Wall clock time and date at job start Tue Mar 31 2020 17:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.47242 * 2 1 4 4 C 1.53001 * 109.46940 * 240.00736 * 2 1 3 5 5 N 1.46501 * 109.47008 * 185.00314 * 4 2 1 6 6 C 1.34778 * 119.99755 * 180.27414 * 5 4 2 7 7 O 1.21552 * 119.99960 * 359.72107 * 6 5 4 8 8 C 1.47847 * 119.99942 * 179.72066 * 6 5 4 9 9 C 1.39580 * 120.14012 * 359.72475 * 8 6 5 10 10 C 1.37963 * 119.84653 * 179.74396 * 9 8 6 11 11 C 1.38355 * 120.14631 * 0.53426 * 10 9 8 12 12 C 1.50702 * 119.85359 * 179.72179 * 11 10 9 13 13 C 1.53001 * 109.46992 * 270.01517 * 12 11 10 14 14 N 1.46897 * 109.47367 * 179.97438 * 13 12 11 15 15 C 1.46905 * 110.99826 * 66.05003 * 14 13 12 16 16 C 1.46896 * 111.00173 * 190.00176 * 14 13 12 17 17 C 1.38364 * 120.29196 * 359.73808 * 11 10 9 18 18 C 1.37952 * 120.14450 * 359.97438 * 17 11 10 19 19 N 1.46497 * 109.47010 * 120.00404 * 2 1 3 20 20 C 1.46503 * 119.99953 * 60.00294 * 19 2 1 21 21 C 1.36939 * 119.99903 * 239.99544 * 19 2 1 22 22 H 1.07995 * 120.00012 * 23.11302 * 21 19 2 23 23 C 1.38811 * 119.99707 * 203.10828 * 21 19 2 24 24 N 1.31614 * 120.00513 * 11.69744 * 23 21 19 25 25 Si 1.86804 * 119.99555 * 191.69384 * 23 21 19 26 26 H 1.48497 * 109.47323 * 90.00526 * 25 23 21 27 27 H 1.48501 * 109.47010 * 210.00153 * 25 23 21 28 28 H 1.48500 * 109.47152 * 330.00142 * 25 23 21 29 29 H 1.09002 * 109.46965 * 59.99256 * 1 2 3 30 30 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46438 * 299.99883 * 1 2 3 32 32 H 1.08991 * 109.47371 * 64.99505 * 4 2 1 33 33 H 1.09006 * 109.46803 * 305.00170 * 4 2 1 34 34 H 0.96998 * 119.99932 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.07544 * 0.02562 * 9 8 6 36 36 H 1.08004 * 119.92665 * 180.27313 * 10 9 8 37 37 H 1.08999 * 109.47013 * 30.01739 * 12 11 10 38 38 H 1.08999 * 109.47003 * 150.01981 * 12 11 10 39 39 H 1.08998 * 109.47211 * 300.00477 * 13 12 11 40 40 H 1.09005 * 109.46523 * 60.00120 * 13 12 11 41 41 H 1.08997 * 109.47391 * 59.99461 * 15 14 13 42 42 H 1.09001 * 109.47090 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.47139 * 300.00283 * 15 14 13 44 44 H 1.09000 * 109.47201 * 60.00278 * 16 14 13 45 45 H 1.08999 * 109.47051 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.47253 * 300.00120 * 16 14 13 47 47 H 1.08003 * 119.92150 * 180.02562 * 17 11 10 48 48 H 1.08006 * 120.06949 * 180.02562 * 18 17 11 49 49 H 1.08994 * 109.47388 * 93.93546 * 20 19 2 50 50 H 1.09005 * 109.46863 * 213.93756 * 20 19 2 51 51 H 1.08994 * 109.46986 * 333.93244 * 20 19 2 52 52 H 0.96994 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1735 -1.4237 -2.1938 7 8 3.5690 -1.8796 -3.1447 8 6 5.6475 -1.5244 -2.1375 9 6 6.3450 -0.9968 -1.0497 10 6 7.7200 -1.0988 -1.0009 11 6 8.4082 -1.7126 -2.0323 12 6 9.9107 -1.8148 -1.9752 13 6 10.5312 -0.5817 -2.6350 14 7 11.9957 -0.6810 -2.5788 15 6 12.4796 -1.7981 -3.4011 16 6 12.6251 0.5827 -2.9848 17 6 7.7232 -2.2326 -3.1162 18 6 6.3478 -2.1425 -3.1745 19 7 2.0184 -0.6907 1.1961 20 6 1.6645 -2.0933 1.4278 21 6 2.8057 -0.0253 2.0975 22 1 2.7709 1.0527 2.1524 23 6 3.6485 -0.7364 2.9406 24 7 3.8670 -2.0164 2.7261 25 14 4.4726 0.1235 4.3797 26 1 3.6010 0.0283 5.5783 27 1 5.7772 -0.5266 4.6636 28 1 4.6947 1.5523 4.0413 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9825 -0.4622 -0.4320 35 1 5.8092 -0.5138 -0.2460 36 1 8.2607 -0.6949 -0.1577 37 1 10.2317 -1.8707 -0.9350 38 1 10.2342 -2.7114 -2.5040 39 1 10.2101 -0.5258 -3.6751 40 1 10.2076 0.3148 -2.1061 41 1 12.1792 -1.6432 -4.4374 42 1 13.5667 -1.8491 -3.3413 43 1 12.0516 -2.7311 -3.0346 44 1 12.3030 1.3805 -2.3155 45 1 13.7092 0.4813 -2.9345 46 1 12.3301 0.8239 -4.0060 47 1 8.2664 -2.7109 -3.9178 48 1 5.8143 -2.5492 -4.0210 49 1 2.4508 -2.7365 1.0327 50 1 1.5553 -2.2684 2.4981 51 1 0.7240 -2.3185 0.9250 52 1 4.4556 -2.5134 3.3155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329549508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:37 Heat of formation + Delta-G solvation = -5.858995 kcal Electronic energy + Delta-G solvation = -28913.962055 eV Core-core repulsion = 25106.231923 eV Total energy + Delta-G solvation = -3807.730132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.22878 -39.80942 -38.48039 -38.16735 -35.42883 -34.31484 -33.63782 -31.92387 -31.13318 -30.05470 -28.44976 -27.99612 -27.30030 -25.70222 -24.87284 -23.63799 -23.20494 -21.87365 -21.13295 -20.90122 -18.91186 -18.75009 -17.35467 -17.09804 -16.87867 -16.45250 -16.26454 -15.96786 -15.86801 -15.63830 -15.62544 -15.38387 -14.69615 -14.58436 -14.54584 -14.19869 -14.06917 -13.90443 -13.69547 -13.57905 -13.24577 -13.16926 -12.84518 -12.83223 -12.68562 -12.61385 -12.47941 -12.45727 -12.27201 -12.18749 -12.11759 -12.06880 -11.73568 -11.65093 -11.47914 -10.98535 -10.59366 -10.06168 -9.96083 -9.65062 -9.30735 -8.75388 -7.75211 -5.25144 -0.15756 0.40929 1.49536 1.53211 1.59441 1.85365 2.34185 2.54200 2.83980 3.03967 3.38090 3.64764 3.75764 3.80144 3.98156 3.99989 4.07028 4.12052 4.21583 4.32260 4.38731 4.41516 4.50328 4.51490 4.60400 4.62883 4.70131 4.71850 4.75263 4.80191 4.84499 4.85849 4.96897 5.02183 5.04015 5.08099 5.09022 5.19348 5.26905 5.30790 5.34452 5.39700 5.46694 5.58553 5.61435 5.71528 5.75964 5.93030 6.06253 6.10712 6.37345 6.64113 7.19856 7.23809 7.90827 8.37329 9.25880 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002999 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.943666 B = 9333.211932 C =11047.442081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.074 0.926 4 C 0.112 3.888 5 N -0.697 5.697 6 C 0.547 3.453 7 O -0.592 6.592 8 C -0.155 4.155 9 C -0.082 4.082 10 C -0.125 4.125 11 C -0.052 4.052 12 C -0.071 4.071 13 C 0.064 3.936 14 N -0.562 5.562 15 C 0.018 3.982 16 C 0.023 3.977 17 C -0.121 4.121 18 C -0.069 4.069 19 N -0.602 5.602 20 C 0.182 3.818 21 C -0.261 4.261 22 H 0.073 0.927 23 C -0.039 4.039 24 N -0.926 5.926 25 Si 0.957 3.043 26 H -0.296 1.296 27 H -0.298 1.298 28 H -0.267 1.267 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.410 0.590 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.027 0.973 47 H 0.156 0.844 48 H 0.131 0.869 49 H -0.002 1.002 50 H 0.016 0.984 51 H 0.022 0.978 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.610 3.405 -12.018 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.014 4.014 5 N -0.346 5.346 6 C 0.336 3.664 7 O -0.475 6.475 8 C -0.158 4.158 9 C -0.101 4.101 10 C -0.143 4.143 11 C -0.053 4.053 12 C -0.109 4.109 13 C -0.064 4.064 14 N -0.286 5.286 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.139 4.139 18 C -0.088 4.088 19 N -0.325 5.325 20 C 0.037 3.963 21 C -0.391 4.391 22 H 0.090 0.910 23 C -0.235 4.235 24 N -0.572 5.572 25 Si 0.786 3.214 26 H -0.223 1.223 27 H -0.225 1.225 28 H -0.192 1.192 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.248 0.752 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.045 0.955 47 H 0.173 0.827 48 H 0.149 0.851 49 H 0.016 0.984 50 H 0.034 0.966 51 H 0.040 0.960 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.389 2.924 -12.066 18.259 hybrid contribution 0.031 0.336 0.712 0.788 sum 13.420 3.261 -11.354 17.878 Atomic orbital electron populations 1.22057 0.94932 1.01678 1.02105 1.20850 0.94375 0.95523 0.84349 0.90804 1.21932 0.79582 1.00304 0.99587 1.45865 1.08490 1.57694 1.22559 1.18702 0.88176 0.77484 0.82078 1.90652 1.70919 1.50686 1.35276 1.19977 0.92028 1.05410 0.98392 1.21418 0.95517 0.97096 0.96021 1.21197 0.93059 1.00310 0.99729 1.20234 0.96630 0.95131 0.93274 1.20604 0.88134 0.99035 1.03102 1.22048 0.86951 0.98239 0.99150 1.61986 1.05999 1.05533 1.55104 1.22511 1.01393 0.94334 0.94768 1.22417 1.00262 0.91020 0.98797 1.21236 0.92798 1.00812 0.99068 1.21314 0.94854 0.95634 0.96971 1.44063 1.57779 1.09303 1.21358 1.20407 0.93934 0.84800 0.97141 1.19485 1.15500 0.91447 1.12673 0.90953 1.25606 0.98901 0.96621 1.02369 1.70238 1.39741 1.08504 1.38748 0.85431 0.77229 0.78452 0.80252 1.22326 1.22488 1.19193 0.90450 0.93332 0.92607 0.91073 0.93976 0.75217 0.86460 0.84142 0.89909 0.89287 0.94423 0.90962 0.95336 0.90631 0.90649 0.91319 0.90372 0.95464 0.82675 0.85118 0.98379 0.96567 0.95998 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.18 71.98 0.66 -3.95 16 2 C 0.16 5.83 2.87 44.99 0.13 5.96 16 3 H 0.07 2.68 7.87 -2.38 -0.02 2.66 16 4 C 0.11 4.23 4.97 86.38 0.43 4.66 16 5 N -0.70 -28.11 5.34 -465.97 -2.49 -30.60 16 6 C 0.55 22.39 7.77 86.79 0.67 23.06 16 7 O -0.59 -26.76 16.35 -3.88 -0.06 -26.83 16 8 C -0.16 -5.49 5.87 -20.09 -0.12 -5.61 16 9 C -0.08 -2.71 9.54 22.53 0.21 -2.50 16 10 C -0.13 -3.39 9.68 22.23 0.22 -3.17 16 11 C -0.05 -1.18 5.14 -19.81 -0.10 -1.28 16 12 C -0.07 -1.23 5.26 29.85 0.16 -1.07 16 13 C 0.06 1.06 4.94 86.30 0.43 1.49 16 14 N -0.56 -8.84 5.02 -948.84 -4.76 -13.60 16 15 C 0.02 0.22 9.32 127.69 1.19 1.41 16 16 C 0.02 0.30 9.57 127.69 1.22 1.52 16 17 C -0.12 -2.81 9.68 22.23 0.22 -2.59 16 18 C -0.07 -2.06 9.59 22.52 0.22 -1.84 16 19 N -0.60 -27.62 2.29 -702.77 -1.61 -29.23 16 20 C 0.18 8.83 8.11 127.77 1.04 9.87 16 21 C -0.26 -13.00 9.32 84.03 0.78 -12.22 16 22 H 0.07 3.49 7.82 -2.91 -0.02 3.47 16 23 C -0.04 -2.00 5.12 84.86 0.43 -1.57 16 24 N -0.93 -51.43 10.65 21.65 0.23 -51.20 16 25 Si 0.96 42.53 29.57 68.60 2.03 44.56 16 26 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.54 6.66 -2.39 -0.02 1.52 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.73 7.84 -2.38 -0.02 1.71 16 34 H 0.41 17.24 5.93 -92.71 -0.55 16.69 16 35 H 0.12 4.24 6.41 -2.91 -0.02 4.23 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.09 1.29 6.49 -2.39 -0.02 1.28 16 39 H 0.04 0.62 8.12 -2.39 -0.02 0.60 16 40 H 0.07 1.28 8.06 -2.38 -0.02 1.26 16 41 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.07 0.88 6.47 -2.39 -0.02 0.86 16 44 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 45 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 46 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 48 H 0.13 3.88 7.65 -2.91 -0.02 3.86 16 49 H 0.00 -0.11 7.41 -2.39 -0.02 -0.13 16 50 H 0.02 0.83 7.23 -2.38 -0.02 0.82 16 51 H 0.02 0.93 6.43 -2.39 -0.02 0.92 16 52 H 0.24 13.53 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -63.15 414.45 1.47 -61.68 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.34 Total: 33.04 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 7.78 Total: 12.17 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -8.63 Total: -124.62 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.15 1.47 -61.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329549508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.821 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds