Wall clock time and date at job start Tue Mar 31 2020 17:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47694 * 2 1 4 4 C 1.53004 * 109.47056 * 119.99821 * 2 1 3 5 5 N 1.46507 * 109.47254 * 174.99943 * 4 2 1 6 6 C 1.46502 * 120.00096 * 270.00421 * 5 4 2 7 7 C 1.34775 * 120.00032 * 89.99469 * 5 4 2 8 8 O 1.21556 * 119.99897 * 4.54860 * 7 5 4 9 9 C 1.47837 * 120.00054 * 184.54085 * 7 5 4 10 10 C 1.39596 * 120.14497 * 310.47306 * 9 7 5 11 11 C 1.37938 * 119.85216 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.14650 * 359.97438 * 11 10 9 13 13 C 1.38335 * 120.29213 * 0.02562 * 12 11 10 14 14 C 1.37974 * 120.14664 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.07627 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46728 * 266.91258 * 15 14 13 17 17 N 1.46903 * 109.46908 * 180.02562 * 16 15 14 18 18 C 1.46905 * 110.99794 * 170.00114 * 17 16 15 19 19 C 1.46896 * 110.99668 * 293.94925 * 17 16 15 20 20 N 1.46496 * 109.47161 * 239.99596 * 2 1 3 21 21 C 1.36938 * 120.00029 * 85.00206 * 20 2 1 22 22 H 1.08000 * 119.99563 * 359.97438 * 21 20 2 23 23 C 1.38815 * 120.00091 * 180.02562 * 21 20 2 24 24 N 1.31621 * 119.99824 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00256 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46984 * 90.00250 * 25 23 21 27 27 H 1.48501 * 109.47222 * 210.00580 * 25 23 21 28 28 H 1.48506 * 109.47171 * 330.00227 * 25 23 21 29 29 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47224 * 300.00034 * 1 2 3 31 31 H 1.08996 * 109.47524 * 60.00633 * 1 2 3 32 32 H 1.09003 * 109.47383 * 55.00239 * 4 2 1 33 33 H 1.08994 * 109.47146 * 294.99898 * 4 2 1 34 34 H 1.09001 * 109.46326 * 264.31257 * 6 5 4 35 35 H 1.09003 * 109.46985 * 24.30354 * 6 5 4 36 36 H 1.08996 * 109.47472 * 144.31093 * 6 5 4 37 37 H 1.07997 * 120.07642 * 359.95135 * 10 9 7 38 38 H 1.08001 * 119.92630 * 179.72860 * 11 10 9 39 39 H 1.08000 * 119.85660 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.92831 * 179.97438 * 13 12 11 41 41 H 1.08996 * 109.47234 * 26.90776 * 15 14 13 42 42 H 1.08999 * 109.46839 * 146.91433 * 15 14 13 43 43 H 1.09010 * 109.46960 * 299.99599 * 16 15 14 44 44 H 1.08999 * 109.47125 * 59.99707 * 16 15 14 45 45 H 1.08994 * 109.47358 * 59.99527 * 18 17 16 46 46 H 1.08997 * 109.46630 * 180.02562 * 18 17 16 47 47 H 1.09001 * 109.46922 * 299.99231 * 18 17 16 48 48 H 1.09006 * 109.47316 * 60.00138 * 19 17 16 49 49 H 1.08997 * 109.47151 * 180.02562 * 19 17 16 50 50 H 1.09005 * 109.47537 * 300.00340 * 19 17 16 51 51 H 0.97005 * 120.00237 * 264.99848 * 20 2 1 52 52 H 0.96995 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1258 -1.9920 0.5613 7 6 4.2676 0.1492 1.7156 8 8 3.7512 1.0751 2.3102 9 6 5.7375 0.0932 1.5683 10 6 6.4300 -1.0763 1.8871 11 6 7.8014 -1.1220 1.7468 12 6 8.4908 -0.0122 1.2908 13 6 7.8107 1.1498 0.9732 14 6 6.4390 1.2092 1.1099 15 6 5.6997 2.4761 0.7639 16 6 5.5375 3.3316 2.0220 17 7 4.8164 4.5662 1.6849 18 6 4.4335 5.3003 2.8985 19 6 5.6132 5.4128 0.7871 20 7 2.0183 -0.6907 -1.1961 21 6 2.1491 -0.0076 -2.3757 22 1 1.8919 1.0402 -2.4243 23 6 2.6113 -0.6622 -3.5092 24 7 2.7375 -0.0055 -4.6429 25 14 3.0555 -2.4746 -3.4253 26 1 1.8581 -3.2930 -3.7442 27 1 4.1306 -2.7668 -4.4072 28 1 3.5311 -2.8050 -2.0578 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 4.3742 -2.7280 1.3259 35 1 3.4337 -2.4329 -0.1561 36 1 5.0350 -1.6823 0.0460 37 1 5.8932 -1.9431 2.2430 38 1 8.3388 -2.0247 1.9973 39 1 9.5646 -0.0531 1.1832 40 1 8.3547 2.0126 0.6182 41 1 6.2638 3.0333 0.0160 42 1 4.7165 2.2257 0.3655 43 1 4.9733 2.7744 2.7700 44 1 6.5207 3.5818 2.4205 45 1 5.3287 5.5613 3.4629 46 1 3.9009 6.2096 2.6202 47 1 3.7863 4.6742 3.5128 48 1 5.8238 4.8686 -0.1337 49 1 5.0562 6.3202 0.5539 50 1 6.5512 5.6780 1.2750 51 1 2.2490 -1.6319 -1.1525 52 1 3.0601 -0.4630 -5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331515732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:31 Heat of formation + Delta-G solvation = 20.481364 kcal Electronic energy + Delta-G solvation = -30627.690931 eV Core-core repulsion = 26821.103003 eV Total energy + Delta-G solvation = -3806.587928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43402 -38.46253 -37.35625 -36.38851 -34.39905 -32.98806 -32.16526 -31.05321 -29.44044 -28.82464 -27.49745 -26.96596 -25.92240 -24.51615 -23.53482 -22.80735 -21.78289 -20.76079 -20.10255 -19.17881 -17.62416 -17.18964 -16.30377 -16.01265 -15.74572 -15.28455 -15.08676 -14.84786 -14.64499 -14.55845 -14.20370 -13.85668 -13.60896 -13.14741 -13.07480 -12.91829 -12.72760 -12.59818 -12.45447 -12.30474 -12.27982 -11.90298 -11.77134 -11.68960 -11.56185 -11.50172 -11.43052 -11.34776 -10.95810 -10.85312 -10.64277 -10.54502 -10.47442 -10.03425 -9.57081 -9.45404 -8.92677 -8.88688 -8.71490 -8.24972 -8.20775 -7.21912 -5.72876 -3.07372 1.05905 1.33992 2.94041 3.26508 3.32252 3.36357 3.43454 3.79087 4.08249 4.59016 4.62903 4.82210 4.87044 4.95228 5.18613 5.22481 5.24154 5.28136 5.38047 5.40642 5.42098 5.46945 5.51144 5.56889 5.62145 5.65528 5.68453 5.72958 5.74209 5.85432 5.91062 5.93979 5.99443 6.04906 6.10374 6.20338 6.24314 6.25238 6.30810 6.38632 6.41177 6.50794 6.63039 6.75482 6.85074 6.89448 7.10233 7.16267 7.18537 7.65928 8.04873 8.45075 8.46289 9.24121 9.96110 10.16100 11.45929 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.004721 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.673585 B = 5929.760499 C = 6754.171520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 H 0.061 0.939 4 C 0.108 3.892 5 N -0.592 5.592 6 C 0.077 3.923 7 C 0.562 3.438 8 O -0.529 6.529 9 C -0.116 4.116 10 C -0.090 4.090 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.123 4.123 14 C -0.027 4.027 15 C -0.080 4.080 16 C 0.066 3.934 17 N -0.542 5.542 18 C 0.029 3.971 19 C 0.020 3.980 20 N -0.744 5.744 21 C -0.232 4.232 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.878 3.122 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.274 1.274 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.022 0.978 45 H 0.019 0.981 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.020 0.980 51 H 0.357 0.643 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 0.674 16.422 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.015 4.015 5 N -0.323 5.323 6 C -0.067 4.067 7 C 0.350 3.650 8 O -0.407 6.407 9 C -0.119 4.119 10 C -0.109 4.109 11 C -0.150 4.150 12 C -0.120 4.120 13 C -0.141 4.141 14 C -0.028 4.028 15 C -0.117 4.117 16 C -0.062 4.062 17 N -0.265 5.265 18 C -0.119 4.119 19 C -0.128 4.128 20 N -0.388 5.388 21 C -0.362 4.362 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.584 5.584 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.201 1.201 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.038 0.962 51 H 0.190 0.810 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.827 1.210 16.310 18.584 hybrid contribution 1.178 -1.279 -0.001 1.739 sum 10.005 -0.069 16.308 19.133 Atomic orbital electron populations 1.22331 0.98295 1.00768 1.00842 1.20623 0.92121 0.96601 0.85608 0.92103 1.21920 0.78515 1.01218 0.99890 1.47504 1.06689 1.21106 1.56984 1.22110 0.99918 0.87379 0.97244 1.18224 0.86257 0.81776 0.78758 1.90725 1.74475 1.33255 1.42205 1.19839 0.93514 0.94814 1.03746 1.21344 0.94580 0.96547 0.98417 1.21024 0.93978 0.98780 1.01255 1.21241 0.99883 0.93045 0.97829 1.20993 0.93336 0.98473 1.01310 1.19859 0.93360 0.94399 0.95231 1.20624 1.01402 0.92045 0.97678 1.22181 0.95937 0.90359 0.97686 1.61866 1.43101 1.05743 1.15793 1.22329 0.99368 0.98588 0.91637 1.22459 0.95362 0.97501 0.97462 1.42800 1.79755 1.09111 1.07160 1.19071 1.36163 0.95560 0.85401 0.89319 1.24638 1.01828 0.97168 0.95625 1.69698 1.53149 1.35315 1.00219 0.86712 0.78080 0.87341 0.76902 1.21348 1.21935 1.20085 0.93669 0.93957 0.92085 0.91074 0.89525 0.93303 0.90167 0.90910 0.85481 0.85765 0.85907 0.85715 0.91186 0.89123 0.88370 0.95952 0.96279 0.91638 0.91179 0.90993 0.91608 0.96183 0.80954 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.15 0.35 -2.49 16 2 C 0.16 3.14 3.20 -67.93 -0.22 2.92 16 3 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 4 C 0.11 1.74 5.06 -4.04 -0.02 1.72 16 5 N -0.59 -9.72 2.73 -182.69 -0.50 -10.22 16 6 C 0.08 1.15 8.60 59.85 0.51 1.66 16 7 C 0.56 9.64 6.31 -12.33 -0.08 9.56 16 8 O -0.53 -10.03 13.19 5.32 0.07 -9.96 16 9 C -0.12 -1.77 4.87 -104.97 -0.51 -2.28 16 10 C -0.09 -1.13 7.81 -39.18 -0.31 -1.44 16 11 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 12 C -0.10 -1.10 10.04 -39.49 -0.40 -1.50 16 13 C -0.12 -1.52 9.68 -39.64 -0.38 -1.90 16 14 C -0.03 -0.40 5.16 -104.22 -0.54 -0.94 16 15 C -0.08 -1.25 4.56 -27.88 -0.13 -1.38 16 16 C 0.07 0.96 4.70 -3.82 -0.02 0.95 16 17 N -0.54 -7.79 5.02 -251.25 -1.26 -9.05 16 18 C 0.03 0.35 9.57 60.07 0.57 0.93 16 19 C 0.02 0.25 9.32 60.06 0.56 0.81 16 20 N -0.74 -16.99 4.37 -53.43 -0.23 -17.22 16 21 C -0.23 -6.45 10.41 -15.06 -0.16 -6.60 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 24 N -0.94 -29.31 13.97 55.49 0.78 -28.53 16 25 Si 0.88 21.39 27.73 -169.99 -4.71 16.68 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.27 -5.91 5.06 56.52 0.29 -5.62 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.09 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.05 0.56 7.05 -51.93 -0.37 0.20 16 35 H 0.08 1.32 4.27 -51.93 -0.22 1.10 16 36 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 37 H 0.13 1.38 6.34 -52.49 -0.33 1.04 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.07 1.01 6.48 -51.93 -0.34 0.68 16 42 H 0.09 1.76 6.93 -51.93 -0.36 1.40 16 43 H 0.10 1.62 5.91 -51.92 -0.31 1.31 16 44 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 45 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 48 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 49 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 50 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.36 7.81 3.50 -40.82 -0.14 7.67 16 52 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 401.13 15.07 6.05 6.05 Total: -1.00 -32.71 401.13 -9.76 -42.47 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.70 Total: 11.63 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.24 Total: -1.83 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -1.22 Total: -65.02 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.71 -9.76 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331515732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.952 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds