Wall clock time and date at job start Tue Mar 31 2020 17:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47379 * 2 1 4 4 N 1.46501 * 109.47419 * 120.00479 * 2 1 3 5 5 C 1.36938 * 119.99863 * 285.85454 * 4 2 1 6 6 H 1.08004 * 119.99942 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99895 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47321 * 119.99529 * 9 7 5 12 12 H 1.48501 * 109.47177 * 239.99048 * 9 7 5 13 13 C 1.53006 * 109.47030 * 240.00327 * 2 1 3 14 14 H 1.09005 * 109.69799 * 292.99863 * 13 2 1 15 15 C 1.53617 * 109.66370 * 53.59177 * 13 2 1 16 16 C 1.53042 * 109.23916 * 174.55133 * 15 13 2 17 17 C 1.53036 * 109.53798 * 298.50823 * 16 15 13 18 18 C 1.53193 * 109.31210 * 61.36834 * 17 16 15 19 19 N 1.46920 * 109.58602 * 172.64683 * 13 2 1 20 20 C 1.34777 * 120.63319 * 6.62070 * 19 13 2 21 21 O 1.21280 * 119.99867 * 354.04323 * 20 19 13 22 22 C 1.50704 * 120.00133 * 174.03664 * 20 19 13 23 23 C 1.53002 * 109.47182 * 180.02562 * 22 20 19 24 24 C 1.52992 * 109.47264 * 180.02562 * 23 22 20 25 25 N 1.46498 * 109.47363 * 179.97438 * 24 23 22 26 26 C 1.36347 * 125.63490 * 269.97731 * 25 24 23 27 27 C 1.34849 * 108.21758 * 180.02562 * 26 25 24 28 28 C 1.40895 * 107.41677 * 0.02562 * 27 26 25 29 29 C 1.34847 * 107.41758 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47147 * 174.39242 * 1 2 3 31 31 H 1.08997 * 109.46829 * 294.38646 * 1 2 3 32 32 H 1.08998 * 109.47493 * 54.39067 * 1 2 3 33 33 H 0.96997 * 120.00215 * 105.84650 * 4 2 1 34 34 H 0.96993 * 120.00267 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.63866 * 54.55899 * 15 13 2 36 36 H 1.09002 * 109.43103 * 294.41727 * 15 13 2 37 37 H 1.09010 * 109.45724 * 178.48895 * 16 15 13 38 38 H 1.08993 * 109.46327 * 58.53407 * 16 15 13 39 39 H 1.09001 * 109.49946 * 301.41626 * 17 16 15 40 40 H 1.09001 * 109.49815 * 181.31859 * 17 16 15 41 41 H 1.09006 * 109.58604 * 185.57890 * 18 17 16 42 42 H 1.08998 * 109.70371 * 65.22378 * 18 17 16 43 43 H 1.09004 * 109.46849 * 60.00554 * 22 20 19 44 44 H 1.08999 * 109.46896 * 300.00239 * 22 20 19 45 45 H 1.09000 * 109.47369 * 59.99532 * 23 22 20 46 46 H 1.09005 * 109.46823 * 300.00097 * 23 22 20 47 47 H 1.09007 * 109.47412 * 59.99767 * 24 23 22 48 48 H 1.08997 * 109.47421 * 299.99928 * 24 23 22 49 49 H 1.08006 * 125.89076 * 0.02562 * 26 25 24 50 50 H 1.08000 * 126.29214 * 180.26294 * 27 26 25 51 51 H 1.07998 * 126.28672 * 179.97438 * 28 27 26 52 52 H 1.08004 * 125.89208 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9412 -0.0796 2.4191 6 1 1.5206 0.9118 2.5018 7 6 2.4044 -0.7337 3.5524 8 7 2.9174 -1.9417 3.4515 9 14 2.2998 0.1002 5.2206 10 1 1.6878 1.4442 5.0647 11 1 1.4648 -0.7214 6.1333 12 1 3.6640 0.2409 5.7901 13 6 2.0400 -0.7212 -1.2493 14 1 1.7844 -1.7794 -1.1928 15 6 1.4028 -0.0997 -2.5013 16 6 2.0201 -0.7347 -3.7495 17 6 3.5227 -0.4463 -3.7806 18 6 4.1833 -1.0668 -2.5455 19 7 3.4984 -0.5712 -1.3438 20 6 4.1956 0.0052 -0.3446 21 8 3.6110 0.5024 0.5944 22 6 5.7016 0.0316 -0.3942 23 6 6.2407 0.7376 0.8515 24 6 7.7695 0.7650 0.8008 25 7 8.2856 1.4416 1.9933 26 6 8.5308 2.7782 2.1048 27 6 8.9973 3.0191 3.3468 28 6 9.0423 1.7860 4.0270 29 6 8.6011 0.8387 3.1748 30 1 -0.3634 -1.0228 -0.1004 31 1 -0.3633 0.4243 0.9360 32 1 -0.3634 0.5983 -0.8355 33 1 2.3963 -1.5809 1.1218 34 1 3.2408 -2.3989 4.2434 35 1 1.5865 0.9747 -2.5110 36 1 0.3287 -0.2855 -2.4919 37 1 1.5513 -0.3154 -4.6399 38 1 1.8574 -1.8122 -3.7270 39 1 3.6865 0.6313 -3.7781 40 1 3.9576 -0.8788 -4.6817 41 1 5.2346 -0.7809 -2.5110 42 1 4.1012 -2.1527 -2.5913 43 1 6.0264 0.5683 -1.2857 44 1 6.0820 -0.9894 -0.4260 45 1 5.9158 0.2007 1.7427 46 1 5.8602 1.7586 0.8837 47 1 8.0940 1.3023 -0.0904 48 1 8.1503 -0.2558 0.7684 49 1 8.3778 3.5166 1.3316 50 1 9.2804 3.9811 3.7480 51 1 9.3699 1.6286 5.0440 52 1 8.5133 -0.2159 3.3907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316880776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:12 Heat of formation + Delta-G solvation = 40.361347 kcal Electronic energy + Delta-G solvation = -30544.948181 eV Core-core repulsion = 26739.222314 eV Total energy + Delta-G solvation = -3805.725867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97670 -41.38275 -38.27863 -37.04344 -35.68773 -34.18121 -33.58408 -32.03715 -31.45056 -29.65311 -29.41575 -27.84875 -26.14238 -25.60003 -24.17019 -23.27666 -21.54043 -21.37471 -21.35767 -20.82860 -20.01627 -18.83090 -18.25241 -17.36278 -16.83381 -16.73169 -16.55637 -15.67641 -15.58162 -15.42384 -15.31295 -14.86420 -14.75671 -14.69862 -14.35794 -14.19347 -13.99347 -13.75544 -13.58807 -13.47495 -13.24988 -13.00680 -12.96261 -12.87664 -12.82458 -12.69115 -12.55598 -12.50703 -12.36118 -12.12545 -11.90248 -11.77475 -11.68290 -11.60847 -11.33756 -11.14451 -10.78411 -9.67857 -9.50202 -9.31585 -9.05961 -8.48401 -7.79178 -4.94709 1.37508 1.38189 1.41502 1.47949 2.08878 2.14090 2.18728 2.38126 2.62585 3.55091 3.66418 3.80010 3.86152 3.93249 3.98345 4.06734 4.19050 4.24075 4.31165 4.35022 4.37459 4.40089 4.40500 4.42847 4.55745 4.65303 4.69295 4.71953 4.76363 4.78499 4.85401 4.90837 4.96363 5.06127 5.09007 5.10463 5.20025 5.22424 5.30150 5.32071 5.37526 5.42799 5.43586 5.50570 5.58695 5.63917 6.01275 6.09567 6.33729 6.42890 6.55250 6.84449 7.49337 7.79569 8.27878 8.50652 9.45937 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.004794 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.615343 B = 5839.702728 C = 8475.753810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.036 0.964 4 N -0.693 5.693 5 C -0.158 4.158 6 H 0.049 0.951 7 C -0.086 4.086 8 N -0.974 5.974 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.306 1.306 13 C 0.152 3.848 14 H 0.053 0.947 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.104 3.896 19 N -0.619 5.619 20 C 0.461 3.539 21 O -0.498 6.498 22 C -0.117 4.117 23 C -0.105 4.105 24 C 0.112 3.888 25 N -0.449 5.449 26 C -0.020 4.020 27 C -0.227 4.227 28 C -0.228 4.228 29 C -0.033 4.033 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.363 0.637 34 H 0.239 0.761 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.027 0.973 46 H 0.050 0.950 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.185 0.815 50 H 0.146 0.854 51 H 0.138 0.862 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.116 3.769 -20.112 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.053 0.947 4 N -0.331 5.331 5 C -0.291 4.291 6 H 0.067 0.933 7 C -0.276 4.276 8 N -0.630 5.630 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.235 1.235 13 C 0.047 3.953 14 H 0.071 0.929 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.018 4.018 19 N -0.356 5.356 20 C 0.247 3.753 21 O -0.370 6.370 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.009 4.009 25 N -0.124 5.124 26 C -0.150 4.150 27 C -0.251 4.251 28 C -0.252 4.252 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.194 0.806 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.142 0.858 48 H 0.122 0.878 49 H 0.202 0.798 50 H 0.164 0.836 51 H 0.156 0.844 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.625 4.052 -19.781 21.957 hybrid contribution -0.174 -0.133 1.981 1.993 sum 8.451 3.919 -17.800 20.090 Atomic orbital electron populations 1.22425 0.98508 1.00752 1.00341 1.20498 0.91035 0.95772 0.85370 0.94651 1.42337 1.71807 1.16563 1.02442 1.19128 1.27235 0.96995 0.85739 0.93255 1.25036 1.04896 0.97928 0.99747 1.69763 1.51488 1.14319 1.27402 0.85420 0.76185 0.77797 0.82750 1.20382 1.22357 1.23486 1.21400 0.80448 0.98263 0.95149 0.92949 1.21996 1.00351 0.99974 0.93518 1.21515 0.95933 1.00929 0.96936 1.21893 0.95544 1.01320 0.97771 1.21920 0.97629 0.98756 0.83497 1.48017 1.06546 1.61517 1.19482 1.21216 0.90944 0.81030 0.82070 1.91151 1.69956 1.42693 1.33151 1.21497 0.91417 1.03385 0.99459 1.21472 0.94542 1.00523 0.97836 1.22045 0.92625 0.99771 0.86474 1.44371 1.48817 1.07442 1.11795 1.22291 1.07179 0.85110 1.00409 1.21176 1.10107 0.98704 0.95161 1.21169 1.09999 0.93634 1.00431 1.22116 1.07679 0.99547 0.86981 0.93641 0.95353 0.90964 0.80584 0.95201 0.92290 0.90224 0.90113 0.91662 0.91890 0.88344 0.87892 0.91630 0.85719 0.88126 0.95411 0.93115 0.85812 0.87829 0.79768 0.83615 0.84419 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.00 8.68 71.98 0.62 -5.37 16 2 C 0.18 7.56 1.78 44.99 0.08 7.64 16 3 H 0.04 1.68 6.47 -2.39 -0.02 1.66 16 4 N -0.69 -36.60 3.05 -322.93 -0.99 -37.59 16 5 C -0.16 -9.47 8.10 84.03 0.68 -8.79 16 6 H 0.05 3.04 7.83 -2.91 -0.02 3.02 16 7 C -0.09 -5.37 5.50 84.86 0.47 -4.91 16 8 N -0.97 -63.29 13.06 21.65 0.28 -63.00 16 9 Si 0.94 51.79 29.55 68.60 2.03 53.81 16 10 H -0.28 -14.75 7.11 99.48 0.71 -14.05 16 11 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 12 H -0.31 -17.15 7.11 99.48 0.71 -16.44 16 13 C 0.15 4.79 2.57 45.12 0.12 4.91 16 14 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 15 C -0.12 -2.73 4.67 30.82 0.14 -2.59 16 16 C -0.12 -1.84 5.88 30.62 0.18 -1.66 16 17 C -0.13 -1.74 6.08 30.67 0.19 -1.56 16 18 C 0.10 1.84 6.32 86.36 0.55 2.39 16 19 N -0.62 -17.81 2.97 -794.21 -2.36 -20.16 16 20 C 0.46 16.22 7.35 87.66 0.64 16.86 16 21 O -0.50 -23.70 8.82 -3.03 -0.03 -23.72 16 22 C -0.12 -2.88 4.11 29.85 0.12 -2.76 16 23 C -0.10 -3.17 4.83 30.59 0.15 -3.03 16 24 C 0.11 2.40 6.09 86.38 0.53 2.92 16 25 N -0.45 -12.49 2.75 -524.48 -1.44 -13.93 16 26 C -0.02 -0.52 11.43 83.21 0.95 0.43 16 27 C -0.23 -6.48 10.86 22.14 0.24 -6.24 16 28 C -0.23 -7.02 10.86 22.14 0.24 -6.78 16 29 C -0.03 -1.02 11.43 83.21 0.95 -0.06 16 30 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.03 1.19 7.88 -2.39 -0.02 1.17 16 32 H 0.07 2.15 6.82 -2.39 -0.02 2.13 16 33 H 0.36 20.75 7.69 -92.71 -0.71 20.04 16 34 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.71 6.83 -2.39 -0.02 1.69 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 1.31 5.96 -2.38 -0.01 1.30 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.12 1.94 7.45 -2.38 -0.02 1.92 16 44 H 0.10 2.16 8.12 -2.39 -0.02 2.14 16 45 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 46 H 0.05 1.73 8.10 -2.38 -0.02 1.71 16 47 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 50 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 51 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 52 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -82.21 401.29 4.52 -77.70 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.17 Total: 35.49 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 6.85 Total: -8.60 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -4.50 Total: -134.68 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.03 Total: -23.72 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.03 Total: 53.81 kcal Total: -82.21 4.52 -77.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.057 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds