 -169.99 -5.02 19.17 16 10 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 12 H -0.30 -8.16 7.11 56.52 0.40 -7.75 16 13 C 0.15 2.39 2.72 -67.58 -0.18 2.21 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.13 -2.06 4.87 -26.61 -0.13 -2.19 16 16 C -0.12 -1.38 5.88 -26.69 -0.16 -1.54 16 17 C -0.14 -1.52 6.08 -26.61 -0.16 -1.68 16 18 C 0.11 1.26 6.33 -3.71 -0.02 1.24 16 19 N -0.61 -9.35 2.98 -165.19 -0.49 -9.85 16 20 C 0.49 8.54 7.38 -10.98 -0.08 8.46 16 21 O -0.45 -9.96 8.73 5.56 0.05 -9.91 16 22 C -0.13 -1.69 4.09 -27.88 -0.11 -1.80 16 23 C -0.12 -1.71 4.83 -26.73 -0.13 -1.84 16 24 C 0.11 1.18 6.09 -4.04 -0.02 1.16 16 25 N -0.44 -6.05 2.75 -117.13 -0.32 -6.38 16 26 C -0.02 -0.23 11.43 -16.75 -0.19 -0.42 16 27 C -0.21 -2.86 10.86 -39.78 -0.43 -3.30 16 28 C -0.21 -3.02 10.86 -39.78 -0.43 -3.45 16 29 C -0.01 -0.14 11.43 -16.74 -0.19 -0.33 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.84 6.99 -51.93 -0.36 0.48 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.38 10.05 5.64 -40.82 -0.23 9.82 16 34 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.07 1.03 7.01 -51.92 -0.36 0.67 16 36 H 0.08 1.53 6.06 -51.93 -0.31 1.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.72 5.96 -51.93 -0.31 0.41 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.99 7.50 -51.93 -0.39 0.60 16 44 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 46 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 50 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 51 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 52 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -34.50 398.51 -10.51 -45.01 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -9.01 Total: 11.39 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.26 Total: -8.94 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.28 Total: -62.74 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.05 Total: -9.91 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.50 -10.51 -45.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.277 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds