Wall clock time and date at job start Tue Mar 31 2020 17:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47361 * 2 1 4 4 N 1.46504 * 109.47147 * 239.99650 * 2 1 3 5 5 C 1.36934 * 119.99894 * 84.99963 * 4 2 1 6 6 H 1.07998 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99746 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99799 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00378 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47150 * 89.99327 * 9 7 5 11 11 H 1.48497 * 109.47400 * 209.99636 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99833 * 9 7 5 13 13 C 1.53008 * 109.46922 * 119.99856 * 2 1 3 14 14 H 1.08995 * 109.58644 * 302.19142 * 13 2 1 15 15 C 1.53187 * 109.58608 * 62.61794 * 13 2 1 16 16 C 1.53040 * 109.31356 * 174.42253 * 15 13 2 17 17 C 1.53046 * 109.53867 * 298.63479 * 16 15 13 18 18 C 1.53194 * 109.31095 * 61.36131 * 17 16 15 19 19 N 1.46920 * 109.58602 * 181.90610 * 13 2 1 20 20 C 1.34783 * 120.63075 * 6.58134 * 19 13 2 21 21 O 1.21279 * 120.00050 * 5.86955 * 20 19 13 22 22 C 1.50699 * 120.00130 * 185.86384 * 20 19 13 23 23 C 1.52995 * 109.47330 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47081 * 180.02562 * 23 22 20 25 25 N 1.46508 * 109.46942 * 179.97438 * 24 23 22 26 26 C 1.36337 * 125.63624 * 269.69100 * 25 24 23 27 27 C 1.34856 * 108.21687 * 179.83149 * 26 25 24 28 28 C 1.40885 * 107.41437 * 0.42514 * 27 26 25 29 29 C 1.34850 * 107.42283 * 359.73769 * 28 27 26 30 30 H 1.08998 * 109.47499 * 304.84162 * 1 2 3 31 31 H 1.09000 * 109.47145 * 64.84180 * 1 2 3 32 32 H 1.09009 * 109.47235 * 184.83777 * 1 2 3 33 33 H 0.97003 * 120.00139 * 265.00129 * 4 2 1 34 34 H 0.96996 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.50003 * 294.37495 * 15 13 2 36 36 H 1.09002 * 109.49875 * 54.47192 * 15 13 2 37 37 H 1.08996 * 109.46490 * 178.61362 * 16 15 13 38 38 H 1.09006 * 109.45743 * 58.65307 * 16 15 13 39 39 H 1.09000 * 109.49247 * 301.41485 * 17 16 15 40 40 H 1.08994 * 109.49687 * 181.31442 * 17 16 15 41 41 H 1.08994 * 109.58425 * 185.57758 * 18 17 16 42 42 H 1.09005 * 109.70093 * 65.22339 * 18 17 16 43 43 H 1.09000 * 109.47396 * 300.00669 * 22 20 19 44 44 H 1.09005 * 109.46604 * 60.00202 * 22 20 19 45 45 H 1.09007 * 109.46887 * 300.00376 * 23 22 20 46 46 H 1.08997 * 109.47262 * 60.00026 * 23 22 20 47 47 H 1.09000 * 109.47132 * 299.99311 * 24 23 22 48 48 H 1.08993 * 109.47351 * 60.00155 * 24 23 22 49 49 H 1.08004 * 125.89179 * 359.96349 * 26 25 24 50 50 H 1.07996 * 126.28825 * 180.16235 * 27 26 25 51 51 H 1.08008 * 126.28724 * 179.73305 * 28 27 26 52 52 H 1.07997 * 125.88897 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0403 -2.4242 7 6 2.6123 -0.6620 -3.5089 8 7 2.7385 -0.0053 -4.6426 9 14 3.0566 -2.4743 -3.4250 10 1 1.8594 -3.2928 -3.7448 11 1 4.1323 -2.7663 -4.4061 12 1 3.5310 -2.8048 -2.0572 13 6 2.0399 -0.7213 1.2493 14 1 1.6459 -0.2321 2.1401 15 6 1.5853 -2.1838 1.2195 16 6 2.2129 -2.9331 2.3971 17 6 3.7378 -2.8987 2.2715 18 6 4.2168 -1.4442 2.3132 19 7 3.5084 -0.6830 1.2752 20 6 4.1928 0.0363 0.3637 21 8 3.5978 0.7440 -0.4213 22 6 5.6972 -0.0387 0.3198 23 6 6.2207 0.8668 -0.7968 24 6 7.7481 0.7902 -0.8416 25 7 8.2494 1.6568 -1.9113 26 6 8.4634 1.2802 -3.2040 27 6 8.9211 2.3507 -3.8847 28 6 9.0016 3.4248 -2.9766 29 6 8.5845 2.9716 -1.7770 30 1 -0.3634 0.5871 0.8434 31 1 -0.3633 0.4369 -0.9302 32 1 -0.3634 -1.0241 0.0867 33 1 2.2490 -1.6319 -1.1526 34 1 3.0618 -0.4626 -5.4346 35 1 0.4989 -2.2288 1.2970 36 1 1.9031 -2.6446 0.2842 37 1 1.8714 -3.9682 2.3925 38 1 1.9146 -2.4567 3.3311 39 1 4.0352 -3.3527 1.3262 40 1 4.1834 -3.4523 3.0978 41 1 5.2898 -1.4074 2.1252 42 1 4.0023 -1.0145 3.2918 43 1 6.1055 0.2904 1.2754 44 1 6.0043 -1.0669 0.1284 45 1 5.8125 0.5380 -1.7526 46 1 5.9136 1.8949 -0.6049 47 1 8.1566 1.1188 0.1140 48 1 8.0549 -0.2379 -1.0337 49 1 8.2934 0.2952 -3.6130 50 1 9.1823 2.3781 -4.9322 51 1 9.3360 4.4272 -3.2002 52 1 8.5256 3.5503 -0.8671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316880777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:16 Heat of formation + Delta-G solvation = 38.241457 kcal Electronic energy + Delta-G solvation = -30886.728965 eV Core-core repulsion = 27080.911172 eV Total energy + Delta-G solvation = -3805.817792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.97387 -41.50241 -38.41863 -37.09215 -35.75036 -34.18659 -33.64002 -32.13118 -31.68332 -29.91324 -29.64359 -27.88901 -25.89514 -25.48554 -24.51004 -23.24775 -21.93499 -21.35148 -21.11739 -20.82893 -19.89229 -19.34561 -18.32071 -17.50042 -16.88292 -16.69804 -16.45774 -15.85939 -15.59637 -15.46666 -15.30433 -14.97706 -14.83971 -14.73461 -14.52726 -14.27194 -14.07264 -13.90812 -13.66185 -13.39029 -13.27317 -13.15718 -12.95446 -12.91814 -12.81056 -12.67318 -12.64078 -12.57005 -12.39177 -12.00262 -11.91485 -11.80615 -11.75517 -11.61331 -11.43167 -11.27233 -10.88836 -9.64109 -9.49211 -9.39992 -9.04748 -8.91600 -7.86231 -5.11381 1.24007 1.31145 1.37471 1.38034 2.01669 2.12368 2.15541 2.34771 2.52608 3.45058 3.60581 3.76272 3.79159 3.89412 3.94117 3.99646 4.03646 4.22249 4.24603 4.29585 4.34779 4.37941 4.38589 4.41708 4.51349 4.59155 4.66632 4.71327 4.75059 4.78707 4.81346 4.88162 4.95126 4.99689 5.03799 5.08192 5.15303 5.24192 5.26396 5.30984 5.38698 5.43425 5.43839 5.52447 5.55776 5.92363 6.00155 6.10481 6.34145 6.35309 6.56350 6.76632 7.24411 7.70893 8.01703 8.22205 9.38613 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.004526 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.664963 B = 6185.079791 C = 7544.156356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 H 0.061 0.939 4 N -0.726 5.726 5 C -0.143 4.143 6 H 0.036 0.964 7 C -0.086 4.086 8 N -1.000 6.000 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.304 1.304 12 H -0.260 1.260 13 C 0.149 3.851 14 H 0.092 0.908 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.135 4.135 18 C 0.105 3.895 19 N -0.618 5.618 20 C 0.481 3.519 21 O -0.517 6.517 22 C -0.122 4.122 23 C -0.108 4.108 24 C 0.111 3.889 25 N -0.450 5.450 26 C -0.034 4.034 27 C -0.227 4.227 28 C -0.227 4.227 29 C -0.018 4.018 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.356 0.644 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.026 0.974 46 H 0.053 0.947 47 H 0.127 0.873 48 H 0.102 0.898 49 H 0.160 0.840 50 H 0.137 0.863 51 H 0.147 0.853 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.924 -5.036 22.490 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.078 0.922 4 N -0.369 5.369 5 C -0.275 4.275 6 H 0.054 0.946 7 C -0.274 4.274 8 N -0.656 5.656 9 Si 0.776 3.224 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.185 1.185 13 C 0.045 3.955 14 H 0.109 0.891 15 C -0.170 4.170 16 C -0.150 4.150 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.354 5.354 20 C 0.269 3.731 21 O -0.391 6.391 22 C -0.163 4.163 23 C -0.147 4.147 24 C -0.010 4.010 25 N -0.125 5.125 26 C -0.165 4.165 27 C -0.251 4.251 28 C -0.251 4.251 29 C -0.149 4.149 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.190 0.810 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.149 0.851 44 H 0.120 0.880 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.145 0.855 48 H 0.121 0.879 49 H 0.178 0.822 50 H 0.155 0.845 51 H 0.164 0.836 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.484 -4.705 22.250 24.640 hybrid contribution -0.140 -0.853 -1.509 1.738 sum 9.345 -5.558 20.741 23.418 Atomic orbital electron populations 1.22443 0.98355 1.01333 1.00231 1.20771 0.91171 0.97261 0.84904 0.92153 1.42672 1.79097 1.08285 1.06869 1.18672 1.29710 0.92801 0.86358 0.94610 1.25246 1.05090 1.01382 0.95697 1.69899 1.57797 1.36835 1.01037 0.85508 0.77331 0.82512 0.77019 1.21432 1.23189 1.18482 1.21443 0.80122 0.96179 0.97753 0.89061 1.21988 1.01364 0.94808 0.98876 1.21501 0.95308 1.00491 0.97672 1.21946 0.96307 0.96569 1.02508 1.21975 0.97678 0.90999 0.91014 1.48109 1.05972 1.49658 1.31670 1.21160 0.90941 0.80897 0.80109 1.90957 1.69501 1.39690 1.38993 1.21561 0.91491 1.02037 1.01171 1.21504 0.94652 1.00118 0.98417 1.22057 0.92841 0.95448 0.90659 1.44352 1.49107 1.10097 1.08897 1.22082 1.08382 1.01044 0.84952 1.21165 1.09795 0.94030 1.00123 1.21178 1.10414 1.00037 0.93508 1.22297 1.06654 0.84770 1.01133 0.91275 0.95772 0.92466 0.80991 0.94490 0.90036 0.94658 0.91171 0.89856 0.93781 0.87956 0.88069 0.89326 0.85087 0.88015 0.95512 0.92836 0.85535 0.87950 0.82217 0.84506 0.83557 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 9.32 71.98 0.67 -5.15 16 2 C 0.17 6.61 1.89 44.99 0.08 6.69 16 3 H 0.06 2.84 5.88 -6.05 -0.04 2.80 16 4 N -0.73 -35.26 3.27 -322.94 -1.06 -36.32 16 5 C -0.14 -8.75 8.58 84.03 0.72 -8.03 16 6 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 7 C -0.09 -5.48 5.50 84.86 0.47 -5.01 16 8 N -1.00 -69.78 13.97 21.65 0.30 -69.48 16 9 Si 0.95 49.37 27.74 68.60 1.90 51.27 16 10 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 11 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 12 H -0.26 -12.18 6.52 99.48 0.65 -11.53 16 13 C 0.15 4.21 2.75 44.98 0.12 4.33 16 14 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 15 C -0.13 -3.29 4.81 30.67 0.15 -3.14 16 16 C -0.11 -1.84 5.88 30.62 0.18 -1.66 16 17 C -0.14 -2.01 6.08 30.67 0.19 -1.83 16 18 C 0.10 1.59 6.35 86.36 0.55 2.14 16 19 N -0.62 -16.23 2.96 -795.03 -2.36 -18.59 16 20 C 0.48 16.04 7.11 87.66 0.62 16.66 16 21 O -0.52 -23.85 9.13 -3.03 -0.03 -23.88 16 22 C -0.12 -2.87 4.06 29.85 0.12 -2.74 16 23 C -0.11 -3.25 4.83 30.59 0.15 -3.10 16 24 C 0.11 2.38 6.09 86.38 0.53 2.90 16 25 N -0.45 -12.75 2.75 -524.47 -1.44 -14.19 16 26 C -0.03 -1.10 11.43 83.22 0.95 -0.15 16 27 C -0.23 -7.26 10.86 22.14 0.24 -7.02 16 28 C -0.23 -6.65 10.86 22.14 0.24 -6.41 16 29 C -0.02 -0.50 11.43 83.21 0.95 0.45 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.84 6.40 -2.38 -0.02 1.83 16 33 H 0.36 16.86 3.70 -92.71 -0.34 16.52 16 34 H 0.25 16.55 8.31 -92.71 -0.77 15.78 16 35 H 0.08 1.89 6.70 -2.39 -0.02 1.87 16 36 H 0.03 1.12 6.22 -2.39 -0.01 1.10 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.11 5.93 -2.39 -0.01 1.09 16 42 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.13 1.80 7.70 -2.39 -0.02 1.78 16 44 H 0.10 2.07 7.93 -2.38 -0.02 2.05 16 45 H 0.03 1.12 8.10 -2.38 -0.02 1.10 16 46 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 47 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 50 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 51 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 52 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -88.38 395.06 4.72 -83.66 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.46 Total: 38.59 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 6.93 Total: -11.07 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -4.55 Total: -138.58 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.03 Total: -23.88 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.90 Total: 51.27 kcal Total: -88.38 4.72 -83.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316880777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.904 kcal (2) G-P(sol) polarization free energy of solvation -88.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds