Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47580 * 2 1 4 4 C 1.46901 * 110.99857 * 169.99912 * 3 2 1 5 5 C 1.46897 * 110.99809 * 293.95532 * 3 2 1 6 6 H 1.09002 * 109.47126 * 316.74907 * 5 3 2 7 7 C 1.50699 * 109.47190 * 76.75400 * 5 3 2 8 8 O 1.21278 * 119.99911 * 29.06347 * 7 5 3 9 9 N 1.34777 * 119.99900 * 209.06072 * 7 5 3 10 10 C 1.46498 * 119.99899 * 0.02562 * 9 7 5 11 11 C 1.46500 * 120.00142 * 179.97438 * 9 7 5 12 12 H 1.09001 * 109.46854 * 0.02562 * 11 9 7 13 13 C 1.52992 * 109.47377 * 240.00452 * 11 9 7 14 14 C 1.53003 * 109.47098 * 119.99944 * 11 9 7 15 15 N 1.46498 * 109.47172 * 305.00741 * 14 11 9 16 16 C 1.36939 * 119.99900 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00419 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46951 * 59.99576 * 20 18 16 22 22 H 1.48499 * 109.47035 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46993 * 299.99888 * 20 18 16 24 24 C 1.50703 * 109.46686 * 196.75220 * 5 3 2 25 25 C 1.38232 * 120.00095 * 311.59547 * 24 5 3 26 26 C 1.38240 * 119.99805 * 179.78899 * 25 24 5 27 27 C 1.38234 * 120.00066 * 0.44387 * 26 25 24 28 28 C 1.38234 * 119.99750 * 359.81237 * 27 26 25 29 29 C 1.38234 * 119.99784 * 131.87568 * 24 5 3 30 30 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47416 * 300.00438 * 1 2 3 32 32 H 1.09003 * 109.47018 * 59.99931 * 1 2 3 33 33 H 1.09005 * 109.47424 * 239.99853 * 2 1 3 34 34 H 1.09003 * 109.47018 * 120.00069 * 2 1 3 35 35 H 1.09001 * 109.46596 * 190.62442 * 4 3 2 36 36 H 1.09000 * 109.47251 * 310.62065 * 4 3 2 37 37 H 1.08992 * 109.47200 * 70.62656 * 4 3 2 38 38 H 1.08995 * 109.47597 * 269.99670 * 10 9 7 39 39 H 1.09002 * 109.47461 * 30.00012 * 10 9 7 40 40 H 1.09007 * 109.47188 * 149.99479 * 10 9 7 41 41 H 1.09001 * 109.47463 * 300.00036 * 13 11 9 42 42 H 1.08998 * 109.47345 * 59.99713 * 13 11 9 43 43 H 1.09006 * 109.47393 * 180.02562 * 13 11 9 44 44 H 1.09006 * 109.46504 * 64.99906 * 14 11 9 45 45 H 1.08997 * 109.47438 * 184.99930 * 14 11 9 46 46 H 0.97001 * 119.99866 * 359.97438 * 15 14 11 47 47 H 0.96997 * 120.00408 * 180.02562 * 19 18 16 48 48 H 1.07996 * 119.99858 * 0.02562 * 25 24 5 49 49 H 1.08000 * 119.99599 * 180.28149 * 26 25 24 50 50 H 1.07995 * 120.00190 * 179.83172 * 27 26 25 51 51 H 1.08006 * 120.00126 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.99963 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4686 1.4310 0.2382 5 6 1.6703 2.0669 -1.2533 6 1 1.8549 1.3985 -2.0943 7 6 0.2132 2.4507 -1.2270 8 8 -0.3332 2.6845 -0.1698 9 7 -0.4825 2.5343 -2.3782 10 6 0.1775 2.2514 -3.6551 11 6 -1.8991 2.9069 -2.3527 12 1 -2.2115 3.0771 -1.3223 13 6 -2.7345 1.7778 -2.9594 14 6 -2.1046 4.1868 -3.1654 15 7 -1.2155 5.2351 -2.6586 16 6 -1.2237 6.4774 -3.2346 17 1 -1.8854 6.6843 -4.0627 18 6 -0.3817 7.4708 -2.7540 19 7 0.4243 7.2189 -1.7445 20 14 -0.3924 9.1653 -3.5402 21 1 -1.7493 9.7571 -3.4224 22 1 0.5897 10.0383 -2.8483 23 1 -0.0265 9.0478 -4.9746 24 6 2.5138 3.3068 -1.4025 25 6 2.6355 4.1911 -0.3471 26 6 3.4128 5.3262 -0.4826 27 6 4.0609 5.5817 -1.6765 28 6 3.9348 4.7000 -2.7337 29 6 3.1611 3.5627 -2.5968 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.7742 2.4612 0.4208 36 1 3.7136 0.8199 1.1069 37 1 3.9929 1.0461 -0.6364 38 1 0.6010 3.1718 -4.0570 39 1 0.9733 1.5230 -3.4993 40 1 -0.5507 1.8488 -4.3593 41 1 -2.4221 1.6080 -3.9897 42 1 -2.5881 0.8660 -2.3804 43 1 -3.7885 2.0553 -2.9408 44 1 -1.8764 3.9923 -4.2133 45 1 -3.1405 4.5132 -3.0736 46 1 -0.6215 5.0494 -1.9145 47 1 1.0124 7.9132 -1.4084 48 1 2.1265 3.9932 0.5846 49 1 3.5115 6.0148 0.3436 50 1 4.6659 6.4698 -1.7833 51 1 4.4408 4.8998 -3.6668 52 1 3.0626 2.8739 -3.4228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319559339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = 35.188894 kcal Electronic energy + Delta-G solvation = -31867.492167 eV Core-core repulsion = 28061.542005 eV Total energy + Delta-G solvation = -3805.950162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.50167 -38.53541 -37.11749 -35.83203 -33.89439 -32.40701 -31.57729 -30.49576 -30.00216 -29.75802 -27.42734 -26.56726 -25.49992 -24.33718 -22.62393 -22.25298 -21.68199 -21.58394 -19.87436 -18.49633 -17.05562 -16.97262 -16.71940 -16.02755 -15.58561 -15.13624 -14.68975 -14.49990 -14.29844 -14.14260 -13.87018 -13.57141 -13.27873 -13.14805 -12.90557 -12.74920 -12.71865 -12.53044 -12.38620 -12.23232 -12.12055 -11.96471 -11.81024 -11.69705 -11.39309 -11.36822 -11.24955 -10.90353 -10.77254 -10.69588 -10.54056 -10.45278 -10.37048 -9.98842 -9.58449 -9.33555 -8.75818 -8.33693 -8.17500 -8.12712 -8.06869 -6.76388 -5.59672 -2.88831 1.79565 1.98919 3.19331 3.28102 3.48768 3.53517 3.53896 4.02551 4.36467 4.67884 4.83842 4.93817 5.06810 5.08667 5.25951 5.34863 5.39552 5.44482 5.47309 5.48929 5.51408 5.55719 5.62255 5.63787 5.66386 5.70681 5.78960 5.85627 5.99107 6.03072 6.04366 6.08375 6.14595 6.16500 6.20928 6.27023 6.43511 6.47479 6.48254 6.55737 6.57244 6.82693 6.86968 6.92480 7.06980 7.08200 7.16044 7.20593 7.52787 7.79904 7.89111 8.55609 8.77242 9.67740 10.27270 10.63803 11.60342 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005910 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.093394 B = 4736.849021 C = 6556.564204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 N -0.518 5.518 4 C 0.024 3.976 5 C 0.114 3.886 6 H 0.063 0.937 7 C 0.536 3.464 8 O -0.517 6.517 9 N -0.599 5.599 10 C 0.078 3.922 11 C 0.128 3.872 12 H 0.099 0.901 13 C -0.155 4.155 14 C 0.145 3.855 15 N -0.724 5.724 16 C -0.244 4.244 17 H 0.064 0.936 18 C -0.006 4.006 19 N -0.913 5.913 20 Si 0.898 3.102 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.289 1.289 24 C -0.085 4.085 25 C -0.069 4.069 26 C -0.101 4.101 27 C -0.102 4.102 28 C -0.120 4.120 29 C -0.107 4.107 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.252 0.748 48 H 0.126 0.874 49 H 0.116 0.884 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -15.726 -0.664 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 N -0.243 5.243 4 C -0.124 4.124 5 C 0.003 3.997 6 H 0.080 0.920 7 C 0.323 3.677 8 O -0.391 6.391 9 N -0.333 5.333 10 C -0.065 4.065 11 C 0.024 3.976 12 H 0.117 0.883 13 C -0.214 4.214 14 C 0.016 3.984 15 N -0.369 5.369 16 C -0.375 4.375 17 H 0.082 0.918 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.730 3.270 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.086 4.086 25 C -0.087 4.087 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.138 4.138 29 C -0.126 4.126 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.222 0.778 47 H 0.062 0.938 48 H 0.144 0.856 49 H 0.134 0.866 50 H 0.131 0.869 51 H 0.132 0.868 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.774 -15.220 0.214 16.280 hybrid contribution 0.505 0.737 -1.214 1.508 sum 6.279 -14.483 -1.000 15.817 Atomic orbital electron populations 1.22032 0.94537 1.00623 1.03764 1.22150 0.96632 0.88242 1.00351 1.61673 1.14209 1.15185 1.33211 1.22498 0.86571 1.03467 0.99833 1.20551 0.93006 0.94384 0.91783 0.91955 1.19852 0.87324 0.76883 0.83622 1.90677 1.69978 1.48640 1.29853 1.47644 1.10639 1.68904 1.06137 1.21790 0.97435 1.01126 0.86174 1.21335 0.79652 0.94210 1.02370 0.88289 1.22063 1.00108 0.98325 1.00874 1.20970 0.94486 0.87737 0.95192 1.42245 1.46141 1.08183 1.40331 1.19073 1.18064 0.88284 1.12095 0.91779 1.24673 0.99361 0.97669 0.98622 1.69683 1.26738 1.32627 1.27019 0.86418 0.76994 0.85175 0.78412 1.21553 1.21867 1.21613 1.19113 0.98767 0.95668 0.95045 1.20891 0.96147 0.92951 0.98707 1.20972 0.96847 0.96421 0.97693 1.21007 0.99342 0.98205 0.93452 1.20868 0.99812 0.94813 0.98335 1.20762 0.97814 0.98002 0.96032 0.93162 0.90675 0.92526 0.95394 0.90588 0.90120 0.91582 0.95770 0.91610 0.92254 0.91375 0.92484 0.92740 0.91485 0.96532 0.95823 0.77752 0.93820 0.85619 0.86596 0.86911 0.86807 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.56 37.16 0.32 -1.71 16 2 C 0.05 0.66 5.65 -3.82 -0.02 0.64 16 3 N -0.52 -7.50 4.11 -237.69 -0.98 -8.48 16 4 C 0.02 0.30 8.70 60.06 0.52 0.82 16 5 C 0.11 1.78 1.53 -70.02 -0.11 1.68 16 6 H 0.06 0.87 5.38 -51.93 -0.28 0.59 16 7 C 0.54 9.81 3.43 -10.99 -0.04 9.77 16 8 O -0.52 -11.21 14.17 5.56 0.08 -11.13 16 9 N -0.60 -10.17 2.19 -173.94 -0.38 -10.55 16 10 C 0.08 1.11 9.43 59.85 0.56 1.67 16 11 C 0.13 2.24 2.80 -67.93 -0.19 2.05 16 12 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 13 C -0.16 -2.04 9.17 37.15 0.34 -1.70 16 14 C 0.14 3.01 5.56 -4.04 -0.02 2.99 16 15 N -0.72 -18.92 5.43 -59.91 -0.33 -19.24 16 16 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 17 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.91 -27.35 13.06 55.49 0.72 -26.62 16 20 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C -0.09 -1.44 3.61 -104.62 -0.38 -1.82 16 25 C -0.07 -1.27 7.16 -39.58 -0.28 -1.55 16 26 C -0.10 -1.81 10.05 -39.58 -0.40 -2.20 16 27 C -0.10 -1.72 10.05 -39.58 -0.40 -2.12 16 28 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 29 C -0.11 -1.71 9.67 -39.58 -0.38 -2.09 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 32 H 0.06 0.84 5.10 -51.93 -0.26 0.58 16 33 H 0.03 0.31 7.95 -51.93 -0.41 -0.10 16 34 H 0.08 0.82 7.92 -51.93 -0.41 0.40 16 35 H 0.08 1.08 5.48 -51.93 -0.28 0.80 16 36 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.02 0.27 8.11 -51.93 -0.42 -0.15 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.70 5.79 -51.93 -0.30 0.40 16 40 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 41 H 0.06 0.68 6.66 -51.93 -0.35 0.33 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.02 0.34 7.84 -51.93 -0.41 -0.07 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.39 11.00 7.06 -40.82 -0.29 10.71 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.13 2.47 7.97 -52.49 -0.42 2.05 16 49 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 50 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 51 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 52 H 0.11 1.49 7.98 -52.49 -0.42 1.07 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -32.99 403.83 -9.61 -42.60 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -8.68 Total: 12.88 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.12 Total: -3.30 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.96 Total: -64.89 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.99 -9.61 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319559339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.794 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds