Wall clock time and date at job start Tue Mar 31 2020 18:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47096 * 2 1 4 4 C 1.46904 * 111.00022 * 288.76092 * 3 2 1 5 5 C 1.46899 * 111.00073 * 164.81528 * 3 2 1 6 6 H 1.08996 * 109.47530 * 56.49056 * 5 3 2 7 7 C 1.50710 * 109.46755 * 296.49326 * 5 3 2 8 8 O 1.21280 * 120.00015 * 337.52828 * 7 5 3 9 9 N 1.34776 * 119.99715 * 157.52787 * 7 5 3 10 10 C 1.46499 * 120.00317 * 0.02562 * 9 7 5 11 11 C 1.46502 * 119.99647 * 179.97438 * 9 7 5 12 12 H 1.09003 * 109.47156 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47446 * 240.00273 * 11 9 7 14 14 C 1.53000 * 109.46598 * 120.00096 * 11 9 7 15 15 N 1.46499 * 109.47887 * 305.00147 * 14 11 9 16 16 C 1.36934 * 120.00627 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99424 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00100 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46873 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46834 * 119.99965 * 20 18 16 23 23 H 1.48494 * 109.47116 * 240.00229 * 20 18 16 24 24 C 1.50700 * 109.47496 * 176.49639 * 5 3 2 25 25 C 1.38231 * 119.99939 * 47.52890 * 24 5 3 26 26 C 1.38238 * 119.99600 * 179.79196 * 25 24 5 27 27 C 1.38231 * 120.00390 * 0.44219 * 26 25 24 28 28 C 1.38237 * 119.99673 * 359.80893 * 27 26 25 29 29 C 1.38234 * 119.99838 * 227.80593 * 24 5 3 30 30 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47039 * 300.00544 * 1 2 3 32 32 H 1.09002 * 109.47188 * 59.99758 * 1 2 3 33 33 H 1.08995 * 109.47160 * 239.99478 * 2 1 3 34 34 H 1.09000 * 109.46632 * 119.99730 * 2 1 3 35 35 H 1.08999 * 109.47325 * 296.05264 * 4 3 2 36 36 H 1.09003 * 109.46728 * 56.04582 * 4 3 2 37 37 H 1.08991 * 109.47369 * 176.04921 * 4 3 2 38 38 H 1.08996 * 109.47168 * 89.99498 * 10 9 7 39 39 H 1.08995 * 109.46940 * 209.99851 * 10 9 7 40 40 H 1.08999 * 109.46954 * 329.99571 * 10 9 7 41 41 H 1.09003 * 109.46938 * 180.02562 * 13 11 9 42 42 H 1.08999 * 109.47169 * 299.99885 * 13 11 9 43 43 H 1.09000 * 109.46806 * 60.00624 * 13 11 9 44 44 H 1.09001 * 109.47320 * 65.00305 * 14 11 9 45 45 H 1.09006 * 109.46950 * 184.99807 * 14 11 9 46 46 H 0.97010 * 119.99256 * 0.02562 * 15 14 11 47 47 H 0.97001 * 119.99693 * 180.02562 * 19 18 16 48 48 H 1.07998 * 120.00533 * 0.02562 * 25 24 5 49 49 H 1.08004 * 119.99498 * 180.27589 * 26 25 24 50 50 H 1.07996 * 120.00512 * 179.83363 * 27 26 25 51 51 H 1.08003 * 120.00096 * 179.97438 * 28 27 26 52 52 H 1.08004 * 119.99969 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7793 2.0283 -1.2986 5 6 3.4430 1.4401 0.3592 6 1 4.0152 0.8142 -0.3256 7 6 3.6251 0.9390 1.7689 8 8 2.6928 0.9580 2.5443 9 7 4.8239 0.4699 2.1677 10 6 5.9503 0.4475 1.2311 11 6 5.0010 -0.0167 3.5381 12 1 4.0610 0.0782 4.0817 13 6 6.0810 0.8109 4.2377 14 6 5.4252 -1.4864 3.5065 15 7 4.4502 -2.2598 2.7335 16 6 4.6226 -3.6080 2.5671 17 1 5.4772 -4.1013 3.0061 18 6 3.6985 -4.3407 1.8351 19 7 2.6568 -3.7395 1.3005 20 14 3.9333 -6.1800 1.6086 21 1 5.1730 -6.6100 2.3037 22 1 2.7690 -6.9019 2.1821 23 1 4.0440 -6.4903 0.1607 24 6 3.9301 2.8631 0.2652 25 6 3.1968 3.8841 0.8401 26 6 3.6459 5.1889 0.7575 27 6 4.8236 5.4738 0.0921 28 6 5.5543 4.4533 -0.4873 29 6 5.1074 3.1480 -0.4010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3545 1.5162 -2.0699 36 1 0.7179 1.9733 -1.5403 37 1 2.0871 3.0727 -1.2492 38 1 6.4990 1.3867 1.3002 39 1 6.6139 -0.3803 1.4807 40 1 5.5758 0.3194 0.2155 41 1 6.2131 0.4485 5.2572 42 1 7.0210 0.7156 3.6940 43 1 5.7787 1.8579 4.2602 44 1 6.4073 -1.5713 3.0413 45 1 5.4709 -1.8733 4.5246 46 1 3.6829 -1.8165 2.3389 47 1 2.0108 -4.2516 0.7893 48 1 2.2749 3.6621 1.3570 49 1 3.0751 5.9861 1.2105 50 1 5.1730 6.4934 0.0253 51 1 6.4742 4.6759 -1.0075 52 1 5.6783 2.3508 -0.8536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319559342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:21 Heat of formation + Delta-G solvation = 3.042846 kcal Electronic energy + Delta-G solvation = -31109.511158 eV Core-core repulsion = 27302.167040 eV Total energy + Delta-G solvation = -3807.344119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73359 -39.90920 -38.45024 -37.41451 -35.84234 -34.04446 -33.04067 -31.87519 -31.65885 -30.73518 -28.78604 -27.79533 -27.38521 -25.81085 -24.53821 -23.50553 -23.22994 -22.36019 -21.37087 -19.92218 -19.09792 -18.49614 -17.82220 -17.42344 -16.78287 -16.63073 -16.60739 -15.95867 -15.74774 -15.47122 -15.24274 -15.17138 -14.99874 -14.41784 -14.28085 -14.09633 -14.01135 -13.91121 -13.72278 -13.53699 -13.41145 -13.26097 -13.17806 -12.99685 -12.91397 -12.82592 -12.72245 -12.51893 -12.49540 -12.10783 -11.91573 -11.83117 -11.81590 -11.75639 -11.71104 -10.99014 -10.80230 -9.77847 -9.59516 -9.53811 -9.33804 -8.98416 -7.91603 -5.21591 0.38229 0.54560 1.44595 1.46122 1.55605 1.68387 1.99461 2.54899 2.76630 3.02941 3.40503 3.58432 3.65374 3.85003 3.90703 4.07343 4.11270 4.16813 4.22856 4.24541 4.29850 4.32763 4.36394 4.46124 4.51220 4.60300 4.62403 4.66531 4.67081 4.72891 4.77957 4.83037 4.86480 4.91108 4.97189 4.99913 5.06599 5.13362 5.13596 5.21427 5.28561 5.29985 5.48794 5.58347 5.65851 5.66389 5.68108 5.92822 6.07292 6.13362 6.27236 6.48706 7.28201 7.34269 8.09358 8.33922 9.30557 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004261 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.946422 B = 6570.411467 C = 7821.924513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.062 3.938 3 N -0.524 5.524 4 C 0.027 3.973 5 C 0.116 3.884 6 H 0.065 0.935 7 C 0.522 3.478 8 O -0.565 6.565 9 N -0.596 5.596 10 C 0.079 3.921 11 C 0.131 3.869 12 H 0.064 0.936 13 C -0.140 4.140 14 C 0.142 3.858 15 N -0.741 5.741 16 C -0.245 4.245 17 H 0.076 0.924 18 C -0.071 4.071 19 N -0.960 5.960 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.298 1.298 23 H -0.293 1.293 24 C -0.085 4.085 25 C -0.102 4.102 26 C -0.127 4.127 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.114 4.114 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.029 0.971 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.105 0.895 49 H 0.136 0.864 50 H 0.149 0.851 51 H 0.151 0.849 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 20.090 -5.808 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.066 4.066 3 N -0.249 5.249 4 C -0.120 4.120 5 C 0.005 3.995 6 H 0.083 0.917 7 C 0.310 3.690 8 O -0.443 6.443 9 N -0.329 5.329 10 C -0.063 4.063 11 C 0.027 3.973 12 H 0.083 0.917 13 C -0.198 4.198 14 C 0.015 3.985 15 N -0.384 5.384 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.263 4.263 19 N -0.610 5.610 20 Si 0.800 3.200 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.220 1.220 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.145 4.145 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.132 4.132 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.124 0.876 49 H 0.154 0.846 50 H 0.166 0.834 51 H 0.169 0.831 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.064 20.176 -5.002 21.954 hybrid contribution -0.308 -2.027 -0.654 2.152 sum 6.757 18.149 -5.655 20.175 Atomic orbital electron populations 1.21572 0.93420 1.01268 1.02222 1.21889 0.97519 0.87754 0.99397 1.61763 1.14169 1.17481 1.31464 1.22487 1.02427 0.99625 0.87455 1.20435 0.90708 0.95317 0.93043 0.91739 1.20597 0.82019 0.76677 0.89739 1.90645 1.41014 1.56689 1.55925 1.47751 1.10854 1.61486 1.12795 1.21964 0.88881 1.03022 0.92460 1.21240 1.00190 0.93193 0.82661 0.91749 1.21938 0.97723 0.99106 1.01043 1.21190 0.92780 0.89767 0.94743 1.42509 1.27818 1.05301 1.62754 1.19632 1.06318 0.85572 1.26196 0.90609 1.25519 0.97404 1.02056 1.01357 1.69867 1.14563 1.35875 1.40680 0.85121 0.77259 0.80655 0.76969 1.19025 1.22530 1.22006 1.19251 0.96690 0.91679 1.00934 1.21026 0.99389 0.93160 0.98474 1.21375 0.97489 0.95840 0.99829 1.21521 0.94368 1.00595 0.96680 1.21406 1.00714 0.91729 0.99648 1.21240 0.94977 0.98311 0.98683 0.92962 0.93061 0.90704 0.95694 0.93925 0.95379 0.89972 0.90285 0.89931 0.90762 0.91576 0.90138 0.90434 0.92234 0.94492 0.95344 0.79671 0.94312 0.87632 0.84595 0.83352 0.83109 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.95 71.98 0.72 -3.61 16 2 C 0.06 2.43 5.37 86.31 0.46 2.89 16 3 N -0.52 -17.46 3.86 -905.92 -3.50 -20.96 16 4 C 0.03 0.70 8.94 127.69 1.14 1.84 16 5 C 0.12 3.76 1.38 43.43 0.06 3.82 16 6 H 0.07 2.08 5.97 -2.39 -0.01 2.06 16 7 C 0.52 20.32 5.40 87.66 0.47 20.80 16 8 O -0.56 -26.80 14.97 -3.03 -0.05 -26.85 16 9 N -0.60 -20.65 2.24 -822.59 -1.85 -22.50 16 10 C 0.08 2.12 8.42 127.77 1.08 3.19 16 11 C 0.13 4.67 2.80 44.99 0.13 4.79 16 12 H 0.06 2.76 6.90 -2.39 -0.02 2.74 16 13 C -0.14 -3.52 9.19 71.98 0.66 -2.86 16 14 C 0.14 5.81 5.50 86.38 0.48 6.28 16 15 N -0.74 -39.15 5.43 -343.45 -1.87 -41.01 16 16 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.96 -59.69 13.06 21.65 0.28 -59.40 16 20 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 C -0.08 -2.18 3.38 -19.87 -0.07 -2.25 16 25 C -0.10 -2.64 8.21 22.27 0.18 -2.46 16 26 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 27 C -0.11 -1.75 10.05 22.27 0.22 -1.52 16 28 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 29 C -0.11 -2.24 8.77 22.27 0.20 -2.04 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 2.05 6.66 -2.39 -0.02 2.03 16 33 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.04 2.12 6.30 -2.39 -0.02 2.10 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 1.91 6.53 -2.39 -0.02 1.90 16 37 H 0.08 1.87 6.16 -2.39 -0.01 1.86 16 38 H 0.08 1.68 7.84 -2.39 -0.02 1.66 16 39 H 0.07 2.04 6.53 -2.39 -0.02 2.03 16 40 H 0.07 1.76 5.54 -2.39 -0.01 1.74 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.65 7.67 -2.39 -0.02 1.63 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.40 6.88 -2.39 -0.02 1.39 16 45 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.37 21.67 7.06 -92.70 -0.65 21.02 16 47 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 48 H 0.11 3.28 7.95 -2.91 -0.02 3.26 16 49 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 50 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 52 H 0.13 2.24 7.43 -2.91 -0.02 2.22 16 Total: -1.00 -74.34 406.04 2.79 -71.56 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.25 Total: 41.98 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 7.48 Total: 8.29 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -6.93 Total: -143.87 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.34 2.79 -71.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319559342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.599 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds