Wall clock time and date at job start Tue Mar 31 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99776 * 2 1 3 5 5 N 1.46501 * 109.47125 * 184.99965 * 4 2 1 6 6 C 1.46498 * 119.99785 * 269.99701 * 5 4 2 7 7 C 1.34781 * 120.00143 * 89.99959 * 5 4 2 8 8 O 1.21553 * 119.99647 * 5.86146 * 7 5 4 9 9 C 1.47842 * 119.99866 * 185.86283 * 7 5 4 10 10 C 1.39607 * 120.14481 * 55.21945 * 9 7 5 11 11 C 1.37933 * 119.84965 * 180.29471 * 10 9 7 12 12 C 1.38382 * 120.14963 * 359.67885 * 11 10 9 13 13 C 1.38344 * 120.29026 * 0.02562 * 12 11 10 14 14 C 1.37976 * 120.14323 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.07272 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46711 * 261.24758 * 15 14 13 17 17 N 1.46905 * 109.46718 * 180.02562 * 16 15 14 18 18 C 1.46894 * 111.00104 * 66.04525 * 17 16 15 19 19 C 1.46898 * 110.99633 * 189.99894 * 17 16 15 20 20 N 1.46507 * 109.47218 * 119.99311 * 2 1 3 21 21 C 1.36930 * 120.00153 * 275.00499 * 20 2 1 22 22 H 1.08005 * 119.99935 * 359.97438 * 21 20 2 23 23 C 1.38816 * 120.00266 * 179.97438 * 21 20 2 24 24 N 1.31623 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00340 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47378 * 89.99793 * 25 23 21 27 27 H 1.48500 * 109.46957 * 210.00331 * 25 23 21 28 28 H 1.48506 * 109.47117 * 329.99629 * 25 23 21 29 29 H 1.08999 * 109.47563 * 299.99916 * 1 2 3 30 30 H 1.09000 * 109.47158 * 60.00915 * 1 2 3 31 31 H 1.09003 * 109.46466 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47283 * 64.99663 * 4 2 1 33 33 H 1.09004 * 109.46880 * 304.99478 * 4 2 1 34 34 H 1.09000 * 109.47255 * 264.63212 * 6 5 4 35 35 H 1.08995 * 109.47297 * 24.63716 * 6 5 4 36 36 H 1.09006 * 109.46869 * 144.63134 * 6 5 4 37 37 H 1.07998 * 120.07300 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.92511 * 179.69528 * 11 10 9 39 39 H 1.07998 * 119.85909 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.92843 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47081 * 21.24245 * 15 14 13 42 42 H 1.09001 * 109.47333 * 141.24676 * 15 14 13 43 43 H 1.09001 * 109.46930 * 299.99580 * 16 15 14 44 44 H 1.09001 * 109.47289 * 59.99891 * 16 15 14 45 45 H 1.08994 * 109.47291 * 60.00208 * 18 17 16 46 46 H 1.09007 * 109.47187 * 179.97438 * 18 17 16 47 47 H 1.08998 * 109.47172 * 299.99416 * 18 17 16 48 48 H 1.09003 * 109.47340 * 59.99697 * 19 17 16 49 49 H 1.09003 * 109.46860 * 179.97438 * 19 17 16 50 50 H 1.08997 * 109.47316 * 299.99868 * 19 17 16 51 51 H 0.96997 * 119.99671 * 95.00249 * 20 2 1 52 52 H 0.96992 * 120.00110 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.3343 0.2341 -1.7612 7 6 4.0759 -1.8986 -0.6113 8 8 3.3887 -2.8274 -0.2335 9 6 5.5431 -1.9450 -0.4356 10 6 6.2009 -0.9168 0.2419 11 6 7.5707 -0.9633 0.3970 12 6 8.2920 -2.0292 -0.1113 13 6 7.6455 -3.0544 -0.7784 14 6 6.2759 -3.0197 -0.9414 15 6 5.5732 -4.1376 -1.6679 16 6 5.3073 -3.7175 -3.1149 17 7 4.6218 -4.8070 -3.8228 18 6 3.2787 -5.0302 -3.2713 19 6 4.5605 -4.5403 -5.2661 20 7 2.0184 -0.6905 1.1963 21 6 2.1491 -0.0073 2.3758 22 1 1.8925 1.0407 2.4241 23 6 2.6113 -0.6617 3.5094 24 7 2.9235 -1.9390 3.4507 25 14 2.7890 0.2701 5.1186 26 1 1.5209 0.1789 5.8861 27 1 3.8933 -0.3231 5.9147 28 1 3.0940 1.6954 4.8342 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6055 -1.7199 -1.2950 34 1 4.6215 -0.0368 -2.7772 35 1 3.7729 1.1681 -1.7790 36 1 5.2294 0.3598 -1.1519 37 1 5.6392 -0.0844 0.6392 38 1 8.0814 -0.1661 0.9167 39 1 9.3643 -2.0610 0.0132 40 1 8.2143 -3.8833 -1.1732 41 1 6.2010 -5.0286 -1.6577 42 1 4.6267 -4.3543 -1.1726 43 1 4.6795 -2.8265 -3.1250 44 1 6.2538 -3.5008 -3.6101 45 1 2.6877 -4.1203 -3.3743 46 1 2.7934 -5.8416 -3.8138 47 1 3.3583 -5.2944 -2.2168 48 1 5.5720 -4.4482 -5.6619 49 1 4.0485 -5.3626 -5.7661 50 1 4.0160 -3.6125 -5.4414 51 1 2.2491 -1.6316 1.1528 52 1 3.2468 -2.3962 4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331515737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:34 Heat of formation + Delta-G solvation = -6.951529 kcal Electronic energy + Delta-G solvation = -30962.087335 eV Core-core repulsion = 27154.309827 eV Total energy + Delta-G solvation = -3807.777507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.53104 -39.55625 -38.42524 -37.53590 -35.97735 -34.07482 -33.94900 -32.09353 -30.53354 -29.83119 -28.51985 -28.23707 -27.07840 -25.77959 -25.45250 -24.07987 -22.76618 -21.94901 -21.38791 -20.34890 -19.26625 -18.16354 -17.42930 -17.07297 -17.04334 -16.68508 -16.29949 -16.07692 -15.73797 -15.69066 -15.58853 -15.21318 -14.86677 -14.38950 -14.20646 -14.07549 -13.91978 -13.83805 -13.67029 -13.54615 -13.35322 -13.18403 -13.02272 -12.87708 -12.78521 -12.74044 -12.68236 -12.55013 -12.44208 -12.29224 -12.18890 -11.87587 -11.86076 -11.80840 -11.59151 -10.96405 -10.65116 -9.81887 -9.64557 -9.42736 -9.39025 -8.92298 -7.84882 -5.14613 0.14495 0.43203 1.41732 1.44254 1.52181 1.86847 2.20177 2.56700 2.77259 2.98400 3.44850 3.64545 3.85007 3.91807 3.97814 4.11820 4.13609 4.14909 4.21129 4.30037 4.33043 4.42558 4.46320 4.50801 4.54454 4.58101 4.60523 4.63997 4.66214 4.71751 4.72371 4.85573 4.88830 4.91079 4.96090 4.98169 4.99920 5.04971 5.07072 5.24382 5.25683 5.45455 5.47372 5.52808 5.54849 5.61025 5.74827 5.95202 6.03660 6.08214 6.32582 6.51065 7.33517 7.42059 8.24191 8.46874 9.36335 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004653 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.518208 B = 6016.084287 C = 7309.256012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.049 0.951 4 C 0.116 3.884 5 N -0.605 5.605 6 C 0.072 3.928 7 C 0.570 3.430 8 O -0.564 6.564 9 C -0.133 4.133 10 C -0.094 4.094 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.121 4.121 14 C -0.054 4.054 15 C -0.087 4.087 16 C 0.077 3.923 17 N -0.552 5.552 18 C 0.028 3.972 19 C 0.025 3.975 20 N -0.736 5.736 21 C -0.235 4.235 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.961 5.961 25 Si 0.964 3.036 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.267 1.267 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.091 0.909 45 H 0.012 0.988 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.022 0.978 51 H 0.381 0.619 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 1.626 -19.375 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.067 0.933 4 C -0.007 4.007 5 N -0.336 5.336 6 C -0.070 4.070 7 C 0.359 3.641 8 O -0.443 6.443 9 C -0.137 4.137 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.113 4.113 13 C -0.139 4.139 14 C -0.055 4.055 15 C -0.125 4.125 16 C -0.051 4.051 17 N -0.276 5.276 18 C -0.120 4.120 19 C -0.123 4.123 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.611 5.611 25 Si 0.793 3.207 26 H -0.219 1.219 27 H -0.226 1.226 28 H -0.191 1.191 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.110 0.890 45 H 0.031 0.969 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.040 0.960 51 H 0.217 0.783 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.991 0.872 -19.046 21.525 hybrid contribution -0.946 0.811 1.609 2.035 sum 9.045 1.683 -17.437 19.716 Atomic orbital electron populations 1.22244 0.97416 1.00476 1.01192 1.20961 0.93108 0.95515 0.86814 0.93299 1.21794 0.79390 1.01137 0.98410 1.47613 1.06870 1.21217 1.57914 1.22086 0.95908 0.90452 0.98562 1.18476 0.87923 0.81760 0.75902 1.90717 1.65066 1.38402 1.50070 1.19839 0.92472 0.97607 1.03739 1.21221 0.95745 0.97147 0.97152 1.21358 0.92729 1.00261 1.00469 1.21644 1.01553 0.92591 0.95478 1.21310 0.92430 1.00184 0.99947 1.19950 0.94560 0.93675 0.97334 1.20687 1.00959 0.96189 0.94621 1.21946 0.98837 0.91140 0.93219 1.62025 1.18422 1.42507 1.04618 1.22336 0.89099 1.00110 1.00451 1.22449 1.02870 1.00249 0.86739 1.42871 1.78047 1.11128 1.05871 1.19569 1.34735 0.93880 0.88568 0.91025 1.25497 1.03445 0.96662 1.01078 1.69947 1.52397 1.10193 1.28578 0.85282 0.76654 0.78212 0.80506 1.21931 1.22619 1.19133 0.94461 0.90134 0.94785 0.86596 0.92525 0.91221 0.89290 0.91077 0.87290 0.83549 0.82110 0.82756 0.89138 0.92066 0.96663 0.89042 0.96895 0.89830 0.92953 0.89967 0.90212 0.95952 0.78346 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 9.49 71.98 0.68 -4.84 16 2 C 0.15 5.87 3.20 44.99 0.14 6.02 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 4 C 0.12 3.96 5.13 86.38 0.44 4.40 16 5 N -0.60 -20.96 2.77 -850.20 -2.36 -23.32 16 6 C 0.07 1.82 10.20 127.77 1.30 3.12 16 7 C 0.57 23.66 5.02 86.78 0.44 24.10 16 8 O -0.56 -28.62 12.89 -3.88 -0.05 -28.67 16 9 C -0.13 -4.89 4.95 -20.09 -0.10 -4.99 16 10 C -0.09 -3.21 7.61 22.53 0.17 -3.04 16 11 C -0.13 -3.41 10.03 22.23 0.22 -3.19 16 12 C -0.09 -2.06 10.04 22.33 0.22 -1.84 16 13 C -0.12 -2.89 9.66 22.23 0.21 -2.68 16 14 C -0.05 -1.67 5.17 -19.61 -0.10 -1.77 16 15 C -0.09 -2.63 4.75 29.85 0.14 -2.49 16 16 C 0.08 1.96 4.90 86.30 0.42 2.38 16 17 N -0.55 -13.40 5.02 -948.84 -4.76 -18.16 16 18 C 0.03 0.76 9.32 127.69 1.19 1.95 16 19 C 0.02 0.44 9.57 127.69 1.22 1.66 16 20 N -0.74 -39.38 4.52 -322.93 -1.46 -40.84 16 21 C -0.24 -13.60 9.93 84.04 0.83 -12.77 16 22 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.96 -63.26 13.06 21.65 0.28 -62.98 16 25 Si 0.96 48.24 29.55 68.60 2.03 50.27 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 28 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.12 2.84 8.07 -2.39 -0.02 2.82 16 33 H 0.06 2.21 7.35 -2.39 -0.02 2.19 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.89 8.03 -2.39 -0.02 1.87 16 36 H 0.07 1.88 4.57 -2.38 -0.01 1.87 16 37 H 0.11 4.13 7.40 -2.91 -0.02 4.10 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.15 2.69 8.04 -2.91 -0.02 2.67 16 41 H 0.09 2.42 8.02 -2.39 -0.02 2.40 16 42 H 0.06 2.36 4.51 -2.39 -0.01 2.35 16 43 H 0.02 0.44 7.48 -2.39 -0.02 0.42 16 44 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 1.86 8.12 -2.38 -0.02 1.84 16 47 H 0.05 1.67 6.47 -2.39 -0.02 1.66 16 48 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 50 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.38 22.96 5.27 -92.71 -0.49 22.47 16 52 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -79.61 410.43 2.00 -77.61 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: 0.40 Total: 44.08 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 7.92 Total: 2.01 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -8.30 Total: -145.30 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -79.61 2.00 -77.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331515737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.656 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds