Wall clock time and date at job start Tue Mar 31 2020 17:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 N 1.46491 * 109.47383 * 120.00652 * 2 1 3 5 5 C 1.36946 * 119.99894 * 275.00220 * 4 2 1 6 6 H 1.07996 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00070 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00203 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47051 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47152 * 119.99442 * 9 7 5 12 12 H 1.48492 * 109.47055 * 239.99882 * 9 7 5 13 13 C 1.52995 * 109.46809 * 240.00877 * 2 1 3 14 14 H 1.09000 * 109.59414 * 54.17733 * 13 2 1 15 15 C 1.53194 * 109.58791 * 293.89008 * 13 2 1 16 16 C 1.53038 * 109.31654 * 185.57799 * 15 13 2 17 17 C 1.53039 * 109.53494 * 61.37015 * 16 15 13 18 18 C 1.53193 * 109.31148 * 298.63070 * 17 16 15 19 19 N 1.46926 * 108.89061 * 54.56665 * 18 17 16 20 20 C 1.34781 * 120.63109 * 126.46488 * 19 18 17 21 21 O 1.21279 * 120.00151 * 184.53612 * 20 19 18 22 22 C 1.50703 * 119.99968 * 4.53656 * 20 19 18 23 23 C 1.52999 * 109.47264 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47161 * 179.97438 * 23 22 20 25 25 N 1.46499 * 109.46859 * 179.97438 * 24 23 22 26 26 C 1.36341 * 125.63822 * 269.69228 * 25 24 23 27 27 C 1.34854 * 108.21661 * 179.83549 * 26 25 24 28 28 C 1.40884 * 107.41928 * 0.42185 * 27 26 25 29 29 C 1.34856 * 107.41819 * 359.73994 * 28 27 26 30 30 H 1.08999 * 109.47887 * 65.01876 * 1 2 3 31 31 H 1.09003 * 109.47538 * 185.02301 * 1 2 3 32 32 H 1.09006 * 109.47047 * 305.02209 * 1 2 3 33 33 H 0.96993 * 120.00344 * 95.00123 * 4 2 1 34 34 H 0.96998 * 119.99998 * 180.02562 * 8 7 5 35 35 H 1.09010 * 109.49087 * 65.62783 * 15 13 2 36 36 H 1.08998 * 109.52300 * 305.55092 * 15 13 2 37 37 H 1.08994 * 109.45895 * 301.34835 * 16 15 13 38 38 H 1.09005 * 109.45935 * 181.38687 * 16 15 13 39 39 H 1.08997 * 109.50082 * 178.68503 * 17 16 15 40 40 H 1.09002 * 109.50042 * 58.58291 * 17 16 15 41 41 H 1.09004 * 109.58744 * 174.42363 * 18 17 16 42 42 H 1.08998 * 109.59191 * 294.71044 * 18 17 16 43 43 H 1.09001 * 109.46822 * 299.99864 * 22 20 19 44 44 H 1.08993 * 109.47287 * 59.99585 * 22 20 19 45 45 H 1.09001 * 109.47068 * 299.99687 * 23 22 20 46 46 H 1.09003 * 109.47328 * 59.99610 * 23 22 20 47 47 H 1.09001 * 109.47164 * 299.99983 * 24 23 22 48 48 H 1.09003 * 109.46974 * 60.00336 * 24 23 22 49 49 H 1.07996 * 125.89142 * 359.96699 * 26 25 24 50 50 H 1.08007 * 126.28481 * 180.16744 * 27 26 25 51 51 H 1.08000 * 126.29559 * 179.73442 * 28 27 26 52 52 H 1.07996 * 125.88823 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6124 -0.6620 3.5089 8 7 2.9255 -1.9390 3.4497 9 14 2.7914 0.2699 5.1179 10 1 2.3774 1.6823 4.9207 11 1 1.9312 -0.3587 6.1524 12 1 4.2085 0.2270 5.5597 13 6 2.0399 -0.7210 -1.2493 14 1 1.5950 -0.2723 -2.1375 15 6 1.6600 -2.2034 -1.1778 16 6 2.2908 -2.9452 -2.3584 17 6 3.8149 -2.8329 -2.2780 18 6 4.2193 -1.3577 -2.3621 19 7 3.5034 -0.6081 -1.3208 20 6 4.1764 0.1654 -0.4460 21 8 3.5840 0.7138 0.4591 22 6 5.6650 0.3489 -0.5925 23 6 6.1780 1.2650 0.5204 24 6 7.6894 1.4507 0.3721 25 7 8.1804 2.3284 1.4374 26 6 8.2801 3.6862 1.3652 27 6 8.7686 4.1360 2.5389 28 6 8.9873 3.0140 3.3624 29 6 8.6187 1.9217 2.6627 30 1 -0.3635 0.4340 -0.9315 31 1 -0.3634 -1.0237 0.0900 32 1 -0.3633 0.5898 0.8416 33 1 2.2491 -1.6318 1.1524 34 1 3.2488 -2.3963 4.2416 35 1 0.5754 -2.3035 -1.2228 36 1 2.0261 -2.6286 -0.2434 37 1 1.9429 -2.5038 -3.2923 38 1 2.0017 -3.9957 -2.3236 39 1 4.2643 -3.3810 -3.1060 40 1 4.1612 -3.2518 -1.3332 41 1 5.2941 -1.2640 -2.2062 42 1 3.9566 -0.9621 -3.3431 43 1 6.1592 -0.6201 -0.5217 44 1 5.8822 0.7974 -1.5618 45 1 5.6838 2.2340 0.4501 46 1 5.9608 0.8160 1.4897 47 1 8.1832 0.4816 0.4427 48 1 7.9068 1.8996 -0.5971 49 1 8.0120 4.2965 0.5155 50 1 8.9610 5.1667 2.7983 51 1 9.3783 3.0263 4.3691 52 1 8.6634 0.9009 3.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316880769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:05 Heat of formation + Delta-G solvation = 38.271360 kcal Electronic energy + Delta-G solvation = -30676.198053 eV Core-core repulsion = 26870.381558 eV Total energy + Delta-G solvation = -3805.816496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97675 -41.40589 -38.34446 -36.96291 -35.70745 -34.11799 -33.59589 -32.05043 -31.20600 -29.68550 -29.65040 -27.84714 -25.95954 -25.53444 -24.59117 -23.25282 -21.79910 -21.35573 -21.13684 -20.82761 -19.61779 -19.01966 -18.30032 -17.40962 -16.79164 -16.73742 -16.35425 -15.74350 -15.68290 -15.47344 -15.35746 -14.89541 -14.74130 -14.68610 -14.37066 -14.09946 -13.99882 -13.79429 -13.61465 -13.35329 -13.15151 -13.04141 -12.96032 -12.88529 -12.78968 -12.66636 -12.63137 -12.52998 -12.30112 -12.12306 -11.92754 -11.76729 -11.69078 -11.51604 -11.34942 -11.16750 -10.81728 -9.61121 -9.49998 -9.24256 -9.05828 -8.59697 -7.78832 -4.95351 1.37582 1.37741 1.40268 1.47691 2.06657 2.14288 2.14876 2.40224 2.63392 3.55470 3.65904 3.80083 3.93301 3.98385 3.99005 4.07712 4.14138 4.24813 4.30727 4.33644 4.38144 4.39227 4.41237 4.46925 4.54531 4.64303 4.70400 4.71986 4.76310 4.79119 4.86721 4.92702 4.98059 5.04620 5.06623 5.11261 5.18329 5.28106 5.30571 5.34344 5.37924 5.43125 5.46885 5.58003 5.60776 5.67316 6.02493 6.09658 6.33835 6.45554 6.55387 6.83914 7.51326 7.77878 8.31983 8.55692 9.46600 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009240 B = 0.004612 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.473156 B = 6069.355873 C = 8115.500395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.166 3.834 3 H 0.057 0.943 4 N -0.701 5.701 5 C -0.143 4.143 6 H 0.048 0.952 7 C -0.092 4.092 8 N -0.980 5.980 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.305 1.305 13 C 0.151 3.849 14 H 0.089 0.911 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.134 4.134 18 C 0.107 3.893 19 N -0.614 5.614 20 C 0.475 3.525 21 O -0.512 6.512 22 C -0.120 4.120 23 C -0.107 4.107 24 C 0.111 3.889 25 N -0.450 5.450 26 C -0.019 4.019 27 C -0.227 4.227 28 C -0.227 4.227 29 C -0.034 4.034 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.368 0.632 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.103 0.897 48 H 0.124 0.876 49 H 0.186 0.814 50 H 0.146 0.854 51 H 0.138 0.862 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 2.704 -19.944 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 H 0.075 0.925 4 N -0.341 5.341 5 C -0.277 4.277 6 H 0.066 0.934 7 C -0.281 4.281 8 N -0.636 5.636 9 Si 0.778 3.222 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.234 1.234 13 C 0.047 3.953 14 H 0.107 0.893 15 C -0.167 4.167 16 C -0.148 4.148 17 C -0.172 4.172 18 C -0.014 4.014 19 N -0.350 5.350 20 C 0.262 3.738 21 O -0.386 6.386 22 C -0.160 4.160 23 C -0.145 4.145 24 C -0.010 4.010 25 N -0.124 5.124 26 C -0.149 4.149 27 C -0.252 4.252 28 C -0.252 4.252 29 C -0.164 4.164 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.202 0.798 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.121 0.879 48 H 0.142 0.858 49 H 0.203 0.797 50 H 0.164 0.836 51 H 0.156 0.844 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.643 2.972 -19.628 21.651 hybrid contribution -0.092 -0.119 2.106 2.111 sum 8.551 2.853 -17.522 19.705 Atomic orbital electron populations 1.22450 0.98923 1.00561 1.00269 1.20761 0.90829 0.96813 0.85810 0.92547 1.42463 1.76971 1.09021 1.05640 1.19162 1.28708 0.92215 0.87616 0.93420 1.25020 1.06291 0.96845 0.99979 1.69765 1.56309 1.09557 1.27964 0.85423 0.76294 0.77980 0.82515 1.20680 1.22603 1.23388 1.21438 0.80445 0.95743 0.97684 0.89287 1.21905 1.00815 0.95199 0.98777 1.21479 0.95408 1.00237 0.97690 1.21915 0.96354 0.96706 1.02209 1.21925 0.97631 0.90880 0.91010 1.48056 1.06436 1.47410 1.33108 1.21222 0.90825 0.80382 0.81329 1.90993 1.68861 1.47995 1.30786 1.21527 0.91565 1.01849 1.01033 1.21497 0.94862 0.99820 0.98368 1.22050 0.93146 0.95400 0.90385 1.44374 1.48272 1.06971 1.12833 1.22297 1.07699 0.83263 1.01625 1.21179 1.09633 0.99288 0.95083 1.21169 1.10058 0.92933 1.01014 1.22121 1.06988 1.00260 0.87079 0.91166 0.93775 0.95470 0.79805 0.95231 0.90991 0.94783 0.89792 0.91678 0.88036 0.94311 0.88279 0.89181 0.88094 0.85396 0.92719 0.95326 0.87887 0.85759 0.79711 0.83644 0.84444 0.81952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 9.15 71.98 0.66 -5.33 16 2 C 0.17 6.84 1.88 44.99 0.08 6.93 16 3 H 0.06 2.63 5.92 -5.77 -0.03 2.60 16 4 N -0.70 -36.39 3.60 -322.97 -1.16 -37.55 16 5 C -0.14 -8.59 7.98 84.03 0.67 -7.92 16 6 H 0.05 2.96 7.83 -2.91 -0.02 2.94 16 7 C -0.09 -5.74 5.50 84.86 0.47 -5.28 16 8 N -0.98 -63.71 13.06 21.65 0.28 -63.43 16 9 Si 0.94 52.08 29.55 68.60 2.03 54.11 16 10 H -0.28 -15.15 7.11 99.48 0.71 -14.44 16 11 H -0.30 -16.23 7.11 99.48 0.71 -15.52 16 12 H -0.31 -17.07 7.11 99.48 0.71 -16.37 16 13 C 0.15 4.64 2.72 44.97 0.12 4.76 16 14 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.13 -3.79 4.87 30.67 0.15 -3.64 16 16 C -0.11 -2.26 5.88 30.62 0.18 -2.08 16 17 C -0.13 -2.50 6.08 30.67 0.19 -2.32 16 18 C 0.11 1.89 6.33 86.36 0.55 2.44 16 19 N -0.61 -17.38 2.98 -794.93 -2.37 -19.75 16 20 C 0.47 16.29 7.38 87.66 0.65 16.94 16 21 O -0.51 -23.72 8.73 -3.03 -0.03 -23.75 16 22 C -0.12 -2.79 4.09 29.85 0.12 -2.67 16 23 C -0.11 -3.04 4.83 30.59 0.15 -2.89 16 24 C 0.11 2.23 6.09 86.38 0.53 2.76 16 25 N -0.45 -11.89 2.75 -524.48 -1.44 -13.33 16 26 C -0.02 -0.47 11.43 83.21 0.95 0.48 16 27 C -0.23 -6.23 10.86 22.14 0.24 -5.99 16 28 C -0.23 -6.73 10.86 22.14 0.24 -6.49 16 29 C -0.03 -1.01 11.43 83.21 0.95 -0.06 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.62 6.99 -2.39 -0.02 1.61 16 32 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.37 20.51 5.64 -92.71 -0.52 19.99 16 34 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.07 2.04 7.01 -2.38 -0.02 2.02 16 36 H 0.03 1.33 6.06 -2.39 -0.01 1.31 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.34 5.96 -2.39 -0.01 1.32 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 2.07 7.50 -2.39 -0.02 2.05 16 44 H 0.13 1.83 8.10 -2.39 -0.02 1.81 16 45 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 46 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 47 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.19 3.40 8.06 -2.91 -0.02 3.37 16 50 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 51 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 52 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -82.65 398.51 4.55 -78.11 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.34 Total: 35.96 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 6.89 Total: -10.36 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -4.69 Total: -134.06 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.03 Total: -23.75 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.03 Total: 54.11 kcal Total: -82.65 4.55 -78.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.377 kcal (2) G-P(sol) polarization free energy of solvation -82.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds