Wall clock time and date at job start Tue Mar 31 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.46503 * 120.00021 * 269.99445 * 3 2 1 5 5 C 1.53001 * 109.47395 * 270.00408 * 4 3 2 6 6 C 1.39041 * 120.00261 * 90.00213 * 3 2 1 7 7 C 1.39223 * 119.93453 * 180.02562 * 6 3 2 8 8 C 1.37608 * 120.07095 * 180.02562 * 7 6 3 9 9 C 1.39795 * 119.92984 * 0.25369 * 8 7 6 10 10 C 1.47522 * 120.06831 * 179.72818 * 9 8 7 11 11 O 1.21590 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46706 * 35.00680 * 13 12 10 15 15 C 1.52993 * 109.47414 * 275.00607 * 13 12 10 16 16 C 1.53003 * 109.47065 * 155.00055 * 13 12 10 17 17 C 1.52998 * 109.47174 * 295.00712 * 16 13 12 18 18 N 1.46508 * 109.46816 * 179.97438 * 17 16 13 19 19 C 1.36934 * 119.99946 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99869 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00232 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99704 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46929 * 60.00476 * 23 21 19 25 25 H 1.48500 * 109.46690 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47470 * 299.99914 * 23 21 19 27 27 C 1.39803 * 119.86119 * 359.51083 * 9 8 7 28 28 C 1.37604 * 119.92747 * 0.46708 * 27 9 8 29 29 H 1.09004 * 109.46743 * 60.00258 * 1 2 3 30 30 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47066 * 300.00172 * 1 2 3 32 32 H 1.08999 * 109.47751 * 240.00125 * 2 1 3 33 33 H 1.08997 * 109.47578 * 119.99716 * 2 1 3 34 34 H 1.09005 * 109.47183 * 30.00382 * 4 3 2 35 35 H 1.08997 * 109.47115 * 149.99850 * 4 3 2 36 36 H 1.08993 * 109.46778 * 299.99709 * 5 4 3 37 37 H 1.09001 * 109.46753 * 59.99819 * 5 4 3 38 38 H 1.09003 * 109.46980 * 179.97438 * 5 4 3 39 39 H 1.07999 * 119.96314 * 0.03738 * 7 6 3 40 40 H 1.08002 * 120.03162 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00131 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47243 * 299.99743 * 15 13 12 43 43 H 1.09000 * 109.47640 * 60.00290 * 15 13 12 44 44 H 1.09003 * 109.46962 * 179.97438 * 15 13 12 45 45 H 1.09006 * 109.46525 * 55.00264 * 16 13 12 46 46 H 1.09000 * 109.47123 * 175.00189 * 16 13 12 47 47 H 1.08998 * 109.47284 * 299.99214 * 17 16 13 48 48 H 1.09000 * 109.47523 * 59.99722 * 17 16 13 49 49 H 0.96997 * 119.99711 * 359.97438 * 18 17 16 50 50 H 0.96994 * 119.99453 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.03308 * 180.23399 * 27 9 8 52 52 H 1.08007 * 119.95904 * 179.76477 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7136 3.3495 1.2024 8 6 2.9444 4.0008 2.3925 9 6 2.7181 3.3410 3.6040 10 6 2.9703 4.0342 4.8815 11 8 3.3759 5.1804 4.8815 12 7 2.7510 3.3969 6.0487 13 6 3.0020 4.0852 7.3174 14 1 2.7499 5.1406 7.2142 15 6 4.4799 3.9478 7.6885 16 6 2.1399 3.4600 8.4160 17 6 0.6619 3.7068 8.1069 18 7 -0.1635 3.1076 9.1586 19 6 -1.5281 3.2023 9.0954 20 1 -1.9958 3.7191 8.2704 21 6 -2.3102 2.6341 10.0915 22 7 -1.7401 2.0047 11.0971 23 14 -4.1717 2.7641 10.0055 24 1 -4.6558 2.1198 8.7581 25 1 -4.7703 2.0800 11.1798 26 1 -4.5689 4.1949 10.0100 27 6 2.2479 2.0244 3.6023 28 6 2.0186 1.3788 2.4089 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8407 38 1 3.8891 2.3449 -2.6546 39 1 2.8920 3.8574 0.2662 40 1 3.3044 5.0190 2.3905 41 1 2.4278 2.4824 6.0487 42 1 4.7320 2.8924 7.7917 43 1 5.0940 4.3933 6.9059 44 1 4.6666 4.4603 8.6323 45 1 2.3279 2.3871 8.4589 46 1 2.3908 3.9115 9.3758 47 1 0.4739 4.7795 8.0640 48 1 0.4111 3.2552 7.1471 49 1 0.2567 2.6437 9.8997 50 1 -2.2867 1.6074 11.7930 51 1 2.0685 1.5133 4.5367 52 1 1.6589 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320617239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:05 Heat of formation + Delta-G solvation = -4.542263 kcal Electronic energy + Delta-G solvation = -28278.829684 eV Core-core repulsion = 24471.156650 eV Total energy + Delta-G solvation = -3807.673034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36914 -39.30310 -36.98453 -36.21404 -34.29396 -32.96513 -32.19796 -31.27145 -30.83518 -30.22701 -28.19558 -27.79870 -24.45431 -24.34097 -23.76990 -22.23405 -21.83814 -21.23675 -20.52854 -19.93152 -18.29430 -17.20976 -16.90070 -16.49937 -15.96254 -15.28172 -15.01215 -14.79073 -14.50564 -14.42516 -14.25978 -13.98794 -13.66638 -13.64840 -13.45431 -13.35489 -13.21937 -13.01207 -12.78270 -12.63509 -12.58344 -12.22831 -12.19178 -12.13673 -11.76615 -11.56699 -11.40651 -11.15347 -10.97788 -10.88084 -10.73117 -10.58444 -10.51228 -10.08898 -10.03620 -9.70142 -9.65032 -9.12904 -8.89984 -8.79953 -7.56602 -6.89047 -5.73839 -3.02217 1.01268 1.32677 2.69419 3.01917 3.39365 3.46192 3.50170 3.51580 3.93880 4.39554 4.44480 4.60415 4.67970 4.73321 4.79460 4.88838 4.93615 4.96241 5.01738 5.07417 5.13083 5.22472 5.27787 5.34417 5.40860 5.43114 5.44872 5.46433 5.53986 5.59068 5.74145 5.78832 5.83546 5.84685 5.89543 6.00689 6.03228 6.10394 6.19435 6.29598 6.35006 6.40404 6.41851 6.58224 6.69810 6.87977 6.92463 6.94010 7.18371 7.72522 7.74186 8.44951 8.45514 9.56311 10.14535 10.49484 11.49119 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.002534 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.191484 B =11049.209911 C =13101.237384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.622 5.622 4 C 0.115 3.885 5 C -0.173 4.173 6 C 0.241 3.759 7 C -0.211 4.211 8 C -0.010 4.010 9 C -0.195 4.195 10 C 0.564 3.436 11 O -0.552 6.552 12 N -0.717 5.717 13 C 0.146 3.854 14 H 0.088 0.912 15 C -0.160 4.160 16 C -0.135 4.135 17 C 0.154 3.846 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.032 4.032 28 C -0.207 4.207 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.399 0.601 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.126 0.874 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -4.024 -25.929 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 N -0.331 5.331 4 C -0.008 4.008 5 C -0.231 4.231 6 C 0.138 3.862 7 C -0.233 4.233 8 C -0.030 4.030 9 C -0.200 4.200 10 C 0.353 3.647 11 O -0.431 6.431 12 N -0.369 5.369 13 C 0.041 3.959 14 H 0.106 0.894 15 C -0.219 4.219 16 C -0.173 4.173 17 C 0.026 3.974 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.052 4.052 28 C -0.229 4.229 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.234 0.766 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.144 0.856 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.109 -3.269 -26.129 29.415 hybrid contribution -1.187 -0.666 0.242 1.382 sum 11.922 -3.935 -25.887 28.771 Atomic orbital electron populations 1.22237 0.96040 1.02226 1.02769 1.21448 0.94245 0.82215 1.02808 1.46611 1.70197 1.13278 1.03000 1.21439 0.96409 0.97962 0.84951 1.22230 0.97213 1.02147 1.01551 1.17995 0.91190 0.91252 0.85797 1.20608 1.10136 0.94062 0.98531 1.20972 0.92475 0.99181 0.90331 1.19691 1.11129 0.95696 0.93503 1.18159 0.76998 0.85825 0.83724 1.90734 1.46920 1.17672 1.87769 1.46028 1.67739 1.17581 1.05536 1.20958 0.94476 0.98029 0.82450 0.89357 1.22158 0.96124 1.01880 1.01702 1.22065 0.96141 1.01173 0.97920 1.20639 0.88176 0.96168 0.92402 1.42365 1.03056 1.66504 1.25887 1.19195 0.82727 1.29102 1.05874 0.91313 1.24739 0.97968 1.01059 0.97346 1.69651 1.34225 1.41636 1.12872 0.86262 0.85594 0.77536 0.76781 1.21301 1.21687 1.21265 1.21083 0.93205 0.93090 0.97812 1.20591 1.10481 1.01093 0.90761 0.92570 0.91619 0.91890 0.90845 0.90344 0.90798 0.90383 0.92059 0.92554 0.91718 0.85622 0.84931 0.76559 0.92603 0.92398 0.91615 0.91444 0.90274 0.96397 0.96325 0.78339 0.93511 0.85615 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.24 37.16 0.38 -0.68 16 2 C 0.12 0.69 5.87 -4.04 -0.02 0.66 16 3 N -0.62 -4.59 2.59 -171.76 -0.44 -5.03 16 4 C 0.12 0.65 5.87 -4.04 -0.02 0.63 16 5 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 6 C 0.24 2.32 6.55 -83.86 -0.55 1.77 16 7 C -0.21 -2.12 9.18 -39.45 -0.36 -2.48 16 8 C -0.01 -0.12 9.58 -39.23 -0.38 -0.50 16 9 C -0.20 -2.54 5.88 -104.95 -0.62 -3.16 16 10 C 0.56 8.59 7.73 -12.48 -0.10 8.50 16 11 O -0.55 -10.07 16.00 5.29 0.08 -9.99 16 12 N -0.72 -9.94 4.48 -54.85 -0.25 -10.18 16 13 C 0.15 2.11 2.57 -67.93 -0.17 1.93 16 14 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.16 -2.01 9.48 37.15 0.35 -1.66 16 16 C -0.13 -2.16 4.87 -26.73 -0.13 -2.29 16 17 C 0.15 3.17 6.15 -4.04 -0.02 3.15 16 18 N -0.73 -18.96 5.60 -59.90 -0.34 -19.29 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 23 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C -0.03 -0.36 9.53 -39.23 -0.37 -0.73 16 28 C -0.21 -2.07 9.18 -39.45 -0.36 -2.43 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.08 0.46 6.17 -51.93 -0.32 0.14 16 34 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 35 H 0.08 0.44 6.17 -51.93 -0.32 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.13 1.01 6.11 -52.49 -0.32 0.69 16 40 H 0.13 1.59 7.64 -52.49 -0.40 1.19 16 41 H 0.40 4.87 6.62 -40.82 -0.27 4.60 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 49 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.13 1.22 6.39 -52.49 -0.34 0.89 16 52 H 0.13 1.06 6.11 -52.48 -0.32 0.74 16 LS Contribution 419.19 15.07 6.32 6.32 Total: -1.00 -33.98 419.19 -10.03 -44.01 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.86 Total: 9.58 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.25 Total: -5.30 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.30 Total: -62.35 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.98 -10.03 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320617239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.466 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds