Wall clock time and date at job start Tue Mar 31 2020 18:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00445 * 2 1 4 4 O 1.21277 * 120.00309 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.99858 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46856 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46716 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47162 * 180.02562 * 7 6 5 9 9 C 1.36346 * 125.63215 * 89.99978 * 8 7 6 10 10 C 1.34859 * 108.21698 * 179.97438 * 9 8 7 11 11 C 1.40890 * 107.41429 * 0.02562 * 10 9 8 12 12 C 1.34850 * 107.42083 * 359.97438 * 11 10 9 13 13 C 1.46499 * 119.99990 * 180.02562 * 2 1 3 14 14 C 1.52995 * 109.47410 * 125.82122 * 13 2 1 15 15 C 1.53001 * 109.47194 * 300.00111 * 14 13 2 16 16 C 1.53007 * 109.46910 * 300.00046 * 15 14 13 17 17 N 1.46498 * 109.46889 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00350 * 85.00089 * 17 16 15 19 19 H 1.07997 * 119.99985 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00281 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99887 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47474 * 59.99533 * 22 20 18 24 24 H 1.48502 * 109.47254 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47110 * 299.99522 * 22 20 18 26 26 C 1.52995 * 109.47230 * 59.99976 * 16 15 14 27 27 C 1.53001 * 109.47194 * 299.99851 * 26 16 15 28 28 H 1.09001 * 109.47130 * 84.07175 * 1 2 3 29 29 H 1.08988 * 109.47473 * 204.07897 * 1 2 3 30 30 H 1.08999 * 109.46853 * 324.08301 * 1 2 3 31 31 H 1.08998 * 109.46547 * 60.00110 * 5 3 2 32 32 H 1.08996 * 109.47088 * 300.00072 * 5 3 2 33 33 H 1.08998 * 109.47168 * 60.00839 * 6 5 3 34 34 H 1.08996 * 109.47615 * 300.00097 * 6 5 3 35 35 H 1.09001 * 109.47238 * 60.00339 * 7 6 5 36 36 H 1.09001 * 109.47494 * 300.00300 * 7 6 5 37 37 H 1.07995 * 125.89186 * 359.71617 * 9 8 7 38 38 H 1.07990 * 126.28999 * 180.02562 * 10 9 8 39 39 H 1.08006 * 126.28813 * 180.02562 * 11 10 9 40 40 H 1.07999 * 125.89061 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.47275 * 245.82286 * 13 2 1 42 42 H 1.09001 * 109.47250 * 60.00191 * 14 13 2 43 43 H 1.09004 * 109.47192 * 179.97438 * 14 13 2 44 44 H 1.09003 * 109.47327 * 180.02562 * 15 14 13 45 45 H 1.08995 * 109.47100 * 59.99826 * 15 14 13 46 46 H 1.09004 * 109.47004 * 299.99895 * 16 15 14 47 47 H 0.96997 * 119.99815 * 265.00044 * 17 16 15 48 48 H 0.96994 * 120.00241 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.47250 * 179.97438 * 26 16 15 50 50 H 1.09004 * 109.47192 * 60.00035 * 26 16 15 51 51 H 1.08995 * 109.47100 * 300.00174 * 27 26 16 52 52 H 1.08993 * 109.47180 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3799 3.6352 0.0002 7 6 1.6149 4.9602 0.0002 8 7 2.5669 6.0737 0.0004 9 6 3.0831 6.6775 -1.1078 10 6 3.9189 7.6559 -0.7040 11 6 3.9190 7.6556 0.7049 12 6 3.0829 6.6776 1.1085 13 6 2.1975 -1.2687 -0.0006 14 6 3.1836 -1.2878 -1.1702 15 6 2.4170 -1.1410 -2.4861 16 6 1.4291 -2.3001 -2.6329 17 7 0.6955 -2.1598 -3.8931 18 6 1.2332 -2.6435 -5.0559 19 1 2.1983 -3.1280 -5.0440 20 6 0.5382 -2.5101 -6.2501 21 7 -0.6378 -1.9191 -6.2648 22 14 1.2721 -3.1692 -7.8365 23 1 1.4908 -4.6326 -7.7102 24 1 0.3394 -2.9038 -8.9611 25 1 2.5693 -2.4957 -8.0991 26 6 0.4430 -2.2810 -1.4633 27 6 1.2096 -2.4279 -0.1473 28 1 -0.3633 0.1061 -1.0222 29 1 -0.3634 -0.9381 0.4192 30 1 -0.3633 0.8323 0.6028 31 1 0.7585 2.5302 0.8892 32 1 0.7592 2.5299 -0.8908 33 1 3.0071 3.5775 -0.8894 34 1 3.0059 3.5775 0.8906 35 1 0.9879 5.0178 0.8900 36 1 0.9886 5.0183 -0.8900 37 1 2.8641 6.4146 -2.1321 38 1 4.4841 8.3178 -1.3432 39 1 4.4841 8.3177 1.3442 40 1 2.8604 6.4176 2.1328 41 1 2.7437 -1.3734 0.9369 42 1 3.8874 -0.4621 -1.0656 43 1 3.7289 -2.2317 -1.1703 44 1 3.1195 -1.1550 -3.3194 45 1 1.8720 -0.1970 -2.4857 46 1 1.9741 -3.2441 -2.6332 47 1 -0.1712 -1.7244 -3.9039 48 1 -1.1235 -1.8262 -7.0992 49 1 -0.2611 -3.1065 -1.5681 50 1 -0.1020 -1.3370 -1.4629 51 1 1.7545 -3.3718 -0.1477 52 1 0.5071 -2.4138 0.6859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329257035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:21 Heat of formation + Delta-G solvation = 12.297299 kcal Electronic energy + Delta-G solvation = -29248.647380 eV Core-core repulsion = 25441.704565 eV Total energy + Delta-G solvation = -3806.942816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98039 -41.61465 -39.25268 -36.61640 -35.92273 -34.83182 -32.96843 -32.00581 -31.92185 -29.66164 -29.63077 -27.72107 -27.13264 -25.46621 -23.76084 -23.46585 -22.22787 -21.33787 -21.03342 -20.81748 -19.74351 -19.10238 -18.38698 -17.60819 -17.24466 -17.06555 -16.62459 -16.23368 -15.67362 -15.50880 -15.31722 -15.19419 -14.87788 -14.69906 -14.41204 -14.11067 -14.00047 -13.78447 -13.60977 -13.32211 -13.14208 -13.06751 -12.97692 -12.92978 -12.85857 -12.79936 -12.75297 -12.62418 -12.44281 -12.21160 -12.06941 -11.92910 -11.80303 -11.45076 -11.32627 -11.09112 -10.91964 -10.40931 -9.49884 -9.48831 -9.04300 -8.98711 -7.95804 -5.22535 1.39154 1.44008 1.46104 1.52136 1.71047 2.01401 2.16109 2.25236 2.54216 3.36673 3.51342 3.76172 3.78745 3.85821 3.90682 3.93017 4.21829 4.26344 4.30009 4.31425 4.37433 4.38041 4.40663 4.42809 4.49447 4.59066 4.60872 4.65337 4.67631 4.71361 4.77727 4.79633 4.85686 4.95797 5.01143 5.07235 5.15016 5.20280 5.23872 5.27966 5.30220 5.40792 5.45262 5.46750 5.54958 5.63911 5.76530 6.11132 6.27942 6.35586 6.51630 6.56584 7.28136 7.33678 8.11559 8.34952 9.27269 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011447 B = 0.002611 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.398485 B =10720.340837 C =12262.258009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.603 5.603 3 C 0.503 3.497 4 O -0.584 6.584 5 C -0.129 4.129 6 C -0.109 4.109 7 C 0.106 3.894 8 N -0.450 5.450 9 C -0.031 4.031 10 C -0.227 4.227 11 C -0.228 4.228 12 C -0.020 4.020 13 C 0.156 3.844 14 C -0.132 4.132 15 C -0.109 4.109 16 C 0.174 3.826 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.066 0.934 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.284 1.284 26 C -0.135 4.135 27 C -0.110 4.110 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.170 0.830 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.183 0.817 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.039 0.961 46 H 0.031 0.969 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.082 0.918 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 11.751 21.183 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.336 5.336 3 C 0.293 3.707 4 O -0.465 6.465 5 C -0.169 4.169 6 C -0.148 4.148 7 C -0.015 4.015 8 N -0.125 5.125 9 C -0.161 4.161 10 C -0.252 4.252 11 C -0.253 4.253 12 C -0.151 4.151 13 C 0.053 3.947 14 C -0.171 4.171 15 C -0.149 4.149 16 C 0.066 3.934 17 N -0.374 5.374 18 C -0.370 4.370 19 H 0.084 0.916 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.211 1.211 26 C -0.173 4.173 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.187 0.813 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.200 0.800 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.106 0.894 51 H 0.101 0.899 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.116 11.332 21.060 23.915 hybrid contribution 0.530 -0.215 -1.713 1.806 sum 0.647 11.117 19.347 22.323 Atomic orbital electron populations 1.22372 0.77962 1.05650 1.02235 1.47971 1.08040 1.05245 1.72301 1.21193 0.87738 0.86591 0.75226 1.90637 1.16118 1.87991 1.51721 1.21641 0.98877 0.89526 1.06860 1.21550 0.97860 0.92868 1.02494 1.22060 0.90174 0.82773 1.06479 1.44364 1.35353 1.26933 1.05876 1.22176 1.02356 0.98986 0.92562 1.21187 1.05093 1.03033 0.95888 1.21193 1.05426 1.03328 0.95343 1.22272 1.01697 0.98477 0.92610 1.20971 0.92809 0.83537 0.97403 1.21913 0.98548 1.02254 0.94345 1.21878 0.97952 0.99504 0.95614 1.20434 0.92410 0.94833 0.85702 1.42578 1.21560 1.70073 1.03228 1.19508 1.01219 1.29131 0.87175 0.91607 1.25448 0.97637 1.02789 1.00681 1.69775 1.15039 1.50425 1.26486 0.85330 0.77120 0.78313 0.79739 1.20419 1.21865 1.21060 1.22209 0.98004 1.03630 0.93440 1.21787 0.98185 0.97379 0.97480 0.92663 0.88387 0.88316 0.84921 0.87303 0.93724 0.92006 0.86251 0.87816 0.81294 0.84378 0.83944 0.79961 0.90538 0.91752 0.91331 0.96232 0.94258 0.95128 0.79489 0.94030 0.92183 0.89399 0.89913 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 8.06 127.77 1.03 1.88 16 2 N -0.60 -12.89 2.28 -822.61 -1.87 -14.76 16 3 C 0.50 12.17 7.21 87.66 0.63 12.80 16 4 O -0.58 -19.40 13.69 -3.02 -0.04 -19.44 16 5 C -0.13 -1.89 4.33 29.85 0.13 -1.77 16 6 C -0.11 -1.92 4.83 30.60 0.15 -1.77 16 7 C 0.11 1.32 6.09 86.38 0.53 1.85 16 8 N -0.45 -8.35 2.75 -524.48 -1.44 -9.79 16 9 C -0.03 -0.64 11.43 83.21 0.95 0.31 16 10 C -0.23 -5.01 10.86 22.14 0.24 -4.77 16 11 C -0.23 -4.73 10.86 22.14 0.24 -4.49 16 12 C -0.02 -0.38 11.43 83.21 0.95 0.58 16 13 C 0.16 3.71 3.05 44.99 0.14 3.85 16 14 C -0.13 -4.12 5.14 30.59 0.16 -3.96 16 15 C -0.11 -4.16 5.34 30.60 0.16 -3.99 16 16 C 0.17 6.78 2.77 44.99 0.12 6.90 16 17 N -0.73 -36.75 5.12 -322.94 -1.65 -38.40 16 18 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 19 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 22 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 26 C -0.14 -3.80 4.84 30.59 0.15 -3.65 16 27 C -0.11 -2.26 4.91 30.60 0.15 -2.11 16 28 H 0.06 0.99 6.49 -2.39 -0.02 0.98 16 29 H 0.10 1.16 5.26 -2.39 -0.01 1.15 16 30 H 0.10 0.73 6.69 -2.39 -0.02 0.72 16 31 H 0.13 0.92 7.42 -2.39 -0.02 0.91 16 32 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 33 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.14 2.68 8.06 -2.92 -0.02 2.65 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 2.30 5.76 -2.39 -0.01 2.29 16 43 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.04 1.55 7.46 -2.39 -0.02 1.53 16 46 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 47 H 0.37 19.64 7.80 -92.71 -0.72 18.92 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.09 2.32 3.95 -2.38 -0.01 2.31 16 51 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.10 1.43 6.67 -2.39 -0.02 1.42 16 Total: -1.00 -76.78 399.59 4.51 -72.27 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.18 Total: 34.35 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 7.03 Total: -14.69 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -4.69 Total: -121.27 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.04 Total: -19.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.78 4.51 -72.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329257035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.572 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds