Wall clock time and date at job start Tue Mar 31 2020 18:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.46503 * 120.00021 * 269.99445 * 3 2 1 5 5 C 1.53001 * 109.47395 * 270.00408 * 4 3 2 6 6 C 1.39041 * 120.00261 * 90.00213 * 3 2 1 7 7 C 1.39223 * 119.93453 * 180.02562 * 6 3 2 8 8 C 1.37608 * 120.07095 * 180.02562 * 7 6 3 9 9 C 1.39795 * 119.92984 * 0.25369 * 8 7 6 10 10 C 1.47522 * 120.06831 * 179.72818 * 9 8 7 11 11 O 1.21590 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46706 * 35.00680 * 13 12 10 15 15 C 1.52993 * 109.47414 * 275.00607 * 13 12 10 16 16 C 1.53003 * 109.47065 * 155.00055 * 13 12 10 17 17 C 1.52998 * 109.47174 * 295.00712 * 16 13 12 18 18 N 1.46508 * 109.46816 * 179.97438 * 17 16 13 19 19 C 1.36934 * 119.99946 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99869 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00232 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99704 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46929 * 60.00476 * 23 21 19 25 25 H 1.48500 * 109.46690 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47470 * 299.99914 * 23 21 19 27 27 C 1.39803 * 119.86119 * 359.51083 * 9 8 7 28 28 C 1.37604 * 119.92747 * 0.46708 * 27 9 8 29 29 H 1.09004 * 109.46743 * 60.00258 * 1 2 3 30 30 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47066 * 300.00172 * 1 2 3 32 32 H 1.08999 * 109.47751 * 240.00125 * 2 1 3 33 33 H 1.08997 * 109.47578 * 119.99716 * 2 1 3 34 34 H 1.09005 * 109.47183 * 30.00382 * 4 3 2 35 35 H 1.08997 * 109.47115 * 149.99850 * 4 3 2 36 36 H 1.08993 * 109.46778 * 299.99709 * 5 4 3 37 37 H 1.09001 * 109.46753 * 59.99819 * 5 4 3 38 38 H 1.09003 * 109.46980 * 179.97438 * 5 4 3 39 39 H 1.07999 * 119.96314 * 0.03738 * 7 6 3 40 40 H 1.08002 * 120.03162 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00131 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47243 * 299.99743 * 15 13 12 43 43 H 1.09000 * 109.47640 * 60.00290 * 15 13 12 44 44 H 1.09003 * 109.46962 * 179.97438 * 15 13 12 45 45 H 1.09006 * 109.46525 * 55.00264 * 16 13 12 46 46 H 1.09000 * 109.47123 * 175.00189 * 16 13 12 47 47 H 1.08998 * 109.47284 * 299.99214 * 17 16 13 48 48 H 1.09000 * 109.47523 * 59.99722 * 17 16 13 49 49 H 0.96997 * 119.99711 * 359.97438 * 18 17 16 50 50 H 0.96994 * 119.99453 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.03308 * 180.23399 * 27 9 8 52 52 H 1.08007 * 119.95904 * 179.76477 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7136 3.3495 1.2024 8 6 2.9444 4.0008 2.3925 9 6 2.7181 3.3410 3.6040 10 6 2.9703 4.0342 4.8815 11 8 3.3759 5.1804 4.8815 12 7 2.7510 3.3969 6.0487 13 6 3.0020 4.0852 7.3174 14 1 2.7499 5.1406 7.2142 15 6 4.4799 3.9478 7.6885 16 6 2.1399 3.4600 8.4160 17 6 0.6619 3.7068 8.1069 18 7 -0.1635 3.1076 9.1586 19 6 -1.5281 3.2023 9.0954 20 1 -1.9958 3.7191 8.2704 21 6 -2.3102 2.6341 10.0915 22 7 -1.7401 2.0047 11.0971 23 14 -4.1717 2.7641 10.0055 24 1 -4.6558 2.1198 8.7581 25 1 -4.7703 2.0800 11.1798 26 1 -4.5689 4.1949 10.0100 27 6 2.2479 2.0244 3.6023 28 6 2.0186 1.3788 2.4089 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8407 38 1 3.8891 2.3449 -2.6546 39 1 2.8920 3.8574 0.2662 40 1 3.3044 5.0190 2.3905 41 1 2.4278 2.4824 6.0487 42 1 4.7320 2.8924 7.7917 43 1 5.0940 4.3933 6.9059 44 1 4.6666 4.4603 8.6323 45 1 2.3279 2.3871 8.4589 46 1 2.3908 3.9115 9.3758 47 1 0.4739 4.7795 8.0640 48 1 0.4111 3.2552 7.1471 49 1 0.2567 2.6437 9.8997 50 1 -2.2867 1.6074 11.7930 51 1 2.0685 1.5133 4.5367 52 1 1.6589 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320617239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:04 Heat of formation + Delta-G solvation = -24.439167 kcal Electronic energy + Delta-G solvation = -28279.692478 eV Core-core repulsion = 24471.156650 eV Total energy + Delta-G solvation = -3808.535828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31318 -40.23991 -37.99815 -37.36720 -36.08700 -33.73872 -33.42812 -32.64250 -31.68426 -31.25223 -29.43442 -28.85306 -25.92321 -24.99525 -24.94343 -23.35330 -22.89207 -22.41063 -21.67380 -20.83136 -19.38964 -18.92913 -17.88888 -17.41398 -16.86619 -16.68682 -16.10407 -15.94345 -15.57719 -15.48772 -15.37185 -15.14974 -14.94908 -14.84880 -14.58461 -14.27944 -14.25502 -14.00785 -13.68103 -13.60449 -13.23577 -13.18366 -13.08240 -12.87051 -12.85682 -12.75704 -12.68231 -12.36939 -12.30238 -12.12964 -12.00615 -11.91390 -11.86974 -11.64090 -11.53847 -10.95797 -10.88047 -10.84487 -10.05467 -9.96322 -9.01357 -8.27350 -7.96137 -5.25245 0.10425 0.50202 1.46489 1.49632 1.55944 1.98295 2.11408 2.28639 2.55190 3.01270 3.36936 3.61893 3.78957 3.88109 3.95819 4.06497 4.07922 4.17159 4.20306 4.24668 4.39225 4.39836 4.47169 4.49958 4.53495 4.53747 4.57203 4.66055 4.69119 4.77417 4.85994 4.87605 4.90558 4.97790 4.99783 5.01536 5.12064 5.22740 5.25769 5.27370 5.30404 5.33855 5.38266 5.39602 5.47532 5.51695 5.62147 5.79030 6.26326 6.32477 6.48260 6.62923 7.30805 7.32777 8.07474 8.32716 9.26916 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.002534 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.191484 B =11049.209911 C =13101.237384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.617 5.617 4 C 0.109 3.891 5 C -0.167 4.167 6 C 0.245 3.755 7 C -0.212 4.212 8 C -0.021 4.021 9 C -0.222 4.222 10 C 0.561 3.439 11 O -0.591 6.591 12 N -0.712 5.712 13 C 0.151 3.849 14 H 0.067 0.933 15 C -0.152 4.152 16 C -0.118 4.118 17 C 0.154 3.846 18 N -0.744 5.744 19 C -0.250 4.250 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.033 4.033 28 C -0.212 4.212 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.408 0.592 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.005 0.995 48 H 0.022 0.978 49 H 0.376 0.624 50 H 0.253 0.747 51 H 0.136 0.864 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 -5.446 -27.891 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.325 5.325 4 C -0.013 4.013 5 C -0.225 4.225 6 C 0.139 3.861 7 C -0.234 4.234 8 C -0.040 4.040 9 C -0.227 4.227 10 C 0.352 3.648 11 O -0.474 6.474 12 N -0.364 5.364 13 C 0.046 3.954 14 H 0.085 0.915 15 C -0.210 4.210 16 C -0.156 4.156 17 C 0.028 3.972 18 N -0.387 5.387 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.052 4.052 28 C -0.234 4.234 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.245 0.755 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.023 0.977 48 H 0.039 0.961 49 H 0.208 0.792 50 H 0.061 0.939 51 H 0.154 0.846 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.866 -4.711 -28.145 31.303 hybrid contribution -1.110 -0.258 0.693 1.333 sum 11.757 -4.969 -27.452 30.274 Atomic orbital electron populations 1.22192 0.96067 1.02765 1.01804 1.21618 0.94121 0.81425 1.03943 1.46872 1.68935 1.13838 1.02820 1.21629 0.97218 0.97985 0.84471 1.22171 0.96305 1.02345 1.01727 1.18136 0.90073 0.91134 0.86727 1.20746 1.09830 0.94394 0.98469 1.21008 0.93031 0.99048 0.90953 1.19600 1.13771 0.96720 0.92601 1.18549 0.76221 0.85427 0.84641 1.90699 1.48986 1.19382 1.88334 1.45974 1.67408 1.17862 1.05106 1.20829 0.95582 0.96714 0.82244 0.91487 1.22074 0.94037 1.02981 1.01899 1.21897 0.93070 1.02098 0.98533 1.20744 0.90443 0.94850 0.91182 1.42539 1.02760 1.66673 1.26766 1.19551 0.84263 1.28556 1.05762 0.91255 1.25561 1.02520 1.01250 0.97217 1.69798 1.35661 1.42713 1.13537 0.85223 0.80135 0.77604 0.76874 1.20255 1.21763 1.20669 1.21201 0.92771 0.92377 0.98882 1.20802 1.10300 1.01864 0.90476 0.92465 0.90387 0.93853 0.88812 0.90156 0.89037 0.90430 0.93566 0.92372 0.90304 0.83861 0.85866 0.75525 0.91091 0.93304 0.90396 0.90197 0.89949 0.97672 0.96055 0.79168 0.93857 0.84583 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 71.98 0.74 -0.96 16 2 C 0.11 1.02 5.87 86.38 0.51 1.53 16 3 N -0.62 -7.74 2.59 -697.31 -1.81 -9.55 16 4 C 0.11 0.96 5.87 86.38 0.51 1.47 16 5 C -0.17 -1.33 10.24 71.98 0.74 -0.60 16 6 C 0.25 4.38 6.55 38.47 0.25 4.64 16 7 C -0.21 -4.12 9.18 22.36 0.21 -3.91 16 8 C -0.02 -0.51 9.58 22.50 0.22 -0.29 16 9 C -0.22 -5.88 5.88 -20.07 -0.12 -6.00 16 10 C 0.56 17.61 7.73 86.69 0.67 18.28 16 11 O -0.59 -22.60 16.00 -4.00 -0.06 -22.66 16 12 N -0.71 -19.78 4.48 -445.72 -2.00 -21.77 16 13 C 0.15 4.37 2.57 44.99 0.12 4.48 16 14 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 15 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 16 C -0.12 -3.71 4.87 30.59 0.15 -3.56 16 17 C 0.15 6.39 6.15 86.38 0.53 6.92 16 18 N -0.74 -38.62 5.60 -343.44 -1.92 -40.55 16 19 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 23 Si 0.97 46.67 29.55 68.60 2.03 48.69 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C -0.03 -0.71 9.53 22.50 0.21 -0.50 16 28 C -0.21 -3.96 9.18 22.36 0.21 -3.76 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 33 H 0.08 0.73 6.17 -2.39 -0.01 0.72 16 34 H 0.09 0.53 8.07 -2.38 -0.02 0.51 16 35 H 0.08 0.71 6.17 -2.39 -0.01 0.70 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.14 2.16 6.11 -2.91 -0.02 2.14 16 40 H 0.12 3.16 7.64 -2.91 -0.02 3.14 16 41 H 0.41 9.74 6.62 -92.71 -0.61 9.13 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.02 0.88 7.75 -2.39 -0.02 0.86 16 49 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16 50 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.14 2.54 6.39 -2.91 -0.02 2.52 16 52 H 0.14 2.13 6.11 -2.91 -0.02 2.11 16 Total: -1.00 -73.22 419.19 3.02 -70.19 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.41 Total: 37.20 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.92 Total: -2.52 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.44 Total: -130.91 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.22 3.02 -70.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320617239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.752 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds