Wall clock time and date at job start Tue Mar 31 2020 17:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47361 * 2 1 4 4 N 1.46504 * 109.47147 * 239.99650 * 2 1 3 5 5 C 1.36934 * 119.99894 * 84.99963 * 4 2 1 6 6 H 1.07998 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99746 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99799 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00378 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47150 * 89.99327 * 9 7 5 11 11 H 1.48497 * 109.47400 * 209.99636 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99833 * 9 7 5 13 13 C 1.53008 * 109.46922 * 119.99856 * 2 1 3 14 14 H 1.08995 * 109.58644 * 302.19142 * 13 2 1 15 15 C 1.53187 * 109.58608 * 62.61794 * 13 2 1 16 16 C 1.53040 * 109.31356 * 174.42253 * 15 13 2 17 17 C 1.53046 * 109.53867 * 298.63479 * 16 15 13 18 18 C 1.53194 * 109.31095 * 61.36131 * 17 16 15 19 19 N 1.46920 * 109.58602 * 181.90610 * 13 2 1 20 20 C 1.34783 * 120.63075 * 6.58134 * 19 13 2 21 21 O 1.21279 * 120.00050 * 5.86955 * 20 19 13 22 22 C 1.50699 * 120.00130 * 185.86384 * 20 19 13 23 23 C 1.52995 * 109.47330 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47081 * 180.02562 * 23 22 20 25 25 N 1.46508 * 109.46942 * 179.97438 * 24 23 22 26 26 C 1.36337 * 125.63624 * 269.69100 * 25 24 23 27 27 C 1.34856 * 108.21687 * 179.83149 * 26 25 24 28 28 C 1.40885 * 107.41437 * 0.42514 * 27 26 25 29 29 C 1.34850 * 107.42283 * 359.73769 * 28 27 26 30 30 H 1.08998 * 109.47499 * 304.84162 * 1 2 3 31 31 H 1.09000 * 109.47145 * 64.84180 * 1 2 3 32 32 H 1.09009 * 109.47235 * 184.83777 * 1 2 3 33 33 H 0.97003 * 120.00139 * 265.00129 * 4 2 1 34 34 H 0.96996 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.50003 * 294.37495 * 15 13 2 36 36 H 1.09002 * 109.49875 * 54.47192 * 15 13 2 37 37 H 1.08996 * 109.46490 * 178.61362 * 16 15 13 38 38 H 1.09006 * 109.45743 * 58.65307 * 16 15 13 39 39 H 1.09000 * 109.49247 * 301.41485 * 17 16 15 40 40 H 1.08994 * 109.49687 * 181.31442 * 17 16 15 41 41 H 1.08994 * 109.58425 * 185.57758 * 18 17 16 42 42 H 1.09005 * 109.70093 * 65.22339 * 18 17 16 43 43 H 1.09000 * 109.47396 * 300.00669 * 22 20 19 44 44 H 1.09005 * 109.46604 * 60.00202 * 22 20 19 45 45 H 1.09007 * 109.46887 * 300.00376 * 23 22 20 46 46 H 1.08997 * 109.47262 * 60.00026 * 23 22 20 47 47 H 1.09000 * 109.47132 * 299.99311 * 24 23 22 48 48 H 1.08993 * 109.47351 * 60.00155 * 24 23 22 49 49 H 1.08004 * 125.89179 * 359.96349 * 26 25 24 50 50 H 1.07996 * 126.28825 * 180.16235 * 27 26 25 51 51 H 1.08008 * 126.28724 * 179.73305 * 28 27 26 52 52 H 1.07997 * 125.88897 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0403 -2.4242 7 6 2.6123 -0.6620 -3.5089 8 7 2.7385 -0.0053 -4.6426 9 14 3.0566 -2.4743 -3.4250 10 1 1.8594 -3.2928 -3.7448 11 1 4.1323 -2.7663 -4.4061 12 1 3.5310 -2.8048 -2.0572 13 6 2.0399 -0.7213 1.2493 14 1 1.6459 -0.2321 2.1401 15 6 1.5853 -2.1838 1.2195 16 6 2.2129 -2.9331 2.3971 17 6 3.7378 -2.8987 2.2715 18 6 4.2168 -1.4442 2.3132 19 7 3.5084 -0.6830 1.2752 20 6 4.1928 0.0363 0.3637 21 8 3.5978 0.7440 -0.4213 22 6 5.6972 -0.0387 0.3198 23 6 6.2207 0.8668 -0.7968 24 6 7.7481 0.7902 -0.8416 25 7 8.2494 1.6568 -1.9113 26 6 8.4634 1.2802 -3.2040 27 6 8.9211 2.3507 -3.8847 28 6 9.0016 3.4248 -2.9766 29 6 8.5845 2.9716 -1.7770 30 1 -0.3634 0.5871 0.8434 31 1 -0.3633 0.4369 -0.9302 32 1 -0.3634 -1.0241 0.0867 33 1 2.2490 -1.6319 -1.1526 34 1 3.0618 -0.4626 -5.4346 35 1 0.4989 -2.2288 1.2970 36 1 1.9031 -2.6446 0.2842 37 1 1.8714 -3.9682 2.3925 38 1 1.9146 -2.4567 3.3311 39 1 4.0352 -3.3527 1.3262 40 1 4.1834 -3.4523 3.0978 41 1 5.2898 -1.4074 2.1252 42 1 4.0023 -1.0145 3.2918 43 1 6.1055 0.2904 1.2754 44 1 6.0043 -1.0669 0.1284 45 1 5.8125 0.5380 -1.7526 46 1 5.9136 1.8949 -0.6049 47 1 8.1566 1.1188 0.1140 48 1 8.0549 -0.2379 -1.0337 49 1 8.2934 0.2952 -3.6130 50 1 9.1823 2.3781 -4.9322 51 1 9.3360 4.4272 -3.2002 52 1 8.5256 3.5503 -0.8671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316880777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:18 Heat of formation + Delta-G solvation = 60.110687 kcal Electronic energy + Delta-G solvation = -30885.780644 eV Core-core repulsion = 27080.911172 eV Total energy + Delta-G solvation = -3804.869471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86938 -40.26264 -37.20449 -35.59716 -34.51363 -32.58799 -32.19315 -30.92872 -30.01454 -28.52391 -28.44655 -26.77628 -24.69953 -23.99804 -22.97612 -22.01431 -20.83112 -20.22605 -19.76384 -19.68552 -18.53663 -17.46313 -17.13332 -16.25728 -15.68844 -15.50253 -14.71957 -14.56083 -14.42366 -14.32533 -13.83516 -13.80051 -13.60654 -13.48168 -13.21509 -12.90624 -12.77708 -12.43936 -12.30417 -12.22297 -11.96531 -11.82830 -11.73815 -11.55998 -11.49399 -11.43408 -11.37226 -10.95753 -10.81538 -10.78610 -10.63404 -10.61768 -10.48134 -10.15209 -9.90461 -9.30663 -8.78036 -8.37341 -8.21049 -8.05392 -7.90237 -6.91865 -5.50209 -2.79769 2.52194 3.12071 3.29177 3.32045 3.40324 3.43815 3.46666 3.51325 4.67105 4.74277 4.76261 4.77416 4.88424 4.96570 5.04980 5.17465 5.22852 5.30385 5.34222 5.36775 5.40180 5.46879 5.51448 5.52758 5.59404 5.64792 5.74233 5.79354 5.80092 5.84064 5.88720 5.97259 6.00275 6.09438 6.13614 6.20642 6.32566 6.40920 6.45050 6.52179 6.55373 6.59210 6.65282 6.88899 7.02467 7.24197 7.33030 7.48085 7.62522 7.93047 8.29337 8.67206 8.95596 9.47396 10.19265 10.40545 11.70166 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.004526 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.664963 B = 6185.079791 C = 7544.156356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.173 3.827 3 H 0.093 0.907 4 N -0.733 5.733 5 C -0.180 4.180 6 H 0.087 0.913 7 C -0.009 4.009 8 N -0.944 5.944 9 Si 0.871 3.129 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.286 1.286 13 C 0.145 3.855 14 H 0.065 0.935 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.113 3.887 19 N -0.619 5.619 20 C 0.495 3.505 21 O -0.449 6.449 22 C -0.132 4.132 23 C -0.120 4.120 24 C 0.107 3.893 25 N -0.444 5.444 26 C -0.007 4.007 27 C -0.206 4.206 28 C -0.205 4.205 29 C -0.018 4.018 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.353 0.647 34 H 0.252 0.748 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.158 0.842 50 H 0.132 0.868 51 H 0.131 0.869 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -2.613 17.353 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.064 3.936 3 H 0.111 0.889 4 N -0.376 5.376 5 C -0.311 4.311 6 H 0.105 0.895 7 C -0.202 4.202 8 N -0.595 5.595 9 Si 0.704 3.296 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.213 1.213 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.173 4.173 16 C -0.155 4.155 17 C -0.175 4.175 18 C -0.011 4.011 19 N -0.357 5.357 20 C 0.281 3.719 21 O -0.318 6.318 22 C -0.173 4.173 23 C -0.159 4.159 24 C -0.015 4.015 25 N -0.119 5.119 26 C -0.137 4.137 27 C -0.230 4.230 28 C -0.230 4.230 29 C -0.148 4.148 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.187 0.813 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.175 0.825 50 H 0.150 0.850 51 H 0.148 0.852 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.251 -2.233 16.989 19.019 hybrid contribution 0.330 -1.756 -0.024 1.786 sum 8.581 -3.989 16.966 19.426 Atomic orbital electron populations 1.22589 0.99763 1.00137 1.00740 1.20697 0.90330 0.98398 0.84203 0.88910 1.42792 1.79221 1.08436 1.07187 1.18944 1.32692 0.95005 0.84466 0.89490 1.24531 1.03387 0.96228 0.96052 1.69674 1.55019 1.34661 1.00133 0.86735 0.77980 0.88764 0.76126 1.21805 1.22340 1.21267 1.21563 0.79155 0.95488 0.99707 0.91745 1.22016 1.00611 0.95950 0.98707 1.21505 0.95037 1.00289 0.98654 1.21932 0.96683 0.96661 1.02262 1.21578 0.96782 0.91352 0.91405 1.47954 1.06174 1.50159 1.31388 1.20344 0.89110 0.81804 0.80688 1.90955 1.67910 1.36714 1.36178 1.21560 0.94476 1.01468 0.99811 1.21711 0.92229 1.01222 1.00713 1.21889 0.95564 0.94531 0.89531 1.44107 1.49472 1.09498 1.08803 1.21854 1.07441 1.00611 0.83838 1.20851 1.09421 0.93367 0.99390 1.20832 1.09643 0.99361 0.93162 1.21735 1.08085 0.84799 1.00194 0.94575 0.92088 0.93978 0.81344 0.93728 0.90743 0.91326 0.92167 0.92092 0.91589 0.91340 0.90319 0.92066 0.90024 0.89832 0.89188 0.90517 0.89785 0.89670 0.82453 0.85046 0.85151 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.32 37.16 0.35 -2.72 16 2 C 0.17 3.39 1.89 -67.93 -0.13 3.26 16 3 H 0.09 2.06 5.88 -52.16 -0.31 1.76 16 4 N -0.73 -17.30 3.27 -53.42 -0.17 -17.48 16 5 C -0.18 -5.18 8.58 -15.06 -0.13 -5.31 16 6 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 8 N -0.94 -30.85 13.97 55.49 0.78 -30.08 16 9 Si 0.87 22.91 27.74 -169.99 -4.71 18.19 16 10 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 11 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 12 H -0.29 -7.04 6.52 56.52 0.37 -6.68 16 13 C 0.14 2.22 2.75 -67.60 -0.19 2.03 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -1.89 4.81 -26.61 -0.13 -2.02 16 16 C -0.12 -1.26 5.88 -26.69 -0.16 -1.42 16 17 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 18 C 0.11 1.17 6.35 -3.71 -0.02 1.14 16 19 N -0.62 -9.04 2.96 -165.22 -0.49 -9.53 16 20 C 0.49 8.47 7.11 -10.98 -0.08 8.40 16 21 O -0.45 -9.86 9.13 5.56 0.05 -9.81 16 22 C -0.13 -1.72 4.06 -27.89 -0.11 -1.83 16 23 C -0.12 -1.80 4.83 -26.73 -0.13 -1.93 16 24 C 0.11 1.26 6.09 -4.04 -0.02 1.23 16 25 N -0.44 -6.39 2.75 -117.12 -0.32 -6.71 16 26 C -0.01 -0.11 11.43 -16.75 -0.19 -0.31 16 27 C -0.21 -3.17 10.86 -39.78 -0.43 -3.60 16 28 C -0.21 -3.00 10.86 -39.78 -0.43 -3.43 16 29 C -0.02 -0.26 11.43 -16.75 -0.19 -0.45 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.70 6.40 -51.92 -0.33 0.37 16 33 H 0.35 8.36 3.70 -40.82 -0.15 8.21 16 34 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 35 H 0.07 0.99 6.70 -51.93 -0.35 0.64 16 36 H 0.07 1.17 6.22 -51.93 -0.32 0.85 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 44 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 45 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 46 H 0.08 1.26 8.10 -51.93 -0.42 0.83 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 50 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 51 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 52 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -35.52 395.06 -10.11 -45.63 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -8.93 Total: 12.71 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.25 Total: -8.88 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.21 Total: -63.80 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.52 -10.11 -45.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.738 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds