Wall clock time and date at job start Tue Mar 31 2020 17:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.47242 * 2 1 4 4 C 1.53001 * 109.46940 * 240.00736 * 2 1 3 5 5 N 1.46501 * 109.47008 * 185.00314 * 4 2 1 6 6 C 1.34778 * 119.99755 * 180.27414 * 5 4 2 7 7 O 1.21552 * 119.99960 * 359.72107 * 6 5 4 8 8 C 1.47847 * 119.99942 * 179.72066 * 6 5 4 9 9 C 1.39580 * 120.14012 * 359.72475 * 8 6 5 10 10 C 1.37963 * 119.84653 * 179.74396 * 9 8 6 11 11 C 1.38355 * 120.14631 * 0.53426 * 10 9 8 12 12 C 1.50702 * 119.85359 * 179.72179 * 11 10 9 13 13 C 1.53001 * 109.46992 * 270.01517 * 12 11 10 14 14 N 1.46897 * 109.47367 * 179.97438 * 13 12 11 15 15 C 1.46905 * 110.99826 * 66.05003 * 14 13 12 16 16 C 1.46896 * 111.00173 * 190.00176 * 14 13 12 17 17 C 1.38364 * 120.29196 * 359.73808 * 11 10 9 18 18 C 1.37952 * 120.14450 * 359.97438 * 17 11 10 19 19 N 1.46497 * 109.47010 * 120.00404 * 2 1 3 20 20 C 1.46503 * 119.99953 * 60.00294 * 19 2 1 21 21 C 1.36939 * 119.99903 * 239.99544 * 19 2 1 22 22 H 1.07995 * 120.00012 * 23.11302 * 21 19 2 23 23 C 1.38811 * 119.99707 * 203.10828 * 21 19 2 24 24 N 1.31614 * 120.00513 * 11.69744 * 23 21 19 25 25 Si 1.86804 * 119.99555 * 191.69384 * 23 21 19 26 26 H 1.48497 * 109.47323 * 90.00526 * 25 23 21 27 27 H 1.48501 * 109.47010 * 210.00153 * 25 23 21 28 28 H 1.48500 * 109.47152 * 330.00142 * 25 23 21 29 29 H 1.09002 * 109.46965 * 59.99256 * 1 2 3 30 30 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46438 * 299.99883 * 1 2 3 32 32 H 1.08991 * 109.47371 * 64.99505 * 4 2 1 33 33 H 1.09006 * 109.46803 * 305.00170 * 4 2 1 34 34 H 0.96998 * 119.99932 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.07544 * 0.02562 * 9 8 6 36 36 H 1.08004 * 119.92665 * 180.27313 * 10 9 8 37 37 H 1.08999 * 109.47013 * 30.01739 * 12 11 10 38 38 H 1.08999 * 109.47003 * 150.01981 * 12 11 10 39 39 H 1.08998 * 109.47211 * 300.00477 * 13 12 11 40 40 H 1.09005 * 109.46523 * 60.00120 * 13 12 11 41 41 H 1.08997 * 109.47391 * 59.99461 * 15 14 13 42 42 H 1.09001 * 109.47090 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.47139 * 300.00283 * 15 14 13 44 44 H 1.09000 * 109.47201 * 60.00278 * 16 14 13 45 45 H 1.08999 * 109.47051 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.47253 * 300.00120 * 16 14 13 47 47 H 1.08003 * 119.92150 * 180.02562 * 17 11 10 48 48 H 1.08006 * 120.06949 * 180.02562 * 18 17 11 49 49 H 1.08994 * 109.47388 * 93.93546 * 20 19 2 50 50 H 1.09005 * 109.46863 * 213.93756 * 20 19 2 51 51 H 1.08994 * 109.46986 * 333.93244 * 20 19 2 52 52 H 0.96994 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1735 -1.4237 -2.1938 7 8 3.5690 -1.8796 -3.1447 8 6 5.6475 -1.5244 -2.1375 9 6 6.3450 -0.9968 -1.0497 10 6 7.7200 -1.0988 -1.0009 11 6 8.4082 -1.7126 -2.0323 12 6 9.9107 -1.8148 -1.9752 13 6 10.5312 -0.5817 -2.6350 14 7 11.9957 -0.6810 -2.5788 15 6 12.4796 -1.7981 -3.4011 16 6 12.6251 0.5827 -2.9848 17 6 7.7232 -2.2326 -3.1162 18 6 6.3478 -2.1425 -3.1745 19 7 2.0184 -0.6907 1.1961 20 6 1.6645 -2.0933 1.4278 21 6 2.8057 -0.0253 2.0975 22 1 2.7709 1.0527 2.1524 23 6 3.6485 -0.7364 2.9406 24 7 3.8670 -2.0164 2.7261 25 14 4.4726 0.1235 4.3797 26 1 3.6010 0.0283 5.5783 27 1 5.7772 -0.5266 4.6636 28 1 4.6947 1.5523 4.0413 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9825 -0.4622 -0.4320 35 1 5.8092 -0.5138 -0.2460 36 1 8.2607 -0.6949 -0.1577 37 1 10.2317 -1.8707 -0.9350 38 1 10.2342 -2.7114 -2.5040 39 1 10.2101 -0.5258 -3.6751 40 1 10.2076 0.3148 -2.1061 41 1 12.1792 -1.6432 -4.4374 42 1 13.5667 -1.8491 -3.3413 43 1 12.0516 -2.7311 -3.0346 44 1 12.3030 1.3805 -2.3155 45 1 13.7092 0.4813 -2.9345 46 1 12.3301 0.8239 -4.0060 47 1 8.2664 -2.7109 -3.9178 48 1 5.8143 -2.5492 -4.0210 49 1 2.4508 -2.7365 1.0327 50 1 1.5553 -2.2684 2.4981 51 1 0.7240 -2.3185 0.9250 52 1 4.4556 -2.5134 3.3155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329549508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:38 Heat of formation + Delta-G solvation = 10.449124 kcal Electronic energy + Delta-G solvation = -28913.254882 eV Core-core repulsion = 25106.231923 eV Total energy + Delta-G solvation = -3807.022958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.89004 -38.58416 -37.52461 -36.62166 -33.73100 -33.17932 -32.04031 -30.73577 -29.46925 -28.96100 -27.88327 -26.07772 -25.97466 -24.69035 -23.08979 -22.50756 -22.11099 -21.01915 -19.71440 -19.34618 -17.44101 -16.93051 -16.16798 -15.95231 -15.53573 -15.29082 -15.18651 -14.71532 -14.60084 -14.53296 -14.29479 -13.91364 -13.45976 -13.27381 -13.11905 -12.93955 -12.78375 -12.60756 -12.56200 -12.20163 -12.11654 -12.09055 -12.00311 -11.67160 -11.52488 -11.24852 -11.18013 -11.07868 -10.83957 -10.73868 -10.71065 -10.41783 -10.30718 -9.89040 -9.80401 -9.43076 -8.81676 -8.71902 -8.63021 -8.61287 -8.28265 -6.83387 -5.78211 -3.26917 1.06252 1.55437 3.22043 3.32399 3.39888 3.41187 3.66423 3.81268 4.15793 4.41862 4.68872 4.78871 4.87534 4.94243 5.07314 5.08228 5.11385 5.24936 5.31014 5.33442 5.34323 5.38149 5.39514 5.53494 5.56627 5.57148 5.61029 5.61615 5.86120 5.87679 5.95163 6.05518 6.09605 6.14316 6.16279 6.34083 6.38913 6.50389 6.59741 6.65642 6.69150 6.70725 6.72369 6.80396 6.89875 7.04123 7.15197 7.38290 7.71085 7.77251 8.22442 8.32672 8.80573 9.16909 9.79789 10.30051 11.24385 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002999 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.943666 B = 9333.211932 C =11047.442081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.107 3.893 5 N -0.694 5.694 6 C 0.552 3.448 7 O -0.562 6.562 8 C -0.129 4.129 9 C -0.070 4.070 10 C -0.121 4.121 11 C -0.066 4.066 12 C -0.078 4.078 13 C 0.060 3.940 14 N -0.549 5.549 15 C 0.020 3.980 16 C 0.024 3.976 17 C -0.131 4.131 18 C -0.063 4.063 19 N -0.594 5.594 20 C 0.163 3.837 21 C -0.263 4.263 22 H 0.067 0.933 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.900 3.100 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.414 0.586 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.024 0.976 47 H 0.122 0.878 48 H 0.132 0.868 49 H 0.029 0.971 50 H 0.042 0.958 51 H -0.002 1.002 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.165 2.572 -11.117 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.344 5.344 6 C 0.338 3.662 7 O -0.444 6.444 8 C -0.132 4.132 9 C -0.089 4.089 10 C -0.139 4.139 11 C -0.067 4.067 12 C -0.115 4.115 13 C -0.068 4.068 14 N -0.273 5.273 15 C -0.129 4.129 16 C -0.124 4.124 17 C -0.150 4.150 18 C -0.082 4.082 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.392 4.392 22 H 0.085 0.915 23 C -0.192 4.192 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.140 0.860 48 H 0.150 0.850 49 H 0.047 0.953 50 H 0.061 0.939 51 H 0.016 0.984 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.959 2.054 -11.151 16.479 hybrid contribution 0.435 0.575 0.486 0.870 sum 12.394 2.630 -10.665 16.561 Atomic orbital electron populations 1.22170 0.97472 1.01471 1.00643 1.20657 0.92639 0.95867 0.85970 0.91361 1.21961 0.79883 1.01071 0.98985 1.45786 1.08176 1.57731 1.22716 1.18250 0.86940 0.78284 0.82678 1.90691 1.70025 1.49345 1.34306 1.20050 0.93427 1.02935 0.96744 1.21523 0.94465 0.96348 0.96567 1.20995 0.93992 1.00271 0.98667 1.19949 0.95225 0.97154 0.94367 1.20612 0.90245 0.97971 1.02709 1.22144 0.86378 0.98934 0.99339 1.61982 1.06411 1.04576 1.54312 1.22458 1.00784 0.94790 0.94831 1.22380 0.99717 0.91575 0.98743 1.20907 0.93872 1.01844 0.98332 1.21194 0.93650 0.95737 0.97573 1.43937 1.57908 1.09668 1.20188 1.20754 0.93946 0.84489 0.98946 1.19215 1.16156 0.91131 1.12745 0.91489 1.25010 0.97883 0.96120 1.00209 1.70074 1.38837 1.07292 1.38090 0.86342 0.78735 0.78799 0.83150 1.21583 1.21729 1.20523 0.93564 0.92935 0.92426 0.92800 0.92314 0.74745 0.84687 0.85513 0.89862 0.90918 0.94515 0.90364 0.95642 0.91491 0.90938 0.91207 0.91384 0.95691 0.86022 0.85027 0.95286 0.93937 0.98355 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.18 37.16 0.34 -2.26 16 2 C 0.16 3.00 2.87 -67.93 -0.19 2.80 16 3 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 4 C 0.11 2.03 4.97 -4.04 -0.02 2.01 16 5 N -0.69 -13.64 5.34 -61.25 -0.33 -13.96 16 6 C 0.55 10.96 7.77 -12.33 -0.10 10.86 16 7 O -0.56 -12.42 16.35 5.32 0.09 -12.33 16 8 C -0.13 -2.23 5.87 -104.97 -0.62 -2.84 16 9 C -0.07 -1.14 9.54 -39.18 -0.37 -1.52 16 10 C -0.12 -1.69 9.68 -39.64 -0.38 -2.07 16 11 C -0.07 -0.82 5.14 -104.53 -0.54 -1.35 16 12 C -0.08 -0.78 5.26 -27.88 -0.15 -0.92 16 13 C 0.06 0.57 4.94 -3.83 -0.02 0.55 16 14 N -0.55 -4.97 5.02 -251.26 -1.26 -6.23 16 15 C 0.02 0.15 9.32 60.07 0.56 0.71 16 16 C 0.02 0.18 9.57 60.06 0.57 0.76 16 17 C -0.13 -1.66 9.68 -39.64 -0.38 -2.05 16 18 C -0.06 -0.95 9.59 -39.19 -0.38 -1.33 16 19 N -0.59 -13.58 2.29 -173.48 -0.40 -13.98 16 20 C 0.16 3.87 8.11 59.85 0.49 4.36 16 21 C -0.26 -6.54 9.32 -15.06 -0.14 -6.69 16 22 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 23 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 24 N -0.90 -24.27 10.65 55.49 0.59 -23.67 16 25 Si 0.90 20.52 29.57 -169.99 -5.03 15.49 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.19 7.84 -51.93 -0.41 0.79 16 34 H 0.41 8.41 5.93 -40.82 -0.24 8.17 16 35 H 0.14 2.32 6.41 -52.49 -0.34 1.98 16 36 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.07 0.66 6.49 -51.93 -0.34 0.32 16 39 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.08 0.76 8.06 -51.93 -0.42 0.35 16 41 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.07 0.53 6.47 -51.93 -0.34 0.19 16 44 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 48 H 0.13 1.96 7.65 -52.48 -0.40 1.56 16 49 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 50 H 0.04 1.09 7.23 -51.93 -0.38 0.72 16 51 H 0.00 -0.04 6.43 -51.93 -0.33 -0.38 16 52 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 414.45 15.07 6.25 6.25 Total: -1.00 -29.00 414.45 -10.44 -39.45 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.94 Total: 7.89 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.42 Total: 1.10 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -1.39 Total: -57.84 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.00 -10.44 -39.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329549508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.894 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds