Wall clock time and date at job start Tue Mar 31 2020 18:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47306 * 2 1 4 4 C 1.46899 * 110.99768 * 201.47841 * 3 2 1 5 5 C 1.46897 * 110.99937 * 77.52562 * 3 2 1 6 6 H 1.08990 * 109.47526 * 49.02073 * 5 3 2 7 7 C 1.50700 * 109.46708 * 169.02354 * 5 3 2 8 8 O 1.21276 * 120.00719 * 28.59276 * 7 5 3 9 9 N 1.34784 * 119.99655 * 208.59110 * 7 5 3 10 10 C 1.46497 * 119.99994 * 359.97438 * 9 7 5 11 11 C 1.46504 * 119.99596 * 180.02562 * 9 7 5 12 12 C 1.53002 * 109.47216 * 89.99836 * 11 9 7 13 13 H 1.09005 * 109.46997 * 65.00179 * 12 11 9 14 14 C 1.52999 * 109.47056 * 184.99554 * 12 11 9 15 15 N 1.46499 * 109.47002 * 304.99894 * 12 11 9 16 16 C 1.36935 * 119.99617 * 155.00127 * 15 12 11 17 17 H 1.08000 * 120.00388 * 359.97438 * 16 15 12 18 18 C 1.38814 * 119.99953 * 179.97438 * 16 15 12 19 19 N 1.31619 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47315 * 120.00361 * 20 18 16 23 23 H 1.48508 * 109.47389 * 240.00139 * 20 18 16 24 24 C 1.50703 * 109.46963 * 289.01828 * 5 3 2 25 25 C 1.38237 * 120.00139 * 311.44543 * 24 5 3 26 26 C 1.38234 * 120.00019 * 179.78866 * 25 24 5 27 27 C 1.38238 * 119.99781 * 0.43832 * 26 25 24 28 28 C 1.38229 * 119.99849 * 359.81171 * 27 26 25 29 29 C 1.38232 * 120.00626 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46711 * 290.38661 * 1 2 3 31 31 H 1.08998 * 109.46795 * 50.38330 * 1 2 3 32 32 H 1.08992 * 109.47013 * 170.38683 * 1 2 3 33 33 H 1.08996 * 109.47244 * 239.99428 * 2 1 3 34 34 H 1.09001 * 109.46958 * 119.99652 * 2 1 3 35 35 H 1.09000 * 109.47061 * 294.35130 * 4 3 2 36 36 H 1.09001 * 109.47491 * 54.34872 * 4 3 2 37 37 H 1.09006 * 109.47148 * 174.35462 * 4 3 2 38 38 H 1.08997 * 109.47375 * 269.99851 * 10 9 7 39 39 H 1.08998 * 109.46826 * 30.00367 * 10 9 7 40 40 H 1.09005 * 109.46797 * 150.00001 * 10 9 7 41 41 H 1.08999 * 109.47289 * 329.99636 * 11 9 7 42 42 H 1.09003 * 109.46584 * 209.99938 * 11 9 7 43 43 H 1.09004 * 109.47111 * 180.02562 * 14 12 11 44 44 H 1.09007 * 109.46868 * 300.00031 * 14 12 11 45 45 H 1.09001 * 109.47006 * 60.00042 * 14 12 11 46 46 H 0.96992 * 120.00265 * 334.99424 * 15 12 11 47 47 H 0.96997 * 119.99960 * 180.02562 * 19 18 16 48 48 H 1.08006 * 119.99778 * 359.97438 * 25 24 5 49 49 H 1.07999 * 120.00320 * 180.26792 * 26 25 24 50 50 H 1.08000 * 119.99922 * 179.83326 * 27 26 25 51 51 H 1.08010 * 119.99815 * 179.97438 * 28 27 26 52 52 H 1.07995 * 120.00484 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.3984 1.4558 -0.5022 5 6 1.9160 1.9800 1.3390 6 1 2.3455 1.2990 2.0736 7 6 2.6654 3.2871 1.3672 8 8 2.7808 3.9421 0.3531 9 7 3.2075 3.7284 2.5197 10 6 3.0677 2.9376 3.7449 11 6 3.9356 4.9994 2.5472 12 6 2.9638 6.1371 2.8669 13 1 2.5719 6.0074 3.8757 14 6 3.6978 7.4762 2.7733 15 7 1.8573 6.1184 1.9069 16 6 0.6456 6.6571 2.2484 17 1 0.5054 7.0953 3.2255 18 6 -0.4027 6.6399 1.3386 19 7 -0.2321 6.1054 0.1480 20 14 -2.0559 7.3740 1.8046 21 1 -1.9888 7.9058 3.1895 22 1 -2.3905 8.4756 0.8665 23 1 -3.1032 6.3238 1.7284 24 6 0.4660 2.2251 1.6688 25 6 -0.3524 2.8627 0.7551 26 6 -1.6834 3.0836 1.0558 27 6 -2.1938 2.6751 2.2738 28 6 -1.3742 2.0422 3.1894 29 6 -0.0442 1.8173 2.8870 30 1 -0.3633 0.3580 0.9633 31 1 -0.3633 0.6553 -0.7916 32 1 -0.3633 -1.0132 -0.1716 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0640 0.9390 0.1893 36 1 3.4531 0.9815 -1.4820 37 1 3.7013 2.4996 -0.5863 38 1 2.1604 3.2374 4.2693 39 1 3.0070 1.8797 3.4895 40 1 3.9317 3.1073 4.3874 41 1 4.3947 5.1762 1.5745 42 1 4.7106 4.9576 3.3126 43 1 3.0056 8.2867 3.0015 44 1 4.5211 7.4900 3.4876 45 1 4.0898 7.6059 1.7645 46 1 1.9831 5.7246 1.0295 47 1 -0.9645 6.0937 -0.4879 48 1 0.0475 3.1855 -0.1948 49 1 -2.3239 3.5779 0.3403 50 1 -3.2331 2.8501 2.5099 51 1 -1.7729 1.7234 4.1413 52 1 0.5960 1.3224 3.6022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331617481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:24 Heat of formation + Delta-G solvation = 16.832902 kcal Electronic energy + Delta-G solvation = -32331.753868 eV Core-core repulsion = 28525.007731 eV Total energy + Delta-G solvation = -3806.746137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64925 -39.76613 -38.20296 -37.10744 -35.91155 -33.84831 -32.73290 -31.81311 -31.54618 -30.44721 -28.59552 -27.97564 -26.56587 -25.59058 -25.07719 -23.47721 -22.68960 -22.25983 -21.25725 -19.87895 -19.10168 -18.08969 -17.89264 -17.26955 -16.65878 -16.53890 -16.04519 -15.97607 -15.68262 -15.41379 -15.30011 -14.99449 -14.66533 -14.26569 -14.19313 -14.12292 -13.92906 -13.64145 -13.54103 -13.40940 -13.35978 -13.17638 -12.95186 -12.89076 -12.81881 -12.65700 -12.48178 -12.35450 -12.24281 -12.07018 -11.88682 -11.77608 -11.70458 -11.61720 -11.47926 -10.83799 -10.57141 -9.55640 -9.35848 -9.30970 -9.15188 -8.73111 -7.68516 -4.95408 0.55111 0.78978 1.42631 1.44014 1.50807 1.86687 2.17649 2.63936 2.92557 3.20764 3.60125 3.70004 3.81675 3.98038 4.09836 4.14253 4.25293 4.27911 4.30110 4.35953 4.40766 4.45412 4.52790 4.58373 4.65050 4.67606 4.71624 4.74639 4.77217 4.78523 4.93317 4.95646 4.96843 4.99908 5.12224 5.14084 5.17105 5.23679 5.31702 5.36940 5.48581 5.53402 5.63789 5.68310 5.80459 5.83298 5.89537 6.10068 6.23805 6.31390 6.45893 6.63636 7.47673 7.59121 8.40201 8.66933 9.49448 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.007058 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.866812 B = 3966.139633 C = 5521.523921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 N -0.541 5.541 4 C 0.017 3.983 5 C 0.124 3.876 6 H 0.089 0.911 7 C 0.523 3.477 8 O -0.546 6.546 9 N -0.608 5.608 10 C 0.072 3.928 11 C 0.117 3.883 12 C 0.146 3.854 13 H 0.040 0.960 14 C -0.153 4.153 15 N -0.729 5.729 16 C -0.236 4.236 17 H 0.056 0.944 18 C -0.045 4.045 19 N -0.927 5.927 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.305 1.305 23 H -0.292 1.292 24 C -0.074 4.074 25 C -0.034 4.034 26 C -0.133 4.133 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.114 4.114 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.031 0.969 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.387 0.613 47 H 0.238 0.762 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.123 0.877 51 H 0.149 0.851 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 -16.217 8.775 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 N -0.267 5.267 4 C -0.130 4.130 5 C 0.013 3.987 6 H 0.106 0.894 7 C 0.311 3.689 8 O -0.422 6.422 9 N -0.341 5.341 10 C -0.070 4.070 11 C -0.006 4.006 12 C 0.036 3.964 13 H 0.058 0.942 14 C -0.213 4.213 15 N -0.374 5.374 16 C -0.368 4.368 17 H 0.074 0.926 18 C -0.240 4.240 19 N -0.576 5.576 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.233 1.233 23 H -0.220 1.220 24 C -0.075 4.075 25 C -0.052 4.052 26 C -0.151 4.151 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.133 4.133 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.135 0.865 43 H 0.050 0.950 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.224 0.776 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.141 0.859 51 H 0.166 0.834 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.955 -15.551 8.007 18.824 hybrid contribution -0.982 0.846 -0.225 1.316 sum 5.973 -14.705 7.782 17.677 Atomic orbital electron populations 1.22020 0.95348 1.01324 1.02132 1.22160 0.96088 0.86731 1.01836 1.61650 1.23126 1.19647 1.22232 1.22586 0.87342 1.02924 1.00157 1.20495 0.92856 0.93508 0.91858 0.89426 1.20435 0.77954 0.87339 0.83158 1.90632 1.58621 1.58134 1.34840 1.47723 1.54746 1.22074 1.09548 1.22095 1.03228 0.95718 0.85963 1.21788 0.93819 0.82403 1.02631 1.20909 0.88739 0.93542 0.93191 0.94164 1.22258 0.99819 0.98702 1.00567 1.42823 1.07909 1.70632 1.16062 1.19310 0.89900 1.29878 0.97739 0.92635 1.25067 0.99545 1.02810 0.96571 1.69901 1.30687 1.50792 1.06211 0.85658 0.83314 0.77488 0.76920 1.20213 1.23303 1.21959 1.19200 0.93023 1.00271 0.95029 1.20484 0.92667 0.93533 0.98551 1.20980 0.96138 1.00112 0.97865 1.21252 1.00458 0.99087 0.93875 1.21210 0.93741 0.99948 0.99730 1.21160 0.96034 1.00632 0.95437 0.92433 0.94440 0.91007 0.89702 0.92975 0.94653 0.90360 0.91827 0.93403 0.89691 0.88111 0.92466 0.86475 0.94968 0.90404 0.94730 0.77633 0.95223 0.89606 0.89314 0.85861 0.83362 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 8.58 71.98 0.62 -3.30 16 2 C 0.06 1.40 5.72 86.30 0.49 1.90 16 3 N -0.54 -16.86 4.06 -905.93 -3.68 -20.54 16 4 C 0.02 0.50 8.88 127.69 1.13 1.63 16 5 C 0.12 3.91 1.52 43.42 0.07 3.98 16 6 H 0.09 2.15 5.36 -2.39 -0.01 2.13 16 7 C 0.52 19.74 5.01 87.66 0.44 20.18 16 8 O -0.55 -26.06 11.74 -3.02 -0.04 -26.10 16 9 N -0.61 -19.22 2.77 -846.74 -2.35 -21.56 16 10 C 0.07 1.53 10.31 127.77 1.32 2.85 16 11 C 0.12 3.76 5.19 86.38 0.45 4.21 16 12 C 0.15 5.82 3.20 44.99 0.14 5.96 16 13 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 14 C -0.15 -5.52 9.49 71.98 0.68 -4.84 16 15 N -0.73 -38.04 4.52 -322.93 -1.46 -39.51 16 16 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 17 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 18 C -0.05 -2.66 5.50 84.86 0.47 -2.19 16 19 N -0.93 -57.45 13.06 21.65 0.28 -57.17 16 20 Si 0.93 48.21 29.55 68.60 2.03 50.23 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 23 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 24 C -0.07 -2.58 2.56 -19.86 -0.05 -2.64 16 25 C -0.03 -1.45 7.48 22.27 0.17 -1.28 16 26 C -0.13 -5.59 10.05 22.27 0.22 -5.37 16 27 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 28 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 29 C -0.11 -3.28 8.83 22.27 0.20 -3.08 16 30 H 0.06 1.61 4.84 -2.39 -0.01 1.60 16 31 H 0.04 1.17 7.72 -2.39 -0.02 1.15 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.76 7.77 -2.39 -0.02 1.74 16 34 H 0.05 1.03 7.76 -2.39 -0.02 1.01 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.98 7.93 -2.39 -0.02 1.96 16 37 H 0.06 2.30 5.37 -2.38 -0.01 2.29 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.41 5.80 -2.39 -0.01 1.40 16 40 H 0.10 1.46 7.89 -2.38 -0.02 1.44 16 41 H 0.06 2.10 7.42 -2.39 -0.02 2.08 16 42 H 0.12 2.61 7.89 -2.39 -0.02 2.59 16 43 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.39 22.33 5.02 -92.71 -0.47 21.86 16 47 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.09 4.49 7.98 -2.91 -0.02 4.46 16 49 H 0.09 3.98 8.06 -2.91 -0.02 3.95 16 50 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 51 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 52 H 0.15 3.02 7.98 -2.91 -0.02 2.99 16 Total: -1.00 -76.19 403.33 2.84 -73.34 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: 0.43 Total: 43.78 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 7.63 Total: -2.48 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -7.20 Total: -138.78 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.04 Total: -26.10 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.23 kcal Total: -76.19 2.84 -73.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331617481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.176 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds