Wall clock time and date at job start Tue Mar 31 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47249 * 2 1 4 4 C 1.46896 * 110.99917 * 71.37745 * 3 2 1 5 5 C 1.46905 * 110.99795 * 195.32692 * 3 2 1 6 6 H 1.08998 * 109.47167 * 294.14372 * 5 3 2 7 7 C 1.50700 * 109.46466 * 174.14718 * 5 3 2 8 8 O 1.21272 * 120.00722 * 340.00169 * 7 5 3 9 9 N 1.34777 * 119.99549 * 160.00128 * 7 5 3 10 10 C 1.46498 * 120.00180 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.47224 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47001 * 294.99031 * 11 10 9 13 13 C 1.53001 * 109.46902 * 174.99936 * 11 10 9 14 14 N 1.46495 * 109.47532 * 54.99969 * 11 10 9 15 15 C 1.46500 * 120.00269 * 59.99778 * 14 11 10 16 16 C 1.36941 * 119.99866 * 240.00154 * 14 11 10 17 17 H 1.08009 * 119.99792 * 25.60671 * 16 14 11 18 18 C 1.38803 * 120.00091 * 205.60240 * 16 14 11 19 19 N 1.31626 * 120.00065 * 9.55752 * 18 16 14 20 20 Si 1.86804 * 119.99972 * 189.55427 * 18 16 14 21 21 H 1.48498 * 109.47196 * 60.00344 * 20 18 16 22 22 H 1.48512 * 109.46718 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47294 * 300.00034 * 20 18 16 24 24 C 1.50700 * 109.46874 * 54.14848 * 5 3 2 25 25 C 1.38231 * 119.99808 * 47.16978 * 24 5 3 26 26 C 1.38243 * 119.99925 * 179.80467 * 25 24 5 27 27 C 1.38236 * 119.99436 * 0.39941 * 26 25 24 28 28 C 1.38232 * 120.00236 * 359.85186 * 27 26 25 29 29 C 1.38227 * 119.99973 * 359.96064 * 28 27 26 30 30 H 1.08997 * 109.47053 * 63.96913 * 1 2 3 31 31 H 1.08998 * 109.46988 * 183.97229 * 1 2 3 32 32 H 1.09001 * 109.46730 * 303.96818 * 1 2 3 33 33 H 1.09001 * 109.46963 * 239.99794 * 2 1 3 34 34 H 1.09002 * 109.46998 * 119.99872 * 2 1 3 35 35 H 1.09003 * 109.47379 * 180.02562 * 4 3 2 36 36 H 1.09012 * 109.47167 * 299.99621 * 4 3 2 37 37 H 1.08997 * 109.47694 * 59.99426 * 4 3 2 38 38 H 0.97003 * 120.00076 * 0.02562 * 9 7 5 39 39 H 1.08997 * 109.47545 * 59.99612 * 10 9 7 40 40 H 1.09004 * 109.47062 * 299.99888 * 10 9 7 41 41 H 1.09004 * 109.47690 * 59.99503 * 13 11 10 42 42 H 1.08999 * 109.47310 * 179.97438 * 13 11 10 43 43 H 1.08998 * 109.47259 * 299.99430 * 13 11 10 44 44 H 1.09001 * 109.46972 * 85.72301 * 15 14 11 45 45 H 1.08999 * 109.46911 * 205.72089 * 15 14 11 46 46 H 1.08996 * 109.47152 * 325.72036 * 15 14 11 47 47 H 0.96999 * 119.99680 * 180.02562 * 19 18 16 48 48 H 1.08001 * 120.00734 * 359.97438 * 25 24 5 49 49 H 1.07993 * 120.00378 * 180.23139 * 26 25 24 50 50 H 1.08002 * 119.99614 * 179.83120 * 27 26 25 51 51 H 1.08001 * 119.99909 * 179.97438 * 28 27 26 52 52 H 1.08002 * 119.99917 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7823 2.0273 1.2996 5 6 3.4423 1.4403 -0.3625 6 1 4.0339 0.9530 0.4124 7 6 3.8718 2.8790 -0.4923 8 8 3.0420 3.7465 -0.6643 9 7 5.1782 3.2015 -0.4172 10 6 5.5959 4.6001 -0.5428 11 6 7.1185 4.6904 -0.4229 12 1 7.4227 4.3876 0.5791 13 6 7.5656 6.1313 -0.6779 14 7 7.7396 3.8044 -1.4105 15 6 7.4845 4.0066 -2.8389 16 6 8.5586 2.7872 -0.9985 17 1 8.4412 2.3656 -0.0110 18 6 9.5396 2.2979 -1.8499 19 7 9.8099 2.9279 -2.9735 20 14 10.4763 0.7453 -1.4010 21 1 9.5236 -0.3855 -1.2641 22 1 11.4622 0.4362 -2.4678 23 1 11.1883 0.9512 -0.1143 24 6 3.6538 0.7324 -1.6760 25 6 2.8168 0.9937 -2.7446 26 6 3.0133 0.3473 -3.9507 27 6 4.0418 -0.5664 -4.0855 28 6 4.8755 -0.8315 -3.0153 29 6 4.6814 -0.1823 -1.8105 30 1 -0.3633 0.4510 -0.9234 31 1 -0.3633 -1.0252 0.0712 32 1 -0.3633 0.5742 0.8523 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1539 3.0516 1.2720 36 1 0.7130 2.0347 1.5113 37 1 2.3033 1.4723 2.0798 38 1 5.8420 2.5076 -0.2800 39 1 5.1331 5.1900 0.2484 40 1 5.2847 4.9865 -1.5134 41 1 7.1034 6.7906 0.0569 42 1 8.6502 6.1958 -0.5920 43 1 7.2615 6.4341 -1.6798 44 1 8.1839 4.7445 -3.2320 45 1 7.6160 3.0630 -3.3685 46 1 6.4639 4.3626 -2.9789 47 1 10.4952 2.5857 -3.5687 48 1 2.0109 1.7049 -2.6382 49 1 2.3617 0.5542 -4.7867 50 1 4.1936 -1.0735 -5.0269 51 1 5.6788 -1.5458 -3.1205 52 1 5.3326 -0.3898 -0.9742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329591488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:49 Heat of formation + Delta-G solvation = 22.880542 kcal Electronic energy + Delta-G solvation = -30680.066416 eV Core-core repulsion = 26873.582524 eV Total energy + Delta-G solvation = -3806.483892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.29657 -38.56252 -37.23930 -36.40649 -33.72559 -32.47655 -31.73754 -30.70825 -30.46526 -29.33438 -27.31445 -26.00754 -25.98404 -24.45616 -23.00181 -22.47542 -21.87001 -20.87984 -19.69536 -19.13348 -17.10574 -16.86960 -16.59253 -16.23419 -15.62186 -15.29026 -15.06882 -14.69927 -14.49615 -14.32197 -14.09668 -13.84580 -13.32461 -13.22223 -12.98587 -12.81170 -12.67882 -12.55873 -12.41246 -12.17315 -12.13433 -11.88955 -11.85681 -11.48059 -11.39671 -11.06431 -11.03814 -10.88251 -10.82484 -10.76215 -10.75316 -10.41355 -10.26769 -9.92948 -9.79687 -9.55630 -8.72371 -8.56945 -8.53429 -8.43484 -8.32654 -6.76247 -5.78280 -3.25745 1.42773 1.60386 3.03306 3.32286 3.37633 3.39344 3.39523 3.85050 4.23184 4.43052 4.73915 4.95012 4.97305 5.12266 5.17451 5.19931 5.29941 5.31919 5.36159 5.43129 5.43817 5.46472 5.51971 5.62533 5.67059 5.73155 5.78824 5.88906 5.94883 5.98921 6.07789 6.11740 6.16770 6.21404 6.23480 6.34925 6.45769 6.60738 6.66971 6.68733 6.79323 6.89523 6.91977 6.94743 7.03556 7.09358 7.15592 7.40932 7.67496 7.77594 8.08616 8.37931 8.70355 9.19746 9.82079 10.33613 11.27620 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.004503 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.229837 B = 6216.199717 C = 7511.356516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.514 5.514 4 C 0.021 3.979 5 C 0.111 3.889 6 H 0.064 0.936 7 C 0.519 3.481 8 O -0.535 6.535 9 N -0.704 5.704 10 C 0.109 3.891 11 C 0.157 3.843 12 H 0.067 0.933 13 C -0.155 4.155 14 N -0.591 5.591 15 C 0.167 3.833 16 C -0.260 4.260 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.081 4.081 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.115 4.115 28 C -0.117 4.117 29 C -0.101 4.101 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.015 0.985 45 H 0.055 0.945 46 H -0.007 1.007 47 H 0.253 0.747 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -6.184 4.240 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.239 5.239 4 C -0.127 4.127 5 C -0.001 4.001 6 H 0.082 0.918 7 C 0.303 3.697 8 O -0.412 6.412 9 N -0.355 5.355 10 C -0.017 4.017 11 C 0.049 3.951 12 H 0.085 0.915 13 C -0.215 4.215 14 N -0.314 5.314 15 C 0.022 3.978 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.082 4.082 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.133 4.133 28 C -0.135 4.135 29 C -0.120 4.120 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.244 0.756 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.012 0.988 47 H 0.063 0.937 48 H 0.148 0.852 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.098 -5.330 3.620 16.415 hybrid contribution 1.628 -1.526 0.730 2.348 sum -13.469 -6.856 4.350 15.727 Atomic orbital electron populations 1.21740 0.94728 1.01079 1.02582 1.22178 0.96205 0.88489 1.01183 1.61707 1.14419 1.17063 1.30665 1.22497 1.01884 1.00327 0.87987 1.20444 0.90315 0.93912 0.95391 0.91813 1.20062 0.82832 0.89655 0.77191 1.90644 1.51802 1.49845 1.48897 1.45870 1.06992 1.10558 1.72045 1.21910 0.97611 0.81358 1.00814 1.20622 0.89190 0.90856 0.94476 0.91515 1.22162 1.01693 0.97094 1.00576 1.43909 1.53965 1.32366 1.01128 1.20680 0.92787 1.00284 0.84002 1.19096 1.09803 1.09449 1.00652 0.91742 1.25054 0.97012 0.99159 0.97775 1.70044 1.33333 1.39024 1.12224 0.86412 0.79681 0.83376 0.77459 1.21027 1.21670 1.21012 1.19275 0.97037 0.97679 0.94229 1.21037 0.98760 0.98498 0.91859 1.21127 0.98543 0.97409 0.97433 1.21156 0.95444 0.98169 0.98543 1.21064 0.99180 1.00249 0.93020 1.21036 0.96726 0.95916 0.98315 0.91881 0.92553 0.92719 0.90144 0.95025 0.90251 0.91014 0.96053 0.75620 0.92641 0.92182 0.94065 0.92258 0.93192 0.96668 0.92621 0.98835 0.93660 0.85246 0.86263 0.86345 0.86028 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 10.02 37.16 0.37 -0.98 16 2 C 0.05 0.52 5.37 -3.82 -0.02 0.50 16 3 N -0.51 -6.81 3.85 -237.68 -0.91 -7.72 16 4 C 0.02 0.26 9.04 60.06 0.54 0.80 16 5 C 0.11 1.60 2.08 -70.01 -0.15 1.46 16 6 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 7 C 0.52 8.93 6.11 -10.99 -0.07 8.86 16 8 O -0.53 -10.59 15.19 5.56 0.08 -10.50 16 9 N -0.70 -12.32 5.39 -60.30 -0.32 -12.65 16 10 C 0.11 1.96 4.90 -4.04 -0.02 1.94 16 11 C 0.16 3.03 2.87 -67.93 -0.20 2.84 16 12 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 13 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 14 N -0.59 -13.69 2.28 -173.49 -0.40 -14.08 16 15 C 0.17 4.04 8.07 59.85 0.48 4.53 16 16 C -0.26 -6.56 9.29 -15.06 -0.14 -6.70 16 17 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 18 C 0.01 0.24 5.10 -17.43 -0.09 0.15 16 19 N -0.90 -25.34 10.74 55.49 0.60 -24.74 16 20 Si 0.90 20.74 29.56 -169.99 -5.03 15.72 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.08 -1.19 3.26 -104.63 -0.34 -1.53 16 25 C -0.08 -1.21 8.53 -39.58 -0.34 -1.55 16 26 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 27 C -0.11 -1.49 10.05 -39.58 -0.40 -1.88 16 28 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 29 C -0.10 -1.45 9.67 -39.59 -0.38 -1.84 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.50 6.60 -51.93 -0.34 0.16 16 33 H 0.08 0.95 5.98 -51.93 -0.31 0.64 16 34 H 0.03 0.33 8.04 -51.93 -0.42 -0.09 16 35 H 0.08 1.14 6.18 -51.93 -0.32 0.82 16 36 H 0.07 0.77 6.60 -51.92 -0.34 0.43 16 37 H 0.02 0.24 8.11 -51.93 -0.42 -0.19 16 38 H 0.41 7.28 7.89 -40.82 -0.32 6.96 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.18 6.91 -51.93 -0.36 0.82 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.91 7.67 -51.93 -0.40 0.52 16 44 H 0.01 0.39 7.82 -51.93 -0.41 -0.01 16 45 H 0.06 1.48 6.78 -51.93 -0.35 1.13 16 46 H -0.01 -0.15 6.55 -51.93 -0.34 -0.49 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.13 1.97 7.94 -52.49 -0.42 1.56 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 51 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 52 H 0.12 1.62 7.99 -52.49 -0.42 1.21 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -29.33 409.87 -9.91 -39.24 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.92 Total: 8.49 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.19 Total: 0.07 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.04 Total: -59.20 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.33 -9.91 -39.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329591488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.122 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds