Wall clock time and date at job start Tue Mar 31 2020 17:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46785 * 2 1 4 4 C 1.53001 * 109.47458 * 239.99646 * 2 1 3 5 5 C 1.50703 * 109.46882 * 65.00099 * 4 2 1 6 6 O 1.21284 * 119.99966 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99914 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99889 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47067 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.49782 * 59.93922 * 9 8 7 11 11 C 1.53040 * 109.49898 * 180.02562 * 9 8 7 12 12 C 1.53042 * 109.53969 * 181.34805 * 11 9 8 13 13 C 1.53190 * 109.31352 * 298.63683 * 12 11 9 14 14 N 1.46929 * 108.77641 * 54.63565 * 13 12 11 15 15 C 1.36930 * 120.62917 * 126.11264 * 14 13 12 16 16 H 1.07996 * 120.00860 * 331.86810 * 15 14 13 17 17 C 1.38815 * 119.99653 * 151.86361 * 15 14 13 18 18 N 1.31621 * 119.99984 * 343.18307 * 17 15 14 19 19 Si 1.86800 * 120.00122 * 163.17986 * 17 15 14 20 20 H 1.48504 * 109.47115 * 90.00059 * 19 17 15 21 21 H 1.48500 * 109.47480 * 210.00260 * 19 17 15 22 22 H 1.48499 * 109.47007 * 330.00291 * 19 17 15 23 23 C 1.46925 * 118.73280 * 306.39152 * 14 13 12 24 24 N 1.46499 * 109.46991 * 119.99611 * 2 1 3 25 25 C 1.36344 * 125.63688 * 59.69550 * 24 2 1 26 26 C 1.34842 * 108.22140 * 179.82998 * 25 24 2 27 27 C 1.40892 * 107.41610 * 0.42537 * 26 25 24 28 28 C 1.34841 * 107.41561 * 359.73523 * 27 26 25 29 29 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47468 * 300.00397 * 1 2 3 31 31 H 1.08999 * 109.47210 * 60.00347 * 1 2 3 32 32 H 1.08996 * 109.46924 * 305.00694 * 4 2 1 33 33 H 1.09000 * 109.46928 * 184.99982 * 4 2 1 34 34 H 0.96999 * 119.99811 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.46712 * 60.00339 * 8 7 5 36 36 H 1.08994 * 109.47637 * 300.00545 * 8 7 5 37 37 H 1.08994 * 109.47050 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.46362 * 300.06422 * 10 9 8 39 39 H 1.08999 * 109.46682 * 60.06191 * 10 9 8 40 40 H 1.09000 * 109.46049 * 61.32972 * 11 9 8 41 41 H 1.09004 * 109.45254 * 301.36700 * 11 9 8 42 42 H 1.09003 * 109.49936 * 178.68513 * 12 11 9 43 43 H 1.09000 * 109.49528 * 58.58694 * 12 11 9 44 44 H 1.08998 * 109.58858 * 294.84601 * 13 12 11 45 45 H 1.09005 * 109.58376 * 174.41853 * 13 12 11 46 46 H 0.97002 * 120.00123 * 180.02562 * 18 17 15 47 47 H 1.09002 * 109.58116 * 173.39780 * 23 14 13 48 48 H 1.08997 * 109.58454 * 293.81695 * 23 14 13 49 49 H 1.08003 * 125.88658 * 359.95919 * 25 24 2 50 50 H 1.08004 * 126.28862 * 180.16109 * 26 25 24 51 51 H 1.08001 * 126.28953 * 179.73490 * 27 26 25 52 52 H 1.08002 * 125.88799 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0117 1.0874 -2.3633 7 7 1.9855 -0.3915 -3.7001 8 6 1.5974 0.3648 -4.8933 9 6 2.1087 -0.3557 -6.1423 10 6 1.5018 -1.7588 -6.2069 11 6 1.7042 0.4341 -7.3892 12 6 2.1861 -0.3031 -8.6408 13 6 3.7140 -0.4088 -8.6099 14 7 4.1191 -1.0380 -7.3455 15 6 4.9269 -2.1436 -7.3438 16 1 4.9136 -2.8235 -8.1828 17 6 5.7632 -2.3905 -6.2637 18 7 6.0349 -1.4278 -5.4083 19 14 6.5027 -4.0890 -6.0241 20 1 7.8057 -4.1660 -6.7324 21 1 6.7115 -4.3383 -4.5751 22 1 5.5790 -5.1132 -6.5745 23 6 3.6357 -0.4620 -6.0832 24 7 2.0182 -0.6905 1.1962 25 6 1.7559 -1.9867 1.5280 26 6 2.3798 -2.2586 2.6921 27 6 3.0439 -1.0844 3.0988 28 6 2.8053 -0.1416 2.1648 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2054 34 1 2.4893 -1.2154 -3.7906 35 1 2.0314 1.3636 -4.8473 36 1 0.5111 0.4423 -4.9371 37 1 1.8666 -2.2718 -7.0967 38 1 1.7905 -2.3206 -5.3187 39 1 0.4153 -1.6829 -6.2517 40 1 2.1574 1.4248 -7.3543 41 1 0.6191 0.5322 -7.4206 42 1 1.8774 0.2480 -9.5291 43 1 1.7526 -1.3030 -8.6635 44 1 4.1506 0.5876 -8.6786 45 1 4.0551 -1.0180 -9.4469 46 1 6.6196 -1.6002 -4.6537 47 1 3.9253 -1.1063 -5.2531 48 1 4.0660 0.5300 -5.9459 49 1 1.1539 -2.6772 0.9559 50 1 2.3686 -3.2017 3.2183 51 1 3.6354 -0.9621 3.9941 52 1 3.1738 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324973624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:27 Heat of formation + Delta-G solvation = 9.258533 kcal Electronic energy + Delta-G solvation = -29809.345542 eV Core-core repulsion = 26002.270955 eV Total energy + Delta-G solvation = -3807.074586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18138 -41.04663 -39.85314 -36.54570 -35.82524 -34.89519 -33.03954 -31.66127 -30.79676 -29.63171 -29.19256 -27.93113 -27.24937 -26.57229 -24.03612 -23.63803 -22.14365 -21.53080 -21.23916 -20.34593 -19.53854 -18.62991 -18.47590 -17.62739 -17.00435 -16.84947 -16.54242 -15.80234 -15.62439 -15.54303 -15.31706 -15.12725 -14.93862 -14.68335 -14.47853 -14.26670 -14.00817 -13.85614 -13.74054 -13.57719 -13.18013 -13.11017 -13.02090 -12.93971 -12.79358 -12.67171 -12.56868 -12.39271 -12.27606 -12.14543 -12.12105 -11.85439 -11.71345 -11.40303 -11.23204 -10.96677 -10.86535 -10.51168 -10.02562 -9.51681 -9.03306 -8.61028 -7.84198 -5.28760 1.39506 1.46387 1.50230 1.57641 1.57875 1.84469 2.18399 2.43096 2.52802 3.29134 3.45778 3.61193 3.72084 3.83599 3.96311 4.05065 4.05382 4.12173 4.20676 4.36686 4.41117 4.42554 4.50955 4.52614 4.56611 4.67789 4.74246 4.75997 4.76588 4.81942 4.85876 4.94268 5.00020 5.05161 5.12401 5.17710 5.18666 5.31003 5.34064 5.42066 5.42792 5.46564 5.48878 5.53855 5.63750 5.73323 5.79411 6.13174 6.37702 6.42161 6.49855 6.52504 7.16943 7.19042 7.89980 8.42400 9.21042 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.003328 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.257664 B = 8411.100411 C =10279.354838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.097 0.903 4 C -0.146 4.146 5 C 0.520 3.480 6 O -0.572 6.572 7 N -0.715 5.715 8 C 0.143 3.857 9 C -0.091 4.091 10 C -0.118 4.118 11 C -0.095 4.095 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.605 5.605 15 C -0.255 4.255 16 H 0.062 0.938 17 C -0.041 4.041 18 N -0.931 5.931 19 Si 0.955 3.045 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.198 3.802 24 N -0.444 5.444 25 C -0.020 4.020 26 C -0.222 4.222 27 C -0.220 4.220 28 C -0.030 4.030 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.407 0.593 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.006 0.994 45 H 0.050 0.950 46 H 0.248 0.752 47 H 0.065 0.935 48 H -0.021 1.021 49 H 0.176 0.824 50 H 0.144 0.856 51 H 0.143 0.857 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 0.498 8.461 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.115 0.885 4 C -0.186 4.186 5 C 0.307 3.693 6 O -0.453 6.453 7 N -0.366 5.366 8 C 0.019 3.981 9 C -0.093 4.093 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.162 4.162 13 C 0.010 3.990 14 N -0.327 5.327 15 C -0.385 4.385 16 H 0.080 0.920 17 C -0.237 4.237 18 N -0.577 5.577 19 Si 0.784 3.216 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.195 1.195 23 C 0.072 3.928 24 N -0.120 5.120 25 C -0.150 4.150 26 C -0.247 4.247 27 C -0.245 4.245 28 C -0.159 4.159 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.243 0.757 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.024 0.976 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.083 0.917 48 H -0.003 1.003 49 H 0.193 0.807 50 H 0.162 0.838 51 H 0.161 0.839 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.050 1.389 8.319 15.538 hybrid contribution 1.491 -0.958 0.147 1.778 sum -11.559 0.431 8.466 14.334 Atomic orbital electron populations 1.22180 0.92246 1.03313 1.03679 1.21012 0.96293 0.96147 0.81355 0.88455 1.21962 1.04015 1.01354 0.91274 1.20533 0.78631 0.85254 0.84917 1.90647 1.41920 1.25668 1.87066 1.46110 1.56689 1.28031 1.05756 1.21269 0.99489 0.94156 0.83184 1.21343 0.97481 0.96445 0.94054 1.21634 0.99471 0.94885 1.01566 1.21379 1.00849 0.97693 0.93407 1.21922 0.95847 1.00790 0.97676 1.21105 0.94311 0.94965 0.88603 1.44221 1.55519 1.31807 1.01187 1.19415 1.15102 0.99417 1.04595 0.91989 1.25615 0.98023 1.00183 0.99881 1.70179 1.39173 1.31624 1.16747 0.85471 0.78286 0.81281 0.76573 1.21904 1.21838 1.19486 1.20546 0.88570 0.94420 0.89250 1.44422 1.39094 1.10526 1.17983 1.22116 1.06625 0.86458 0.99794 1.21171 1.04983 0.99875 0.98647 1.21158 1.07243 0.94199 1.01851 1.22216 1.01458 1.00663 0.91592 0.91203 0.91917 0.89952 0.86251 0.88315 0.75693 0.93369 0.90569 0.92779 0.93978 0.91788 0.93142 0.90246 0.90317 0.91708 0.97582 0.93134 0.94252 0.91659 1.00263 0.80653 0.83843 0.83909 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.97 71.98 0.65 -2.43 16 2 C 0.15 3.28 2.67 44.99 0.12 3.40 16 3 H 0.10 2.24 7.88 -2.39 -0.02 2.22 16 4 C -0.15 -3.18 5.17 29.85 0.15 -3.03 16 5 C 0.52 14.26 7.55 87.66 0.66 14.92 16 6 O -0.57 -18.32 13.97 -3.04 -0.04 -18.37 16 7 N -0.71 -20.54 5.00 -463.07 -2.31 -22.86 16 8 C 0.14 4.27 4.57 86.38 0.39 4.67 16 9 C -0.09 -2.94 0.53 -52.11 -0.03 -2.97 16 10 C -0.12 -3.57 7.81 71.98 0.56 -3.01 16 11 C -0.10 -2.75 4.71 30.62 0.14 -2.61 16 12 C -0.12 -3.71 5.74 30.67 0.18 -3.53 16 13 C 0.14 5.33 6.52 86.36 0.56 5.89 16 14 N -0.60 -28.21 2.43 -699.11 -1.70 -29.90 16 15 C -0.25 -13.18 9.58 84.04 0.81 -12.38 16 16 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 17 C -0.04 -2.18 4.92 84.86 0.42 -1.76 16 18 N -0.93 -51.92 11.20 21.65 0.24 -51.68 16 19 Si 0.96 42.65 29.59 68.60 2.03 44.68 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.20 8.62 3.73 86.36 0.32 8.94 16 24 N -0.44 -9.73 2.62 -502.02 -1.31 -11.04 16 25 C -0.02 -0.42 10.45 83.21 0.87 0.45 16 26 C -0.22 -4.91 10.86 22.14 0.24 -4.67 16 27 C -0.22 -4.95 10.86 22.14 0.24 -4.71 16 28 C -0.03 -0.66 11.39 83.21 0.95 0.29 16 29 H 0.07 1.19 7.91 -2.39 -0.02 1.17 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.89 5.95 -2.39 -0.01 1.87 16 32 H 0.12 2.12 8.06 -2.39 -0.02 2.10 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.41 11.93 6.22 -92.71 -0.58 11.35 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.85 5.97 -2.39 -0.01 1.84 16 38 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 1.95 6.34 -2.39 -0.02 1.93 16 44 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.05 1.96 7.93 -2.38 -0.02 1.94 16 46 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 47 H 0.07 3.12 4.97 -2.39 -0.01 3.11 16 48 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 50 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 51 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 52 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -62.73 400.07 4.46 -58.27 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.31 Total: 33.44 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 7.24 Total: -2.54 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -5.08 Total: -115.49 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.73 4.46 -58.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324973624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.529 kcal (2) G-P(sol) polarization free energy of solvation -62.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds