Wall clock time and date at job start Tue Mar 31 2020 18:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47306 * 2 1 4 4 C 1.46899 * 110.99768 * 201.47841 * 3 2 1 5 5 C 1.46897 * 110.99937 * 77.52562 * 3 2 1 6 6 H 1.08990 * 109.47526 * 49.02073 * 5 3 2 7 7 C 1.50700 * 109.46708 * 169.02354 * 5 3 2 8 8 O 1.21276 * 120.00719 * 28.59276 * 7 5 3 9 9 N 1.34784 * 119.99655 * 208.59110 * 7 5 3 10 10 C 1.46497 * 119.99994 * 359.97438 * 9 7 5 11 11 C 1.46504 * 119.99596 * 180.02562 * 9 7 5 12 12 C 1.53002 * 109.47216 * 89.99836 * 11 9 7 13 13 H 1.09005 * 109.46997 * 65.00179 * 12 11 9 14 14 C 1.52999 * 109.47056 * 184.99554 * 12 11 9 15 15 N 1.46499 * 109.47002 * 304.99894 * 12 11 9 16 16 C 1.36935 * 119.99617 * 155.00127 * 15 12 11 17 17 H 1.08000 * 120.00388 * 359.97438 * 16 15 12 18 18 C 1.38814 * 119.99953 * 179.97438 * 16 15 12 19 19 N 1.31619 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47315 * 120.00361 * 20 18 16 23 23 H 1.48508 * 109.47389 * 240.00139 * 20 18 16 24 24 C 1.50703 * 109.46963 * 289.01828 * 5 3 2 25 25 C 1.38237 * 120.00139 * 311.44543 * 24 5 3 26 26 C 1.38234 * 120.00019 * 179.78866 * 25 24 5 27 27 C 1.38238 * 119.99781 * 0.43832 * 26 25 24 28 28 C 1.38229 * 119.99849 * 359.81171 * 27 26 25 29 29 C 1.38232 * 120.00626 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46711 * 290.38661 * 1 2 3 31 31 H 1.08998 * 109.46795 * 50.38330 * 1 2 3 32 32 H 1.08992 * 109.47013 * 170.38683 * 1 2 3 33 33 H 1.08996 * 109.47244 * 239.99428 * 2 1 3 34 34 H 1.09001 * 109.46958 * 119.99652 * 2 1 3 35 35 H 1.09000 * 109.47061 * 294.35130 * 4 3 2 36 36 H 1.09001 * 109.47491 * 54.34872 * 4 3 2 37 37 H 1.09006 * 109.47148 * 174.35462 * 4 3 2 38 38 H 1.08997 * 109.47375 * 269.99851 * 10 9 7 39 39 H 1.08998 * 109.46826 * 30.00367 * 10 9 7 40 40 H 1.09005 * 109.46797 * 150.00001 * 10 9 7 41 41 H 1.08999 * 109.47289 * 329.99636 * 11 9 7 42 42 H 1.09003 * 109.46584 * 209.99938 * 11 9 7 43 43 H 1.09004 * 109.47111 * 180.02562 * 14 12 11 44 44 H 1.09007 * 109.46868 * 300.00031 * 14 12 11 45 45 H 1.09001 * 109.47006 * 60.00042 * 14 12 11 46 46 H 0.96992 * 120.00265 * 334.99424 * 15 12 11 47 47 H 0.96997 * 119.99960 * 180.02562 * 19 18 16 48 48 H 1.08006 * 119.99778 * 359.97438 * 25 24 5 49 49 H 1.07999 * 120.00320 * 180.26792 * 26 25 24 50 50 H 1.08000 * 119.99922 * 179.83326 * 27 26 25 51 51 H 1.08010 * 119.99815 * 179.97438 * 28 27 26 52 52 H 1.07995 * 120.00484 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.3984 1.4558 -0.5022 5 6 1.9160 1.9800 1.3390 6 1 2.3455 1.2990 2.0736 7 6 2.6654 3.2871 1.3672 8 8 2.7808 3.9421 0.3531 9 7 3.2075 3.7284 2.5197 10 6 3.0677 2.9376 3.7449 11 6 3.9356 4.9994 2.5472 12 6 2.9638 6.1371 2.8669 13 1 2.5719 6.0074 3.8757 14 6 3.6978 7.4762 2.7733 15 7 1.8573 6.1184 1.9069 16 6 0.6456 6.6571 2.2484 17 1 0.5054 7.0953 3.2255 18 6 -0.4027 6.6399 1.3386 19 7 -0.2321 6.1054 0.1480 20 14 -2.0559 7.3740 1.8046 21 1 -1.9888 7.9058 3.1895 22 1 -2.3905 8.4756 0.8665 23 1 -3.1032 6.3238 1.7284 24 6 0.4660 2.2251 1.6688 25 6 -0.3524 2.8627 0.7551 26 6 -1.6834 3.0836 1.0558 27 6 -2.1938 2.6751 2.2738 28 6 -1.3742 2.0422 3.1894 29 6 -0.0442 1.8173 2.8870 30 1 -0.3633 0.3580 0.9633 31 1 -0.3633 0.6553 -0.7916 32 1 -0.3633 -1.0132 -0.1716 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0640 0.9390 0.1893 36 1 3.4531 0.9815 -1.4820 37 1 3.7013 2.4996 -0.5863 38 1 2.1604 3.2374 4.2693 39 1 3.0070 1.8797 3.4895 40 1 3.9317 3.1073 4.3874 41 1 4.3947 5.1762 1.5745 42 1 4.7106 4.9576 3.3126 43 1 3.0056 8.2867 3.0015 44 1 4.5211 7.4900 3.4876 45 1 4.0898 7.6059 1.7645 46 1 1.9831 5.7246 1.0295 47 1 -0.9645 6.0937 -0.4879 48 1 0.0475 3.1855 -0.1948 49 1 -2.3239 3.5779 0.3403 50 1 -3.2331 2.8501 2.5099 51 1 -1.7729 1.7234 4.1413 52 1 0.5960 1.3224 3.6022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331617481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:25 Heat of formation + Delta-G solvation = 36.792072 kcal Electronic energy + Delta-G solvation = -32330.888373 eV Core-core repulsion = 28525.007731 eV Total energy + Delta-G solvation = -3805.880642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32331 -38.38414 -36.90775 -35.59177 -34.32891 -31.98824 -31.33300 -30.68697 -30.17672 -28.55086 -27.25253 -26.80405 -25.29561 -24.00272 -23.40013 -22.15003 -21.39154 -20.94100 -19.71627 -18.51843 -17.23414 -16.64363 -16.56914 -15.93130 -15.25365 -14.85084 -14.76641 -14.52981 -14.19850 -14.05907 -13.76177 -13.57226 -13.11734 -12.99501 -12.88844 -12.75981 -12.50773 -12.35871 -12.13835 -12.07911 -11.93718 -11.85709 -11.67040 -11.38208 -11.36322 -11.12148 -11.04858 -10.75140 -10.68595 -10.56071 -10.40448 -10.32816 -10.24928 -9.90086 -9.44323 -9.13969 -8.71981 -8.16926 -8.10771 -7.98163 -7.88908 -6.66906 -5.48869 -2.76995 1.92659 2.17173 3.25223 3.40505 3.51834 3.58286 3.58901 4.13211 4.52200 4.75842 4.92010 5.03212 5.16928 5.24398 5.35033 5.39520 5.48742 5.54208 5.58899 5.59355 5.66622 5.70543 5.72625 5.76076 5.80934 5.89362 5.96084 5.99401 6.08244 6.14779 6.14842 6.21451 6.32309 6.34840 6.36443 6.46468 6.55822 6.59954 6.74872 6.75709 6.88340 7.02875 7.03832 7.09115 7.22331 7.25858 7.34954 7.42613 7.71806 7.88971 7.92507 8.65583 8.85857 9.80198 10.41736 10.82046 11.70038 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.007058 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.866812 B = 3966.139633 C = 5521.523921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.057 3.943 3 N -0.514 5.514 4 C 0.010 3.990 5 C 0.117 3.883 6 H 0.057 0.943 7 C 0.532 3.468 8 O -0.496 6.496 9 N -0.606 5.606 10 C 0.080 3.920 11 C 0.111 3.889 12 C 0.155 3.845 13 H 0.040 0.960 14 C -0.163 4.163 15 N -0.717 5.717 16 C -0.236 4.236 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.906 5.906 20 Si 0.885 3.115 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.292 1.292 24 C -0.074 4.074 25 C -0.021 4.021 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.135 4.135 29 C -0.120 4.120 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.013 0.987 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.399 0.601 47 H 0.248 0.752 48 H 0.134 0.866 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.111 0.889 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -13.883 5.167 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.071 4.071 3 N -0.239 5.239 4 C -0.138 4.138 5 C 0.006 3.994 6 H 0.075 0.925 7 C 0.319 3.681 8 O -0.369 6.369 9 N -0.341 5.341 10 C -0.064 4.064 11 C -0.012 4.012 12 C 0.043 3.957 13 H 0.058 0.942 14 C -0.224 4.224 15 N -0.363 5.363 16 C -0.368 4.368 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.554 5.554 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.219 1.219 24 C -0.075 4.075 25 C -0.040 4.040 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.153 4.153 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.238 0.762 47 H 0.058 0.942 48 H 0.152 0.848 49 H 0.130 0.870 50 H 0.127 0.873 51 H 0.129 0.871 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.500 -13.210 4.330 14.950 hybrid contribution -0.589 0.106 0.868 1.054 sum 4.911 -13.104 5.197 14.928 Atomic orbital electron populations 1.22095 0.94640 1.00759 1.03902 1.22102 0.96817 0.88066 1.00089 1.61740 1.22303 1.17736 1.22091 1.22729 0.87424 1.04711 0.98887 1.20525 0.94078 0.94187 0.90627 0.92546 1.19892 0.78283 0.86727 0.83222 1.90648 1.56859 1.56602 1.32806 1.47561 1.55669 1.22098 1.08727 1.21805 1.02080 0.95114 0.87391 1.21847 0.93865 0.83316 1.02173 1.20606 0.89220 0.91284 0.94560 0.94163 1.22421 0.99193 1.00724 1.00055 1.42650 1.07238 1.70847 1.15526 1.19116 0.88723 1.30728 0.98218 0.92301 1.24542 0.97035 1.01683 0.96367 1.69741 1.30635 1.49483 1.05523 0.86456 0.86146 0.78539 0.77160 1.21156 1.22393 1.21930 1.19050 0.92616 1.00959 0.94889 1.20911 0.92079 0.91479 0.99484 1.21031 0.96172 0.98477 0.96724 1.21031 0.99242 0.98855 0.94519 1.20768 0.93890 1.01656 0.98997 1.20730 0.95496 1.01716 0.95924 0.91290 0.91518 0.93376 0.91162 0.95229 0.96838 0.91558 0.88445 0.92360 0.91930 0.91601 0.90394 0.91350 0.92742 0.94842 0.93452 0.76221 0.94197 0.84793 0.86968 0.87339 0.87132 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.58 37.16 0.32 -1.77 16 2 C 0.06 0.74 5.72 -3.82 -0.02 0.72 16 3 N -0.51 -8.10 4.06 -237.69 -0.96 -9.07 16 4 C 0.01 0.15 8.88 60.06 0.53 0.68 16 5 C 0.12 1.93 1.52 -70.02 -0.11 1.82 16 6 H 0.06 0.81 5.36 -51.93 -0.28 0.53 16 7 C 0.53 10.11 5.01 -10.98 -0.06 10.06 16 8 O -0.50 -11.32 11.74 5.56 0.07 -11.26 16 9 N -0.61 -10.23 2.77 -181.57 -0.50 -10.74 16 10 C 0.08 1.03 10.31 59.85 0.62 1.64 16 11 C 0.11 1.90 5.19 -4.04 -0.02 1.88 16 12 C 0.16 3.17 3.20 -67.93 -0.22 2.95 16 13 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 14 C -0.16 -3.04 9.49 37.16 0.35 -2.69 16 15 N -0.72 -18.35 4.52 -53.42 -0.24 -18.59 16 16 C -0.24 -6.66 9.93 -15.06 -0.15 -6.80 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 19 N -0.91 -26.64 13.06 55.49 0.72 -25.92 16 20 Si 0.88 22.81 29.55 -169.99 -5.02 17.78 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 C -0.07 -1.32 2.56 -104.62 -0.27 -1.58 16 25 C -0.02 -0.43 7.48 -39.58 -0.30 -0.73 16 26 C -0.11 -2.11 10.05 -39.58 -0.40 -2.51 16 27 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 28 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 29 C -0.12 -1.91 8.83 -39.58 -0.35 -2.26 16 30 H 0.07 1.00 4.84 -51.93 -0.25 0.75 16 31 H 0.07 1.00 7.72 -51.93 -0.40 0.59 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.81 7.77 -51.93 -0.40 0.40 16 34 H 0.03 0.35 7.76 -51.93 -0.40 -0.05 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 37 H 0.10 1.70 5.37 -51.93 -0.28 1.42 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.69 5.80 -51.93 -0.30 0.39 16 40 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 41 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 42 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.40 11.07 5.02 -40.82 -0.20 10.87 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.13 3.17 7.98 -52.48 -0.42 2.75 16 49 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 50 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 51 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 52 H 0.11 1.40 7.98 -52.49 -0.42 0.98 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -32.11 403.33 -9.56 -41.67 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -8.75 Total: 13.76 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.95 Total: -3.72 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.99 Total: -64.32 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.11 -9.56 -41.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331617481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.466 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds