Wall clock time and date at job start Tue Mar 31 2020 18:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00445 * 2 1 4 4 O 1.21277 * 120.00309 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.99858 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46856 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46716 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47162 * 180.02562 * 7 6 5 9 9 C 1.36346 * 125.63215 * 89.99978 * 8 7 6 10 10 C 1.34859 * 108.21698 * 179.97438 * 9 8 7 11 11 C 1.40890 * 107.41429 * 0.02562 * 10 9 8 12 12 C 1.34850 * 107.42083 * 359.97438 * 11 10 9 13 13 C 1.46499 * 119.99990 * 180.02562 * 2 1 3 14 14 C 1.52995 * 109.47410 * 125.82122 * 13 2 1 15 15 C 1.53001 * 109.47194 * 300.00111 * 14 13 2 16 16 C 1.53007 * 109.46910 * 300.00046 * 15 14 13 17 17 N 1.46498 * 109.46889 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00350 * 85.00089 * 17 16 15 19 19 H 1.07997 * 119.99985 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00281 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99887 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47474 * 59.99533 * 22 20 18 24 24 H 1.48502 * 109.47254 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47110 * 299.99522 * 22 20 18 26 26 C 1.52995 * 109.47230 * 59.99976 * 16 15 14 27 27 C 1.53001 * 109.47194 * 299.99851 * 26 16 15 28 28 H 1.09001 * 109.47130 * 84.07175 * 1 2 3 29 29 H 1.08988 * 109.47473 * 204.07897 * 1 2 3 30 30 H 1.08999 * 109.46853 * 324.08301 * 1 2 3 31 31 H 1.08998 * 109.46547 * 60.00110 * 5 3 2 32 32 H 1.08996 * 109.47088 * 300.00072 * 5 3 2 33 33 H 1.08998 * 109.47168 * 60.00839 * 6 5 3 34 34 H 1.08996 * 109.47615 * 300.00097 * 6 5 3 35 35 H 1.09001 * 109.47238 * 60.00339 * 7 6 5 36 36 H 1.09001 * 109.47494 * 300.00300 * 7 6 5 37 37 H 1.07995 * 125.89186 * 359.71617 * 9 8 7 38 38 H 1.07990 * 126.28999 * 180.02562 * 10 9 8 39 39 H 1.08006 * 126.28813 * 180.02562 * 11 10 9 40 40 H 1.07999 * 125.89061 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.47275 * 245.82286 * 13 2 1 42 42 H 1.09001 * 109.47250 * 60.00191 * 14 13 2 43 43 H 1.09004 * 109.47192 * 179.97438 * 14 13 2 44 44 H 1.09003 * 109.47327 * 180.02562 * 15 14 13 45 45 H 1.08995 * 109.47100 * 59.99826 * 15 14 13 46 46 H 1.09004 * 109.47004 * 299.99895 * 16 15 14 47 47 H 0.96997 * 119.99815 * 265.00044 * 17 16 15 48 48 H 0.96994 * 120.00241 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.47250 * 179.97438 * 26 16 15 50 50 H 1.09004 * 109.47192 * 60.00035 * 26 16 15 51 51 H 1.08995 * 109.47100 * 300.00174 * 27 26 16 52 52 H 1.08993 * 109.47180 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3799 3.6352 0.0002 7 6 1.6149 4.9602 0.0002 8 7 2.5669 6.0737 0.0004 9 6 3.0831 6.6775 -1.1078 10 6 3.9189 7.6559 -0.7040 11 6 3.9190 7.6556 0.7049 12 6 3.0829 6.6776 1.1085 13 6 2.1975 -1.2687 -0.0006 14 6 3.1836 -1.2878 -1.1702 15 6 2.4170 -1.1410 -2.4861 16 6 1.4291 -2.3001 -2.6329 17 7 0.6955 -2.1598 -3.8931 18 6 1.2332 -2.6435 -5.0559 19 1 2.1983 -3.1280 -5.0440 20 6 0.5382 -2.5101 -6.2501 21 7 -0.6378 -1.9191 -6.2648 22 14 1.2721 -3.1692 -7.8365 23 1 1.4908 -4.6326 -7.7102 24 1 0.3394 -2.9038 -8.9611 25 1 2.5693 -2.4957 -8.0991 26 6 0.4430 -2.2810 -1.4633 27 6 1.2096 -2.4279 -0.1473 28 1 -0.3633 0.1061 -1.0222 29 1 -0.3634 -0.9381 0.4192 30 1 -0.3633 0.8323 0.6028 31 1 0.7585 2.5302 0.8892 32 1 0.7592 2.5299 -0.8908 33 1 3.0071 3.5775 -0.8894 34 1 3.0059 3.5775 0.8906 35 1 0.9879 5.0178 0.8900 36 1 0.9886 5.0183 -0.8900 37 1 2.8641 6.4146 -2.1321 38 1 4.4841 8.3178 -1.3432 39 1 4.4841 8.3177 1.3442 40 1 2.8604 6.4176 2.1328 41 1 2.7437 -1.3734 0.9369 42 1 3.8874 -0.4621 -1.0656 43 1 3.7289 -2.2317 -1.1703 44 1 3.1195 -1.1550 -3.3194 45 1 1.8720 -0.1970 -2.4857 46 1 1.9741 -3.2441 -2.6332 47 1 -0.1712 -1.7244 -3.9039 48 1 -1.1235 -1.8262 -7.0992 49 1 -0.2611 -3.1065 -1.5681 50 1 -0.1020 -1.3370 -1.4629 51 1 1.7545 -3.3718 -0.1477 52 1 0.5071 -2.4138 0.6859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329257035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:22 Heat of formation + Delta-G solvation = 31.053951 kcal Electronic energy + Delta-G solvation = -29247.834031 eV Core-core repulsion = 25441.704565 eV Total energy + Delta-G solvation = -3806.129466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24075 -40.58679 -38.06077 -35.22872 -35.07955 -33.30284 -31.61221 -30.86552 -30.62722 -28.88613 -28.16626 -26.94224 -26.06925 -23.67262 -22.76624 -22.24721 -20.98931 -20.58536 -20.09863 -19.78433 -18.69073 -17.61505 -17.13088 -16.69625 -16.32418 -15.81377 -15.36831 -14.98310 -14.76445 -14.28238 -14.03493 -13.91900 -13.76833 -13.47720 -13.29733 -13.14648 -12.91904 -12.55423 -12.49248 -12.33047 -12.19240 -12.11589 -12.06272 -12.02824 -11.78621 -11.68429 -11.56224 -11.12343 -11.03929 -10.86187 -10.60239 -10.37381 -10.16389 -10.12512 -9.67835 -9.58896 -9.40766 -8.82960 -8.73660 -8.50446 -8.27450 -6.94230 -5.77055 -3.04768 2.15242 2.65426 2.74820 2.95554 3.06310 3.43540 3.48057 3.48871 4.31218 4.38356 4.58404 4.62836 4.79372 4.89160 4.91422 4.98166 5.03583 5.04507 5.10402 5.15061 5.17904 5.26250 5.38420 5.45130 5.52055 5.53396 5.59694 5.65896 5.72024 5.74488 5.79379 5.88113 5.94383 5.97320 6.04151 6.11724 6.17111 6.20317 6.29888 6.43440 6.52594 6.59302 6.68218 6.87318 6.87779 7.03249 7.11563 7.16709 7.25625 7.43634 7.70222 8.22727 8.42361 9.53169 10.11773 10.46302 11.45825 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002611 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.398485 B =10720.340837 C =12262.258009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.515 3.485 4 O -0.537 6.537 5 C -0.138 4.138 6 C -0.119 4.119 7 C 0.104 3.896 8 N -0.446 5.446 9 C -0.013 4.013 10 C -0.206 4.206 11 C -0.205 4.205 12 C -0.017 4.017 13 C 0.155 3.845 14 C -0.139 4.139 15 C -0.124 4.124 16 C 0.179 3.821 17 N -0.725 5.725 18 C -0.235 4.235 19 H 0.068 0.932 20 C -0.015 4.015 21 N -0.936 5.936 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.144 4.144 27 C -0.122 4.122 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.381 0.619 48 H 0.255 0.745 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 11.982 18.947 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C 0.303 3.697 4 O -0.415 6.415 5 C -0.179 4.179 6 C -0.157 4.157 7 C -0.018 4.018 8 N -0.121 5.121 9 C -0.143 4.143 10 C -0.230 4.230 11 C -0.230 4.230 12 C -0.147 4.147 13 C 0.052 3.948 14 C -0.178 4.178 15 C -0.165 4.165 16 C 0.069 3.931 17 N -0.365 5.365 18 C -0.366 4.366 19 H 0.086 0.914 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.182 4.182 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.177 0.823 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.175 0.825 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.215 0.785 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.598 11.582 18.790 22.130 hybrid contribution -0.001 -0.289 -1.045 1.084 sum 1.597 11.293 17.745 21.094 Atomic orbital electron populations 1.22164 0.80023 1.03215 1.02226 1.47854 1.06780 1.05896 1.73065 1.20408 0.87962 0.85125 0.76231 1.90652 1.13947 1.87255 1.49626 1.21619 0.99258 0.92465 1.04520 1.21700 0.97959 0.91144 1.04932 1.21915 0.90722 0.84825 1.04337 1.44146 1.35182 1.26645 1.06145 1.21887 1.02031 0.98691 0.91662 1.20899 1.04530 1.02406 0.95211 1.20885 1.04523 1.02342 0.95239 1.21803 1.02367 0.99023 0.91512 1.21038 0.92864 0.82263 0.98618 1.22023 0.98307 1.02741 0.94729 1.22113 0.98872 1.00388 0.95117 1.20203 0.91551 0.95479 0.85827 1.42397 1.21605 1.70326 1.02186 1.19198 1.01475 1.30101 0.85823 0.91372 1.24713 0.96959 1.01662 0.97724 1.69640 1.13853 1.48793 1.26152 0.86296 0.78013 0.78624 0.83449 1.21318 1.21719 1.21318 1.22285 0.98963 1.03027 0.93903 1.21835 0.98119 0.97751 0.98326 0.91255 0.89763 0.91975 0.88889 0.88450 0.90227 0.90529 0.89312 0.89063 0.82256 0.84929 0.84999 0.82475 0.91640 0.89887 0.91879 0.92503 0.93239 0.93952 0.78528 0.93558 0.91900 0.90490 0.90492 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.06 59.85 0.48 1.09 16 2 N -0.60 -7.17 2.28 -173.94 -0.40 -7.56 16 3 C 0.51 6.60 7.21 -10.98 -0.08 6.52 16 4 O -0.54 -8.85 13.69 5.56 0.08 -8.77 16 5 C -0.14 -1.20 4.33 -27.88 -0.12 -1.32 16 6 C -0.12 -1.11 4.83 -26.73 -0.13 -1.24 16 7 C 0.10 0.77 6.09 -4.04 -0.02 0.74 16 8 N -0.45 -4.39 2.75 -117.13 -0.32 -4.71 16 9 C -0.01 -0.14 11.43 -16.74 -0.19 -0.33 16 10 C -0.21 -2.24 10.86 -39.78 -0.43 -2.67 16 11 C -0.21 -2.16 10.86 -39.78 -0.43 -2.59 16 12 C -0.02 -0.17 11.43 -16.75 -0.19 -0.36 16 13 C 0.15 2.00 3.05 -67.93 -0.21 1.80 16 14 C -0.14 -2.18 5.14 -26.73 -0.14 -2.31 16 15 C -0.12 -2.31 5.34 -26.73 -0.14 -2.45 16 16 C 0.18 3.47 2.77 -67.93 -0.19 3.29 16 17 N -0.72 -17.85 5.12 -53.42 -0.27 -18.12 16 18 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.94 -28.00 13.06 55.49 0.72 -27.27 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.14 -2.16 4.84 -26.73 -0.13 -2.29 16 27 C -0.12 -1.45 4.91 -26.73 -0.13 -1.58 16 28 H 0.07 0.72 6.49 -51.93 -0.34 0.39 16 29 H 0.08 0.70 5.26 -51.94 -0.27 0.43 16 30 H 0.06 0.40 6.69 -51.93 -0.35 0.05 16 31 H 0.09 0.56 7.42 -51.93 -0.39 0.17 16 32 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.44 5.76 -51.93 -0.30 1.14 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.96 7.46 -51.93 -0.39 0.57 16 46 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 47 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.08 1.10 3.95 -51.93 -0.20 0.89 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.06 0.62 6.67 -51.93 -0.35 0.27 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -33.79 399.59 -10.27 -44.06 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.78 Total: 9.77 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.30 Total: -10.88 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.27 Total: -57.67 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.79 -10.27 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329257035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.112 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds