Wall clock time and date at job start Tue Mar 31 2020 18:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47096 * 2 1 4 4 C 1.46904 * 111.00022 * 288.76092 * 3 2 1 5 5 C 1.46899 * 111.00073 * 164.81528 * 3 2 1 6 6 H 1.08996 * 109.47530 * 56.49056 * 5 3 2 7 7 C 1.50710 * 109.46755 * 296.49326 * 5 3 2 8 8 O 1.21280 * 120.00015 * 337.52828 * 7 5 3 9 9 N 1.34776 * 119.99715 * 157.52787 * 7 5 3 10 10 C 1.46499 * 120.00317 * 0.02562 * 9 7 5 11 11 C 1.46502 * 119.99647 * 179.97438 * 9 7 5 12 12 H 1.09003 * 109.47156 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47446 * 240.00273 * 11 9 7 14 14 C 1.53000 * 109.46598 * 120.00096 * 11 9 7 15 15 N 1.46499 * 109.47887 * 305.00147 * 14 11 9 16 16 C 1.36934 * 120.00627 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99424 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46873 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46834 * 119.99965 * 20 18 16 23 23 H 1.48494 * 109.47116 * 240.00229 * 20 18 16 24 24 C 1.50700 * 109.47496 * 176.49639 * 5 3 2 25 25 C 1.38231 * 119.99939 * 47.52890 * 24 5 3 26 26 C 1.38238 * 119.99600 * 179.79196 * 25 24 5 27 27 C 1.38231 * 120.00390 * 0.44219 * 26 25 24 28 28 C 1.38237 * 119.99673 * 359.80893 * 27 26 25 29 29 C 1.38234 * 119.99838 * 227.80593 * 24 5 3 30 30 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47039 * 300.00544 * 1 2 3 32 32 H 1.09002 * 109.47188 * 59.99758 * 1 2 3 33 33 H 1.08995 * 109.47160 * 239.99478 * 2 1 3 34 34 H 1.09000 * 109.46632 * 119.99730 * 2 1 3 35 35 H 1.08999 * 109.47325 * 296.05264 * 4 3 2 36 36 H 1.09003 * 109.46728 * 56.04582 * 4 3 2 37 37 H 1.08991 * 109.47369 * 176.04921 * 4 3 2 38 38 H 1.08996 * 109.47168 * 89.99498 * 10 9 7 39 39 H 1.08995 * 109.46940 * 209.99851 * 10 9 7 40 40 H 1.08999 * 109.46954 * 329.99571 * 10 9 7 41 41 H 1.09003 * 109.46938 * 180.02562 * 13 11 9 42 42 H 1.08999 * 109.47169 * 299.99885 * 13 11 9 43 43 H 1.09000 * 109.46806 * 60.00624 * 13 11 9 44 44 H 1.09001 * 109.47320 * 65.00305 * 14 11 9 45 45 H 1.09006 * 109.46950 * 184.99807 * 14 11 9 46 46 H 0.97010 * 119.99256 * 0.02562 * 15 14 11 47 47 H 0.97001 * 119.99693 * 180.02562 * 19 18 16 48 48 H 1.07998 * 120.00533 * 0.02562 * 25 24 5 49 49 H 1.08004 * 119.99498 * 180.27589 * 26 25 24 50 50 H 1.07996 * 120.00512 * 179.83363 * 27 26 25 51 51 H 1.08003 * 120.00096 * 179.97438 * 28 27 26 52 52 H 1.08004 * 119.99969 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7793 2.0283 -1.2986 5 6 3.4430 1.4401 0.3592 6 1 4.0152 0.8142 -0.3256 7 6 3.6251 0.9390 1.7689 8 8 2.6928 0.9580 2.5443 9 7 4.8239 0.4699 2.1677 10 6 5.9503 0.4475 1.2311 11 6 5.0010 -0.0167 3.5381 12 1 4.0610 0.0782 4.0817 13 6 6.0810 0.8109 4.2377 14 6 5.4252 -1.4864 3.5065 15 7 4.4502 -2.2598 2.7335 16 6 4.6226 -3.6080 2.5671 17 1 5.4772 -4.1013 3.0061 18 6 3.6985 -4.3407 1.8351 19 7 2.6568 -3.7395 1.3005 20 14 3.9333 -6.1800 1.6086 21 1 5.1730 -6.6100 2.3037 22 1 2.7690 -6.9019 2.1821 23 1 4.0440 -6.4903 0.1607 24 6 3.9301 2.8631 0.2652 25 6 3.1968 3.8841 0.8401 26 6 3.6459 5.1889 0.7575 27 6 4.8236 5.4738 0.0921 28 6 5.5543 4.4533 -0.4873 29 6 5.1074 3.1480 -0.4010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3545 1.5162 -2.0699 36 1 0.7179 1.9733 -1.5403 37 1 2.0871 3.0727 -1.2492 38 1 6.4990 1.3867 1.3002 39 1 6.6139 -0.3803 1.4807 40 1 5.5758 0.3194 0.2155 41 1 6.2131 0.4485 5.2572 42 1 7.0210 0.7156 3.6940 43 1 5.7787 1.8579 4.2602 44 1 6.4073 -1.5713 3.0413 45 1 5.4709 -1.8733 4.5246 46 1 3.6829 -1.8165 2.3389 47 1 2.0108 -4.2516 0.7893 48 1 2.2749 3.6621 1.3570 49 1 3.0751 5.9861 1.2105 50 1 5.1730 6.4934 0.0253 51 1 6.4742 4.6759 -1.0075 52 1 5.6783 2.3508 -0.8536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319559342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:22 Heat of formation + Delta-G solvation = 22.909825 kcal Electronic energy + Delta-G solvation = -31108.649662 eV Core-core repulsion = 27302.167040 eV Total energy + Delta-G solvation = -3806.482622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.49631 -38.82382 -37.18737 -35.90856 -34.01762 -32.67607 -31.55172 -30.92587 -30.03656 -29.57028 -27.65945 -26.57317 -25.60445 -24.60133 -22.75223 -22.63345 -21.92811 -21.13936 -20.03653 -18.54084 -17.22982 -17.08086 -16.79285 -16.06504 -15.59780 -15.41928 -14.85072 -14.68359 -14.45904 -14.19856 -14.03930 -13.55199 -13.41174 -13.25463 -13.12061 -12.89178 -12.83806 -12.67812 -12.29825 -12.25750 -12.15831 -12.07705 -11.81197 -11.76659 -11.50077 -11.42423 -11.27724 -11.02981 -10.85940 -10.79717 -10.74393 -10.42388 -10.33043 -10.00481 -9.69319 -9.48678 -8.93918 -8.86920 -8.62170 -8.17171 -8.07484 -6.88297 -5.73098 -3.01546 1.24753 1.38105 3.06809 3.27601 3.43176 3.49126 3.51109 3.71252 4.18949 4.60167 4.70407 4.82625 4.90250 4.94994 5.11354 5.20101 5.31496 5.38393 5.43798 5.46401 5.48655 5.54821 5.58059 5.60698 5.65499 5.69782 5.75775 5.84538 5.88605 5.95386 5.98308 6.03636 6.04558 6.09784 6.14226 6.22369 6.28476 6.39477 6.41461 6.48452 6.50985 6.54860 6.66003 6.68625 6.75506 6.94541 7.04323 7.22156 7.31555 7.71635 7.82926 8.44795 8.67455 9.56562 10.15052 10.51101 11.48986 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004261 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.946422 B = 6570.411467 C = 7821.924513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 N -0.516 5.516 4 C 0.023 3.977 5 C 0.109 3.891 6 H 0.068 0.932 7 C 0.530 3.470 8 O -0.516 6.516 9 N -0.595 5.595 10 C 0.081 3.919 11 C 0.127 3.873 12 H 0.100 0.900 13 C -0.153 4.153 14 C 0.143 3.857 15 N -0.727 5.727 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.926 5.926 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.072 4.072 25 C -0.083 4.083 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.111 4.111 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.094 0.906 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.028 0.972 46 H 0.386 0.614 47 H 0.253 0.747 48 H 0.133 0.867 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.121 0.879 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 18.181 -4.642 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.125 4.125 5 C -0.003 4.003 6 H 0.086 0.914 7 C 0.316 3.684 8 O -0.391 6.391 9 N -0.329 5.329 10 C -0.063 4.063 11 C 0.024 3.976 12 H 0.118 0.882 13 C -0.212 4.212 14 C 0.015 3.985 15 N -0.372 5.372 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.575 5.575 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.073 4.073 25 C -0.102 4.102 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.130 4.130 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.220 0.780 47 H 0.063 0.937 48 H 0.151 0.849 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.139 0.861 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.304 18.254 -3.846 19.144 hybrid contribution 0.474 -1.506 -1.057 1.900 sum 4.778 16.748 -4.903 18.093 Atomic orbital electron populations 1.21650 0.94836 1.01542 1.01306 1.22144 0.96334 0.86626 1.02413 1.61796 1.13496 1.19209 1.29583 1.22451 1.01645 0.99407 0.88983 1.20507 0.90993 0.93504 0.95300 0.91422 1.19994 0.82322 0.77257 0.88824 1.90685 1.39458 1.54553 1.54382 1.47624 1.10324 1.62397 1.12514 1.21782 0.89869 1.01487 0.93127 1.21362 1.00378 0.93956 0.81940 0.88242 1.22040 0.98714 0.99845 1.00608 1.21005 0.93352 0.88626 0.95540 1.42297 1.27204 1.05471 1.62200 1.19244 1.06460 0.84367 1.26994 0.91327 1.24704 0.97370 0.97763 1.00917 1.69679 1.13661 1.34502 1.39649 0.86171 0.77184 0.85875 0.77264 1.20684 1.21920 1.22026 1.19424 0.95326 0.93546 0.98976 1.21161 0.99782 0.91797 0.97437 1.21174 0.96724 0.96631 0.99821 1.21143 0.95425 0.99013 0.98266 1.21039 0.99966 0.92666 1.00507 1.21072 0.95857 0.96933 0.99120 0.92084 0.92029 0.93748 0.94954 0.88732 0.95912 0.90988 0.91373 0.93217 0.90414 0.91696 0.91519 0.92496 0.92695 0.96241 0.95454 0.78020 0.93703 0.84864 0.86156 0.86378 0.86146 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.95 37.16 0.37 -1.82 16 2 C 0.05 0.94 5.37 -3.82 -0.02 0.92 16 3 N -0.52 -8.22 3.86 -237.69 -0.92 -9.14 16 4 C 0.02 0.30 8.94 60.07 0.54 0.84 16 5 C 0.11 1.70 1.38 -70.01 -0.10 1.60 16 6 H 0.07 1.06 5.97 -51.93 -0.31 0.75 16 7 C 0.53 9.78 5.40 -10.98 -0.06 9.72 16 8 O -0.52 -11.30 14.97 5.56 0.08 -11.22 16 9 N -0.59 -10.11 2.24 -173.93 -0.39 -10.50 16 10 C 0.08 1.13 8.42 59.85 0.50 1.63 16 11 C 0.13 2.22 2.80 -67.93 -0.19 2.03 16 12 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 13 C -0.15 -2.06 9.19 37.16 0.34 -1.72 16 14 C 0.14 2.91 5.50 -4.04 -0.02 2.88 16 15 N -0.73 -18.61 5.43 -59.91 -0.33 -18.94 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 20 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C -0.07 -0.95 3.38 -104.63 -0.35 -1.30 16 25 C -0.08 -1.09 8.21 -39.58 -0.32 -1.42 16 26 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 29 C -0.11 -1.24 8.77 -39.58 -0.35 -1.59 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.61 6.66 -51.93 -0.35 0.26 16 33 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.09 2.14 6.30 -51.93 -0.33 1.82 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.87 6.53 -51.93 -0.34 0.53 16 37 H 0.07 0.84 6.16 -51.93 -0.32 0.52 16 38 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16 39 H 0.08 1.13 6.53 -51.93 -0.34 0.79 16 40 H 0.06 0.88 5.54 -51.93 -0.29 0.59 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.39 10.64 7.06 -40.82 -0.29 10.35 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.13 1.95 7.95 -52.49 -0.42 1.53 16 49 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 52 H 0.12 1.19 7.43 -52.48 -0.39 0.80 16 LS Contribution 406.04 15.07 6.12 6.12 Total: -1.00 -32.21 406.04 -9.49 -41.70 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -8.66 Total: 11.93 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.10 Total: -0.41 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.91 Total: -65.55 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.21 -9.49 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319559342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.606 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds