Wall clock time and date at job start Tue Mar 31 2020 17:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47379 * 2 1 4 4 N 1.46501 * 109.47419 * 120.00479 * 2 1 3 5 5 C 1.36938 * 119.99863 * 285.85454 * 4 2 1 6 6 H 1.08004 * 119.99942 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99895 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47321 * 119.99529 * 9 7 5 12 12 H 1.48501 * 109.47177 * 239.99048 * 9 7 5 13 13 C 1.53006 * 109.47030 * 240.00327 * 2 1 3 14 14 H 1.09005 * 109.69799 * 292.99863 * 13 2 1 15 15 C 1.53617 * 109.66370 * 53.59177 * 13 2 1 16 16 C 1.53042 * 109.23916 * 174.55133 * 15 13 2 17 17 C 1.53036 * 109.53798 * 298.50823 * 16 15 13 18 18 C 1.53193 * 109.31210 * 61.36834 * 17 16 15 19 19 N 1.46920 * 109.58602 * 172.64683 * 13 2 1 20 20 C 1.34777 * 120.63319 * 6.62070 * 19 13 2 21 21 O 1.21280 * 119.99867 * 354.04323 * 20 19 13 22 22 C 1.50704 * 120.00133 * 174.03664 * 20 19 13 23 23 C 1.53002 * 109.47182 * 180.02562 * 22 20 19 24 24 C 1.52992 * 109.47264 * 180.02562 * 23 22 20 25 25 N 1.46498 * 109.47363 * 179.97438 * 24 23 22 26 26 C 1.36347 * 125.63490 * 269.97731 * 25 24 23 27 27 C 1.34849 * 108.21758 * 180.02562 * 26 25 24 28 28 C 1.40895 * 107.41677 * 0.02562 * 27 26 25 29 29 C 1.34847 * 107.41758 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47147 * 174.39242 * 1 2 3 31 31 H 1.08997 * 109.46829 * 294.38646 * 1 2 3 32 32 H 1.08998 * 109.47493 * 54.39067 * 1 2 3 33 33 H 0.96997 * 120.00215 * 105.84650 * 4 2 1 34 34 H 0.96993 * 120.00267 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.63866 * 54.55899 * 15 13 2 36 36 H 1.09002 * 109.43103 * 294.41727 * 15 13 2 37 37 H 1.09010 * 109.45724 * 178.48895 * 16 15 13 38 38 H 1.08993 * 109.46327 * 58.53407 * 16 15 13 39 39 H 1.09001 * 109.49946 * 301.41626 * 17 16 15 40 40 H 1.09001 * 109.49815 * 181.31859 * 17 16 15 41 41 H 1.09006 * 109.58604 * 185.57890 * 18 17 16 42 42 H 1.08998 * 109.70371 * 65.22378 * 18 17 16 43 43 H 1.09004 * 109.46849 * 60.00554 * 22 20 19 44 44 H 1.08999 * 109.46896 * 300.00239 * 22 20 19 45 45 H 1.09000 * 109.47369 * 59.99532 * 23 22 20 46 46 H 1.09005 * 109.46823 * 300.00097 * 23 22 20 47 47 H 1.09007 * 109.47412 * 59.99767 * 24 23 22 48 48 H 1.08997 * 109.47421 * 299.99928 * 24 23 22 49 49 H 1.08006 * 125.89076 * 0.02562 * 26 25 24 50 50 H 1.08000 * 126.29214 * 180.26294 * 27 26 25 51 51 H 1.07998 * 126.28672 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.89208 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9412 -0.0796 2.4191 6 1 1.5206 0.9118 2.5018 7 6 2.4044 -0.7337 3.5524 8 7 2.9174 -1.9417 3.4515 9 14 2.2998 0.1002 5.2206 10 1 1.6878 1.4442 5.0647 11 1 1.4648 -0.7214 6.1333 12 1 3.6640 0.2409 5.7901 13 6 2.0400 -0.7212 -1.2493 14 1 1.7844 -1.7794 -1.1928 15 6 1.4028 -0.0997 -2.5013 16 6 2.0201 -0.7347 -3.7495 17 6 3.5227 -0.4463 -3.7806 18 6 4.1833 -1.0668 -2.5455 19 7 3.4984 -0.5712 -1.3438 20 6 4.1956 0.0052 -0.3446 21 8 3.6110 0.5024 0.5944 22 6 5.7016 0.0316 -0.3942 23 6 6.2407 0.7376 0.8515 24 6 7.7695 0.7650 0.8008 25 7 8.2856 1.4416 1.9933 26 6 8.5308 2.7782 2.1048 27 6 8.9973 3.0191 3.3468 28 6 9.0423 1.7860 4.0270 29 6 8.6011 0.8387 3.1748 30 1 -0.3634 -1.0228 -0.1004 31 1 -0.3633 0.4243 0.9360 32 1 -0.3634 0.5983 -0.8355 33 1 2.3963 -1.5809 1.1218 34 1 3.2408 -2.3989 4.2434 35 1 1.5865 0.9747 -2.5110 36 1 0.3287 -0.2855 -2.4919 37 1 1.5513 -0.3154 -4.6399 38 1 1.8574 -1.8122 -3.7270 39 1 3.6865 0.6313 -3.7781 40 1 3.9576 -0.8788 -4.6817 41 1 5.2346 -0.7809 -2.5110 42 1 4.1012 -2.1527 -2.5913 43 1 6.0264 0.5683 -1.2857 44 1 6.0820 -0.9894 -0.4260 45 1 5.9158 0.2007 1.7427 46 1 5.8602 1.7586 0.8837 47 1 8.0940 1.3023 -0.0904 48 1 8.1503 -0.2558 0.7684 49 1 8.3778 3.5166 1.3316 50 1 9.2804 3.9811 3.7480 51 1 9.3699 1.6286 5.0440 52 1 8.5133 -0.2159 3.3907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316880776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:13 Heat of formation + Delta-G solvation = 60.259172 kcal Electronic energy + Delta-G solvation = -30544.085346 eV Core-core repulsion = 26739.222314 eV Total energy + Delta-G solvation = -3804.863033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89313 -40.09662 -37.06778 -35.49375 -34.41335 -32.57320 -32.19428 -30.88268 -29.85430 -28.55891 -27.80631 -26.71168 -24.61446 -24.21638 -22.78958 -22.05627 -20.44220 -20.25795 -19.94939 -19.73519 -18.66642 -17.29532 -16.68879 -16.13373 -15.54499 -15.48394 -14.76309 -14.57832 -14.34905 -14.23663 -13.79572 -13.65000 -13.48445 -13.37180 -13.06756 -12.94889 -12.72510 -12.51211 -12.17033 -12.09910 -11.95904 -11.86279 -11.70391 -11.63947 -11.37042 -11.32097 -11.10944 -10.88561 -10.86132 -10.66821 -10.61338 -10.56747 -10.36888 -10.09140 -9.66425 -9.41446 -8.65323 -8.40370 -8.18408 -7.94217 -7.93897 -6.44433 -5.48870 -2.69016 2.49428 3.13091 3.27713 3.48025 3.53823 3.59596 3.65677 3.66414 4.73604 4.76385 4.78770 4.83138 4.92992 5.00363 5.11288 5.20893 5.22791 5.34042 5.40822 5.43918 5.45109 5.47367 5.57074 5.63394 5.71958 5.77719 5.80377 5.82369 5.84814 5.89135 5.91770 6.03898 6.09111 6.12912 6.16119 6.24618 6.37550 6.46021 6.48077 6.50208 6.52487 6.61082 6.80851 6.98316 7.08473 7.20539 7.41431 7.44906 7.59865 7.96644 8.07693 8.68347 9.10884 9.80601 10.36692 10.72175 11.75487 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.004794 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.615343 B = 5839.702728 C = 8475.753810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.691 5.691 5 C -0.179 4.179 6 H 0.062 0.938 7 C -0.025 4.025 8 N -0.945 5.945 9 Si 0.895 3.105 10 H -0.285 1.285 11 H -0.298 1.298 12 H -0.296 1.296 13 C 0.149 3.851 14 H 0.062 0.938 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.113 3.887 19 N -0.620 5.620 20 C 0.470 3.530 21 O -0.429 6.429 22 C -0.128 4.128 23 C -0.119 4.119 24 C 0.106 3.894 25 N -0.443 5.443 26 C -0.018 4.018 27 C -0.206 4.206 28 C -0.208 4.208 29 C -0.008 4.008 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.246 0.754 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.156 0.844 50 H 0.130 0.870 51 H 0.131 0.869 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 3.380 -16.150 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.073 3.927 3 H 0.078 0.922 4 N -0.332 5.332 5 C -0.311 4.311 6 H 0.080 0.920 7 C -0.219 4.219 8 N -0.597 5.597 9 Si 0.728 3.272 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.224 1.224 13 C 0.045 3.955 14 H 0.080 0.920 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.011 4.011 19 N -0.358 5.358 20 C 0.255 3.745 21 O -0.295 6.295 22 C -0.169 4.169 23 C -0.157 4.157 24 C -0.015 4.015 25 N -0.118 5.118 26 C -0.148 4.148 27 C -0.231 4.231 28 C -0.233 4.233 29 C -0.138 4.138 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.209 0.791 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.174 0.826 50 H 0.148 0.852 51 H 0.149 0.851 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.784 3.654 -15.732 17.928 hybrid contribution 0.120 -0.075 0.872 0.883 sum 7.904 3.579 -14.860 17.207 Atomic orbital electron populations 1.22566 0.99942 1.00122 1.00359 1.20420 0.90274 0.96936 0.85090 0.92185 1.42306 1.71793 1.17189 1.01873 1.19032 1.29848 0.98033 0.84208 0.91971 1.24507 1.03255 0.96979 0.97128 1.69646 1.49399 1.13195 1.27438 0.86252 0.76956 0.78312 0.85671 1.21030 1.22598 1.22353 1.21554 0.79108 0.99291 0.95550 0.91968 1.22064 1.00034 1.00462 0.94103 1.21507 0.95260 1.00873 0.97958 1.21910 0.96317 1.01334 0.97631 1.21543 0.96423 0.98264 0.84867 1.47859 1.06884 1.62560 1.18528 1.20346 0.88968 0.82569 0.82645 1.91183 1.68347 1.39308 1.30693 1.21516 0.94817 1.01897 0.98692 1.21688 0.91881 1.02753 0.99381 1.21914 0.95544 0.98127 0.85951 1.44142 1.49121 1.07099 1.11449 1.21751 1.08392 0.84775 0.99847 1.20833 1.09448 0.98235 0.94598 1.20853 1.09673 0.92956 0.99792 1.21862 1.06858 0.99008 0.86073 0.93958 0.92495 0.94574 0.79065 0.94380 0.91737 0.90863 0.92220 0.92009 0.91757 0.91440 0.90423 0.92246 0.90369 0.89961 0.89364 0.90800 0.89821 0.89539 0.82628 0.85174 0.85102 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 8.68 37.16 0.32 -2.84 16 2 C 0.18 3.72 1.78 -67.93 -0.12 3.60 16 3 H 0.06 1.36 6.47 -51.93 -0.34 1.03 16 4 N -0.69 -17.52 3.05 -53.42 -0.16 -17.68 16 5 C -0.18 -5.15 8.10 -15.06 -0.12 -5.27 16 6 H 0.06 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 8 N -0.94 -29.42 13.06 55.49 0.72 -28.70 16 9 Si 0.89 24.13 29.55 -169.99 -5.02 19.11 16 10 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16 12 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 13 C 0.15 2.41 2.57 -67.38 -0.17 2.24 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.13 -1.62 4.67 -26.39 -0.12 -1.74 16 16 C -0.12 -1.19 5.88 -26.69 -0.16 -1.35 16 17 C -0.13 -1.23 6.08 -26.61 -0.16 -1.40 16 18 C 0.11 1.22 6.32 -3.71 -0.02 1.20 16 19 N -0.62 -9.40 2.97 -164.96 -0.49 -9.89 16 20 C 0.47 8.33 7.35 -10.98 -0.08 8.25 16 21 O -0.43 -9.78 8.82 5.56 0.05 -9.73 16 22 C -0.13 -1.71 4.11 -27.88 -0.11 -1.82 16 23 C -0.12 -1.79 4.83 -26.73 -0.13 -1.92 16 24 C 0.11 1.25 6.09 -4.05 -0.02 1.22 16 25 N -0.44 -6.31 2.75 -117.13 -0.32 -6.63 16 26 C -0.02 -0.25 11.43 -16.75 -0.19 -0.44 16 27 C -0.21 -2.98 10.86 -39.78 -0.43 -3.41 16 28 C -0.21 -3.15 10.86 -39.78 -0.43 -3.58 16 29 C -0.01 -0.12 11.43 -16.75 -0.19 -0.31 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.18 7.88 -51.93 -0.41 0.77 16 32 H 0.04 0.56 6.82 -51.93 -0.35 0.20 16 33 H 0.38 10.31 7.69 -40.82 -0.31 10.00 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.89 6.83 -51.93 -0.35 0.53 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.70 5.96 -51.93 -0.31 0.39 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.80 7.45 -51.93 -0.39 0.41 16 44 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 45 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 46 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 47 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 50 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 51 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 52 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -34.52 401.29 -10.62 -45.14 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -9.19 Total: 10.75 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.25 Total: -8.42 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.25 Total: -62.90 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.05 Total: -9.73 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.11 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.52 -10.62 -45.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.402 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds